Decoding the fossil record of embryology at the dawn of animal evolution
Lead Research Organisation:
University of Bristol
Abstract
Embryology, the study of development, is pivotal to unravelling the evolutionary history of animals, and how changes to patterns of development have produced the branching events in the Tree of Life. Palaeontology can provide the only direct tests of such hypotheses but, traditionally, it has been silent in such debates because of a dearth of embryological data preserved in the fossil record. The outlook for evolutionary biology and for palaeontology was changed at once with the discovery of rich and diverse assemblages of fossil embryos in rocks deposited at the time that major animal groups were first emerging. These fossils have a huge potential for understanding developmental evolution at this critical episode of evolutionary history, but it is largely unrealised because of difficulties in distinguishing preserved biological structure from later geological mineralization, and because it is difficult to understand the 3D anatomy of an individual fossil embryo let alone the changes that took place during development from one embryological stage to another. These challenges have led to wildly differing interpretations of which animal group the fossil embryos belong to - a debate that must be concluded before evolutionary conclusions can be made. In fact the situation is so bad that although the fossil embryos are often beautifully preserved, including cellular and sub-cellular details, some scientists even doubt they belong to animals, preferring instead to interpret them as giant bacteria. Our interpretation of the fossils will be aided by analysis using a high resolution version of a medical CT scanner, which is powered by a particle accelerator and allows us to analyse the 3D anatomy of a fossil embryo, including its internal structure, based on a virtual computer model. This allows us to analyse details of an embryo's anatomy that are less than a millionth of a millimetre, revealing details of cell movements and even sub-cellular structure that are necessary to determine the embryology, affinity and, ultimately, the evolutionary importance of these half billion year old fossils. Our CT scans also reveal differences in the chemical composition of preserved biological and geological structures, aiding the interpretation of the fossils. We will determine the basis of these chemical differences and use the results to judge between conflicting interpretations of controversial fossil embryos and adults from the same geological layers. These experiments will be conducted to better understand known fossil embryos, but also to uncover the anatomy of fossil embryos and larvae that are completely new to science, in the collections of our international team which includes almost every leading scientist in the field of fossil embryos. We will also undertake rotting experiments to understand the decay of (i) giant bacteria and, (ii) the subcellular structures in animal embryos. These data will be used to guide our interpretation of the biological structure in the fossils, allowing us to decide whether the bacteria or animal-embryo model of interpretation fits best. Ultimately, our aim is to uncover the embryology of fossil embryos as a way of working out their closest living relatives, and whether the pattern of embryology has evolved between the fossil embryos and their living relatives. Collectively, these answers will reveal the role of embryological evolution in one of the most fundamental and most-debated episodes in animal evolutionary history: the establishment of the modern animal groups that we see about us today.
Publications

Bengtson S
(2012)
A merciful death for the "earliest bilaterian," Vernanimalcula.
in Evolution & development

Butler AD
(2015)
Experimental taphonomy of Artemia reveals the role of endogenous microbes in mediating decay and fossilization.
in Proceedings. Biological sciences

Carlisle EM
(2021)
Experimental taphonomy of organelles and the fossil record of early eukaryote evolution.
in Science advances

Cunningham J
(2012)
Distinguishing geology from biology in the Ediacaran Doushantuo biota relaxes constraints on the timing of the origin of bilaterians
in Proceedings of the Royal Society B: Biological Sciences

Cunningham J
(2017)
The Weng'an Biota (Doushantuo Formation): an Ediacaran window on soft-bodied and multicellular microorganisms
in Journal of the Geological Society

Cunningham JA
(2012)
Experimental taphonomy of giant sulphur bacteria: implications for the interpretation of the embryo-like Ediacaran Doushantuo fossils.
in Proceedings. Biological sciences

Cunningham JA
(2017)
The origin of animals: Can molecular clocks and the fossil record be reconciled?
in BioEssays : news and reviews in molecular, cellular and developmental biology

Cunningham JA
(2015)
Critical appraisal of tubular putative eumetazoans from the Ediacaran Weng'an Doushantuo biota.
in Proceedings. Biological sciences

Cunningham JA
(2016)
A multicellular organism with embedded cell clusters from the Ediacaran Weng'an biota (Doushantuo Formation, South China).
in Evolution & development
Description | Fossil embryos are a new class of fossils that have the potential to provide fundamental new insights into the pattern and processes underpinning the emergence of animal bodyplans in the Neoproterozoic and Cambrian. However, realising this potential requires an understanding of the processes that lead to the fossilization of animal embryos, a means of discriminating mineral replication of biological structure from later diagenetic mineralization of no biological significance, resolution of phylogenetic affinities in this light, and the reconstruction of meaningful patterns of embryology. We have sought to meet these challenges: 1. Established a new protocol to characterise chemically and physically the different phases of mineralization that replicate biological structure versus infill voids left after biological structures have rotted away. We applied this to the Neoproterozoic Doushantuo fossil deposit and discriminated among competing interpretations of phylogenetic affinity. 2. We tested the hypothesis that the Doushantuo fossils represented giant sulphur reducing bacteria through experimental taphonomy, showing ultimately that the fossils are compatible with animal embryos but not sulphur reducing bacteria. 3. We elucidated the later embryological stages of the Doushantuo fossils, revealing stages that are entirely incompatible with the prevailing interpretation that they represent animal embryos. Rather, we conclude that they represent encysting protists, perhaps akin to the mseomycetozoans, not animal relatives of animals. 4. We analysed and refuted claims of a minute bilaterian, Vernanimalcula, in the Doushantuo deposit. 5. We elucidated the embryology of Olivooides and arbitrated among competing interpretations of its phylogenetic affinity. |
Exploitation Route | none obvious These outcomes were exploited through academic publication, presentation to public and academic audiences at meetings, conferences, etc. |
Sectors | Education,Culture, Heritage, Museums and Collections |
Description | Swiss Light Source, non PX Beamlines |
Amount | CHF 448,000 (CHF) |
Organisation | Paul Scherrer Institute |
Sector | Academic/University |
Country | Switzerland |
Start | 01/2015 |
End | 07/2016 |
Title | Data from Ferrón et al. 2020. Computational Fluid Dynamics Suggests Ecological Diversification among Stem-Gnathostomes. Current Biology. |
Description | This dataset contains COMSOL Multiphysics files including computational fluid dynamics analyses on three dimensional models of eight taxa of Osteostraci (i.e., Boreaspis, Cephalaspis, Hemicyclaspis, Holeaspis, Kiaeraspis, Spatulaspis, Stensopelta, and Tremataspis). Tom Davies is Deputy Data Steward. |
Type Of Material | Database/Collection of data |
Year Produced | 2020 |
Provided To Others? | Yes |
URL | https://data.bris.ac.uk/data/dataset/1bjnv53uzx5dm2nw0q2tdtbqji/ |
Title | Data from Landon et al. Cellular preservation of excysting developmental stages of new eukaryotes from the early Ediacaran Weng'an Biota |
Description | X-ray tomographic slice data from 21 ediacaran microfossils |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Title | Data from Sun et al. (2020) Nucleus preservation in early Ediacaran Weng'an embryo-like fossils, experimental taphonomy of nuclei and implications for reading the eukaryote fossil record. Interface Focus. |
Description | This dataset contains three dimensional X-Ray tomographic datasets of fossil specimens of Megasphaera from the Ediacaran Weng'an Biota at 54 Quarry, Weng'an County, Guizhou Province, South China. Tom Davies is Deputy Data Steward. |
Type Of Material | Database/Collection of data |
Year Produced | 2020 |
Provided To Others? | Yes |
URL | https://data.bris.ac.uk/data/dataset/pxup7vdmg25r2sl3kr00y5cu6/ |
Title | Data from Yin et al. (2019) The early Ediacaran Caveasphaera foreshadows the evolutionary origin of animal-like embryology. Current Biology |
Description | Tomographic data and associated computed tomographic models |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Title | Data from Yin et al. (2020) Developmental biology of Helicoforamina reveals holozoan affinity, cryptic diversity and adaptation to heterogeneous environments in the early Ediacaran Weng'an Biota (Doushantuo Formation, South China). Science Advances |
Description | This dataset contains three dimensional X-Ray tomographic datasets of fossil specimens of Helicoforamina wenganica from the Ediacaran Weng'an Biota, Guizhou Province, South China. Tom Davies is Deputy Data Steward. |
Type Of Material | Database/Collection of data |
Year Produced | 2020 |
Provided To Others? | Yes |
URL | https://data.bris.ac.uk/data/dataset/tznl7b6dt7kr23cd1d5eokvcz/ |
Title | Tomographic data of tubular fossils from the Ediacaran Weng'an Doushantuo biota |
Description | X-ray tomographic data of tubular fossils from the Ediacaran Weng'an Doushantuo biota. Data collected to examine internal anatomy of these fossils, which have previously been interpreted as animals similar to tabulate corals. |
Type Of Material | Database/Collection of data |
Year Produced | 2015 |
Provided To Others? | Yes |
Title | Tomographic data on the developmental biology of the Early Cambrian cnidarian Olivooides |
Description | Three dimensional micro-CT and SRXTM data of various specimens of Olivooides including tomographic slices, segmentation data and 3D models |
Type Of Material | Database/Collection of data |
Year Produced | 2016 |
Provided To Others? | Yes |