Understanding prosensory specification for improved regenerative therapies in the inner ear

Lead Research Organisation: University College London
Department Name: Ear Institute

Abstract

Our senses of hearing and balance depend on specialized 'hair' cells located in the sensory organs of the inner ear. The hair cells are only produced during the embryonic development of the inner ear, and their disappearance in adult life is the leading cause of hearing loss, in particular in the ageing population. The treatments for hearing loss are limited to hearing aids or cochlear implants, and there is considerable need and pressure for new and more efficient therapies. One possible cure could be to induce hair cell regeneration in the damaged inner ear - a process that is naturally occurring in non-mammalian vertebrates. The current approaches to achieve this rely on the artificial re-activation of 'pro-hair cell' signals, responsible for the induction of hair cell formation during embryonic development. However, growing evidence indicate that the cells of the adult cochlea cannot easily convert into hair cells when exposed to those signals.
An alternative strategy might be to turn cells of the adult inner ear into 'prosensory' cells, which during normal development are the parent cells giving rise to both hair cells and their associated 'supporting' cells. A first step towards this goal is to understand how these prosensory cells are formed during normal development. Using DNA-Sequencing and bioinformatics methods, we have already identified a number of genes and signals that could be potentially be important for the formation of prosensory cells. The aims of this project are to test their functions, by artificially modifying their expression or activity during the development of the embryonic chicken inner ear. The results of this project will help us to pinpoint the specific genes and cell-to-cell communication systems that could be manipulated to trigger hair cell regeneration in the damaged inner ear. In the future, this research could open up new venues for more efficient therapies for hearing loss in humans.

Technical Summary

The prevalence of hearing loss is steadily increasing: one in six people in the UK has a hearing disability, rising to one in two for over 70 year-old. The main cause of sensorineural hearing loss is the irreversible loss of the hair cells residing in the organ of Corti, the sensory epithelium of the cochlea. A potential therapy for hearing loss could be to induce in the damaged auditory organ the regeneration of new hair cells - a process that is occurring spontaneously in non-mammalian vertebrates. However the current strategies relying on the manipulation of the molecular signals controlling hair cell differentiation alone are relatively inefficient. An alternative approach might be to re-activate the developmental signals that drive the formation of the 'prosensory' cells, which are the progenitors for both hair cells and their associated supporting cells. The essential step to achieve this is to understand how prosensory specification is regulated during ear development. We have already identified two important signals with opposing effects on prosensory specification: Notch signalling and the transcription factor Lmx1a. Using RNA-Seq screenings in the chicken and mouse inner ear, we have started to uncover some of their transcriptional targets, and several of these are components of the Wnt signalling pathway. The objectives of this project are i) to elucidate the role of Wnt/beta-catenin signalling and its interactions with Notch signalling during prosensory specification, ii) to investigate the function of specific candidate targets of Notch/Lmx1a and iii) to establish a new mouse model (Sox2-tdTomato knock-in) to investigate the transcriptional profile of otic cells at different stages of commitment towards the sensory fate. The outcomes of this research could be exploited in the future to induce hair cell regeneration by means of gene therapies or to improve existing methods for the generation of hair cells from embryonic stem cells in vitro.

Planned Impact

The main beneficiaries from this research are the biomedical and hearing research community. An estimated 250 million people suffer from hearing loss, and the prevalence of this disease is particularly high in the ageing population. The main cause for hearing loss is the disappearance of the sensory 'hair cells' of the inner ear. In this project, we will investigate the mechanisms of formation of these cells during the embryonic development of the inner ear. Our results could uncover some of the key molecular signals that regulate sensory cell differentiation. This knowledge could be used to promote hair cell regeneration in the damaged inner ear through genetic or pharmacological approaches. It could alternatively be used to guide the in vitro differentiation of stem cells into specific inner ear cell types. Both strategies are currently envisioned as future therapies for hearing loss. Hence, additional beneficiaries of our research include charities that support the development of the 'next-generation cures' for deafness, the biotechnology and pharmaceutical industry, and hearing loss sufferers.
The results of our research will be published in scientific journals with open-access policies, presented at international conferences, and some will be made available online before publication to ensure the fastest and widest possible dissemination of the outcomes of this project. The proximity of the UCL Ear Institute with the Royal National Throat, Nose and Ear Hospital will also facilitate knowledge exchange with medical student and ENT medical staff, which could in turn communicate some of the results of our research to their patients. Finally, the Ear Institute hosts regular events with hearing research charities and their supporters, during which we can directly engage with the public and wider beneficiaries of our research.
 
Description Bogue Fellowship
Amount £7,755 (GBP)
Organisation University College London 
Sector Academic/University
Country United Kingdom
Start 06/2023 
End 08/2023
 
Description Prosensory signals: from discovery to application using inner ear organoids
Amount £848,846 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 02/2022 
End 02/2025
 
Description To turn it up or to turn it down? Characterising the role of different levels of Wnt and Hedgehog signalling activity in the formation of auditory and vestibular hair cell types
Amount £120,000 (GBP)
Funding ID PA27 
Organisation Royal National Institute For Deaf People 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2021 
End 09/2023
 
Title Bulk RNA-Seq of chicken otocyst with pharmacologically induced loss-of-Wnt signalling- GEO accession GSE149310 
Description Next generation RNA sequencing of chicken otocyst with pharmacologically induced loss-of-Wnt signalling 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact The data show that several genes associated to neurogenesis are regulated by Wnt signalling in the developing inner ear. 
URL https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi
 
Title Next generation sequencing of chicken otocyst with gain- and loss-of-Notch signalling activity - GEO accession GSE196999 
Description Bulk RNA-sequencing of individual chicken otocysts, in which Notch activity was either stimulated or blocked. To stimulate Notch activity, the E2 otic placodes were in ovo transfected with a construct overexpressing Notch1 Intracellular domain (NICD1) or a control plasmid expressing mRFP1 and collected 6h or 24h later. To pharmacologically block Notch activity, E2.5 chicken otocysts were incubated in media enriched with ?-secretase Inhibitor or control condition (DMSO) for 6h or 24h. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact The dataset will be used in a upcoming manuscript on the regulation of otic neurosensory specification by Notch and Wnt signalling 
URL https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi
 
Description Zhiyong Liu 
Organisation Chinese Academy of Sciences
Country China 
Sector Public 
PI Contribution Host laboratory for team of Dr Zhiyong Liu as part of Newton Fellowship funded project to develop new Crispr/Cas9 tools for genome editing in the chicken embryo
Collaborator Contribution Training to Crispr/Cas9 techniques
Impact - Newton Fellowship awarded to Dr Liu (Royal Society and Chinese Academy of Sciences)
Start Year 2020
 
Description A fundraising 100km Challenge for RNID charity 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact I was captain of the UCL Ear Institute team (RNID: Challenge RNID (enthuse.com)) which took part in a one month-long challenge to walk/run 100km in support of RNID charity and their fundraising. The progress of walking/running and donations we collected featured in social media (Twitter, Instagram, personal and RNID blogs).
Year(s) Of Engagement Activity 2021
URL https://rnid.enthuse.com/pf/magdalena-zak
 
Description British Science week (Polish Contribution, MZ) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Explaining our research and raise awareness of hearing loss to the general public, with opportunities for questions and discussion throughout the day.
Year(s) Of Engagement Activity 2019
 
Description In2Science student summer placement 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact I designed and hosted a two-week intensive lab-based small project for the In2Science students.
In2Science is a UK-based program for A-level students from disadvantaged backgrounds that helps them to achieve their potential and progress to study STEM at university.
Year(s) Of Engagement Activity 2016,2017,2018,2019,2022
URL https://in2scienceuk.org/
 
Description In2Science students visit 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Geographic Reach Local
Primary Audience Schools
Results and Impact Visit sparked further interest of the student for a scientific career. This was the first time the lab participated to the program and I intend to carry on this activity in the future,

Plans have been discussed for future visits, feedback from the organisers was also very positive.
Year(s) Of Engagement Activity 2014,2015,2016,2017,2018,2019,2020
URL http://in2scienceuk.org/
 
Description Pint of Science UK 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Pint of Science is a worldwide science festival during which thousands of scientists simultaneously bringing their research out of the lab to share with the public in a relaxing atmosphere of a pub in almost 400 cities across 24 countries. The Research Associate and Technician on the grant were responsible for promoting the UCL PoS events by organising a launch event and disseminating information about the talks of UCL researchers during the PoS festival.
Year(s) Of Engagement Activity 2019,2020
URL https://pintofscience.co.uk/city/london
 
Description RNID Staff Summit on the 10th March 2022 at the High Leigh Conference Centre, Lord Street, Hoddesdon, Hertfordshire EN11 8SG 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact The RNID (Royal National Institute for Deaf People) is an organisation that provides information and support for deaf people and those living with hearing loss and tinnitus. This organisation also funds research projects aiming at preventing hearing loss and development for treatment for hearing loss and tinnitus. The RNID Staff Summit are meetings during which the RNID staff get together in person to collaborate and learn about what RNID is working on. At the meeting was around 100 staff as well as PhD students and Fellows funded by the RNID. The meeting had a form of a poster session in which everyone informally presented their work/projects and discuss their potential impact on the future of hearing research and benefits for the patients.
Year(s) Of Engagement Activity 2022
 
Description RNID open day for supporters at the UCL Ear Institute 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact In June 2022, As a RNID Fellow I explained my work and show the facilities in which I work to guests (mostly supporters) invited by the RNID charity.
Year(s) Of Engagement Activity 2022
 
Description Science Day: Polish Contribution (MZ & TS) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Science Day:Polish Contribution was an event targeted at a wide audience of all age groups and organised under the umbrella of British Science Festival. It was organised by the Polish Scientific Society in Abroad (PTNO), the Association of Polish Technicians in Great Britain (STP) and the Polonium Foundation (PF). The event allowed scientists, engineers, economists and sociologists to contact the society directly on general scientific issues, current research trends and the latest scientific discoveries. Vistitors could participate in popular science lectures, interactive workshops and scientific shows.
Year(s) Of Engagement Activity 2019
 
Description The World Hearing Day at the Royal National ENT and Eastman Dental Hospital on 08.03.2020 (MZ & TS) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Explaining our research and raise awareness of hearing loss to the general public, with opportunities for questions and discussion throughout the day.
Year(s) Of Engagement Activity 2020
 
Description UCL Pint of Sceince organising team 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Pint of Science is a worldwide science festival during which thousands of scientists simultaneously bringing their research out of the lab to share with the public in a relaxing atmosphere of a pub in almost 400 cities across 24 countries. The Research Associate and Technician on the grant were part of the UCL Pint of Sceince team involved in promotion of the events and organisation of a launch event. Due to the outbreak of Covid pandemic the Launch event was canceled one week before the day and the whole UCL contribution was postponed until 2021.
Year(s) Of Engagement Activity 2020
URL https://pintofscience.co.uk/events/london
 
Description World Hearing Day at the British Library 2019 (MZ) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Explaining our research and raise awareness of hearing loss to the general public, with opportunities for questions and discussion throughout the day.
Year(s) Of Engagement Activity 2019,2020