MICA: Delivering gene silencing therapy to the epidermis and ocular surface

Lead Research Organisation: University of Dundee
Department Name: School of Life Sciences

Abstract

This research programme is aimed at developing treatments for inherited skin and eye disorders that are currently untreatable and incurable at the present time. These disorders are collectively rare but when grouped together, affect about 1 in 5000 people or about 12,000 individuals in the UK alone. These conditions are characterised by fragility of cells within the epidermis, the outermost part of the skin, and result in lifelong, very painful, skin blistering and thickening. In one disease, the outermost layers of cells covering of eye (part of the cornea) are affected instead, leading to visual impairment and eye pain. These diseases have an onset at birth or early infancy and are a lifelong burden to the patients, their families and carers. The cost of lifelong symptomatic treatment of these patients represents a significant financial burden on the NHS, although there is no truly effective treatment, only dressings and pain management.

The underlying problem in this group of conditions is a particular type of mutation or genetic "spelling mistake" in genes whose main function is to give cells mechanical strength. Everyone has two copies of most genes. In these particular genetic skin and eye disorders, one of these copies is normal but the other one is defective. Unfortunately, the defective gene is able to overcome the normal gene and prevent the normal one from doing its job properly. This mechanism, called dominant-negative interference, underlies very many of these important skin and eye disorders.

Here, we will develop a highly specialised type of therapy molecule (called an antisense oligonucleotide or ASO) that can enter the affected cells of the skin or eye and "switch off" the mutant gene, without altering the normal gene. This will allow the normal gene to function correctly and greatly alleviate the symptoms of the disease or cure it completely. A major hurdle to applying this technology clinically is that ASOs are difficult to get into the cells of the skin and the eye. A US-based company, Wave Life Sciences, has recently developed a new form of ASO which we have reason to believe will be easier to deliver to the epidermis and the cornea than previous versions. In Dundee, we have developed a number of highly sophisticated technology platforms for studying and refining the delivery of ASO into the skin and cornea. This programme represents a close collaboration with Wave Life Sciences to bring together their expertise with the Dundee group's experience in dermatology and ophthalmology to move this exciting, potentially curative therapy technology, into clinical application. This will be of direct benefit to patients with rare diseases but if successful, this technology could be used to treat common skin conditions such as eczema, psoriasis and acne, as well as common and life-threatening skin cancers. The technology could also be readily adapted to treat other genetic conditions affecting organs other than the skin or eye.

Technical Summary

This programme is aimed at developing therapy for dominantly inherited keratinizing disorders. This group of hereditary disorders mainly causes cell fragility in specific differentiated cell compartments of the epidermis but some also affect some epithelial barrier tissues, such as the anterior corneal epithelium. Keratinizing disorders are collectively rare but when grouped together, affect about 1 in 5000 people or about 12,000 individuals in the UK alone. These conditions result in lifelong, very painful, skin blistering and thickening. The prototypic disease is epidermolysis bullosa simplex (EBS), an autosomal dominant skin blistering disorder, with 5000 cases in the UK. In Meesmann epithelial corneal dystrophy, the corneal epithelium is affected instead, leading to visual impairment and eye pain.

The underlying problem in this group of conditions is dominant-negative interference resulting from missense or small in-frame insertion/deletion mutations in keratin intermediate filament proteins or related proteins.

Here, we will develop a highly specialised type antisense oligonucleotide (or ASO) that can inhibit the mutant allele, without altering the normal allele. A major hurdle to applying this technology clinically is that ASOs are difficult to deliver in vivo. A US-based company, Wave Life Sciences, has recently developed a new form of ASO chemistry which is more potent, has single-nucleotide specificity and shows enhanced bioavailability The Dundee group has developed a a whole range of bioluminescent animal models expressing luciferase in specific epithelial and epidermal compartments to test ASO delivery. We have also recently developed a proprietary system for longer term and much more functional organ culture of mammalian skin. In addition to developing ASO delivery, we will build case collections of well genotyped and phenotyped patients in readiness for future clinical trials of our ASO technology or other therapeutic approaches.

Planned Impact

This research programme is aimed to benefit an important area of unmet medical need, namely, a large group incurable and currently untreatable inherited disorders affecting the epidermis and outmost protective layers of the eye. In a broader sense, scientific and technical hurdles overcome in the course of this project might later be of benefit outside of dermatology and ophthalmology, by being applied to hundreds of genetic disorders of other organ systems where the underlying mechanism is similar.

The main focus of the programme is development of treatment for three prototypic genetic diseases each of which has some advantage in terms of tractability. There are - the hereditary skin blistering disease epidermolysis bullosa simplex (EBS), that affects about 5000 people in the UK; the very painful debilitating skin disorder pachyonychia congentia (PC), affecting about 500 people in the UK; and Meesmann epithelial corneal dystrophy, an inherited defect of the cornea, which affects some hundreds of British patients.

In each of these conditions (and hundreds of other inherited diseases), the underlying disease mechanism is dominant-negative interference, whereby a single copy of a mutated gene is able to overcome the normal copy of the gene present, resulting in the disease pathology. Here, we aim to develop a means of silencing only the defective copy of the disease-causing gene without affecting the normal copy. There is a substantial body of evidence that this will be an effective treatment. The system we will employ, in partnership with our industrial collaborator Wave Life Sciences, is an advanced form of antisense technology - a system capable of discriminating very minor differences between copies of genes and specifically silencing the desired copy.

A major hurdle in applying this technology to dermatology and ophthalmology diseases is lack of an effective non-invasive method to get antisense molecules into the epidermis or cornea of the eye. A significant proportion of this programme is aimed at developing and optimising delivery into these tissues.

If successful, this system could be extended to other skin and eye disorders, as well as hundreds of other genetic conditions. The system could also be readily adapted to treat common conditions of the skin such as eczema, psoriasis and importantly, skin cancers, by silencing genes that are critically important drivers of those diseases.

Thus, this programme has great potential benefit very large numbers of individuals by bringing about treatments for distressing and debilitating conditions that cannot currently be treated.

Publications

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Wong XFCC (2018) Array-based sequencing of filaggrin gene for comprehensive detection of disease-associated variants. in The Journal of allergy and clinical immunology

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Hickerson RP (2021) Minimal, superficial DNA damage in human skin from filtered far-ultraviolet C. in The British journal of dermatology

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Vermeer FC (2021) Therapeutic Prospects of Exon Skipping for Epidermolysis Bullosa. in International journal of molecular sciences

 
Title TenSkin™ - tension-based ex vivo human skin model 
Description TenSkin™. Ten Bio will provide a ready-to-use product which is comprised of full-thickness human abdominal skin held at optimal tension by a disposable plastic culture frame provided in a format compatible with standard tissue culture techniques and tools. TenSkin™ presents new ways for customers to perform certain tests previously performed in animals thus offering both cost and time savings. It is well documented that nearly 90% of clinical trials fail due to lack of safety and/or efficacy. In these cases, the ex vivo and in vivo studies conducted to determine whether a new drug was safe and effective were not able to provide the predictive results that could be successfully translated into human subjects. Having accurate predictive data in a human-based model would save companies millions of dollars and years of development in helping to triage compounds before entering clinical trials. Considering recent restrictions on the use of animals (i.e., 7th amendment (EU Directive 76/768/EEC2), March 2009/2013), this model provides an ethically enhanced route to market. The company will offer TenSkin™ in a variety of different industry standard sizes to suit multiple uses, including a product large enough for use with industry standard Franz cell equipment for penetration studies. As customer demand requires the freshest product possible, TenSkin™ can be shipped overnight in Ten Bio's standard rich culture medium or in specific medium requested by the customer. Due to the flexibility of the design, the company also has the ability to respond to custom size requirements to allow adaptation to Franz cell or trans-epidermal water loss studies. However, the company has prioritised the commercialisation of the TenSkin™ model with an available skin surface area of 2.5 cm2 which will be suitable for most applications including wound healing, dermal toxicology, lead candidate verification and cosmetics efficacy verification. 
Type Of Material Model of mechanisms or symptoms - human 
Year Produced 2020 
Provided To Others? Yes  
Impact The most notable impact has been the formation of Ten Bio Ltd, a spinout from the University of Dundee. As we begin trading in the next few months, we predict tremendous impact in the field as this new model is superior to anything on the market and to "home-made" or "in-house" models. 
URL http://ten-bio.com
 
Description Delivery of neutrally-charged oligos to skin 
Organisation Feldan
Country Canada 
Sector Private 
PI Contribution My team has developed a state-of-the-art ex vivo skin testing platform to evaluate delivery and efficacy of nucleic acid-based therapeutics. We will use this platform to evaluate delivery of our antisense oligos using Feldan's proprietary delivery technology
Collaborator Contribution Feldan Therapeutics has developed technology to topically deliver nucleic acids to skin. We will evaluate this delivery technology in our proprietary ex vivo skin model
Impact No outcomes as of yet
Start Year 2022
 
Description Understanding skin barrier towards delivery of antisense oligos 
Organisation North Carolina State University
Country United States 
Sector Academic/University 
PI Contribution We began a collaboration with Dr Giuseppe Valacchi at North Carolina State University. We have shared our ex vivo human skin model with his team towards the goals of this project and others.
Collaborator Contribution Dr Giuseppe Valacchi is an expert in skin barrier function and has provided access to his state-of-the-art equipment and methodologies towards the delivery of antisense oligonucleotides. He is also an expert in the signal pathways involved in oxidative stresses helping us understand any side effects potential formulated ASOs may have upon topical application.
Impact There will be publications from this collaboration.
Start Year 2019
 
Company Name TEN BIO LIMITED 
Description Ten Bio will be a biotechnology spin-out company from the University of Dundee with exclusive license rights to a strong IP portfolio relating to the developed technology by which discarded human skin is maintained under physiological tension. This patent pending method for testing new pharmaceutical and cosmetic products solves current industry challenges related to the use of traditional methods by retaining tissue viability and preserving the ability of the skin to respond to external stimuli. The business' first product, a ready-to-use full-thickness human skin testing product (TenSkin™), has been shown to outperform the competition in a variety of metrics and is the model that is most similar to living human skin on the body by a notable margin. The TenSkin™ technology will act as a replacement for cellular- and tissue-based models and also certain animal models in predicting efficacy and safety, enabling delivery of new cosmetic and pharma products while offering both cost savings and streamlined workflows. The company will initially offer the product complete with tensioned skin then scale through a combination of revenue and non-dilutive grant funding to develop an assembly platform which can be sold and licensed to customers enabling them to manufacture the TenSkin™ product line in-house. The TenSkin™ product will be available for sale during the first month following Ten Bio's launch. There are several competing skin or skin equivalent technologies currently available combining to a current market value in excess of $100m; however, we believe that the true scale of the market and hence the current business opportunity is much greater due to many potential customers using 'home made' models owing to a belief that the current commercially available options add little to no value. The company directors will consist of the scientific founders with support of an exceptional advisory panel consisting of industry and business experts. Ten Bio conservatively expects to generate £9.5M annual revenue by year 5. Having established key relationships with international partners and global brands with a history of acquiring innovative technologies, the company will be in a strong exit position potentially through a sale to a global pharma or cosmetics company. Based on projected revenue and profitability, the expected exit would be at least £40M. Ten Bio will be an ethical, sustainable and scalable business, creating highly skilled jobs and adding to Scotland's global economic wealth and our reputation for innovation. 
Year Established 2019 
Impact Through the university, we have submitted three patents, which were funded from previous grants. The company has yet to make an impact as trading is predicted to begin in June.
Website http://ten-bio.com
 
Description Attended PC Project patient support meeting in London 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Patients, carers and/or patient groups
Results and Impact Approximately 50-80 patients with their carers or family members attend these meetings held each year. The meeting is a 2-3 day event hosted by PC Project to bring scientists, clinicians and patients together to learn from each other.
Year(s) Of Engagement Activity 2017,2018,2019
URL https://www.pachyonychia.org/
 
Description Presented summary of PC at virtual PC meeting 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Patients, carers and/or patient groups
Results and Impact I presented a summary of the rare skin disorder, pachyonychia congenita, to an audience of patients and other scientists and clinicians as part of a half-day event to support PC patients and their families.
Year(s) Of Engagement Activity 2021
URL http://www.pachyonychia.org