Environmental determinants of IVF treatment

Lead Research Organisation: University of Edinburgh
Department Name: Sch of Geosciences

Abstract

Air pollution and other environmental characteristics are associated with reproductive outcomes and have been shown to increase the risks of preterm birth and low birthweight as well as in utero fetal growth. Very recent evidence has also suggested that exposure to ultraviolet radiation (UVR) during first trimester may be protective against the risks of these birth outcomes. However, although the period around the time of conception (periconception) and embryo implantation are critical for successful and healthy pregnancy very few studies have examined whether air pollution affects conception and none have examined possible associations with UVR exposure despite plausible pathways connecting both exposures. The biggest challenge is the practical problem of accurately identifying the periconception period. One approach that can overcome this is to utilise data on infertility treatments such as In Vitro Fertilisation (IVF) where exact dates of the various stages of an IVF treatment cycle including date of occyte retrieval, embryo transfer and of course date of delivery (where treatment has been successful) are known. A register of all assisted reproduction treatment cycles carried out by fertility clinics in the UK since 1991 to the present day is maintained by the UK Human Fertilisation and Embryology Authority (HFEA) and represents the largest such national register in the world. This study proposes to make novel and unique linkages between the HFEA register and temperature, air pollution and UVR exposure data to examine the association of air pollution and UVR with IVF treatment outcomes. This linkage will be based on the individual's postcode of residence and fertility clinic location. For the subset of Scottish individuals in the register with a recorded birth, we will also link to information recorded at delivery which is contained in the Scottish Morbidity Record 02 which includes more detailed contextual information about the mother. We will examine two outcomes; the odds of successful embryo implantation and the odds of live birth. The project will utilise existing air pollution data that was developed by a member of the current project team in a previous study and will generate and produce estimates of UVR exposure from satellite based irradiance data.

The project has significant potential impacts. Infertility and its associated treatment is a traumatic experience with adverse effects for wider health outcomes as well as associations with family/relationship breakdown and financial problems. The results from this study will improve our understanding of potentially modifiable risk factors for failed infertility treatment and will inform potential policy recommendations relating to managing environmental exposures for individuals undergoing fertility treatment. The HFEA, as a stakeholder in the research are interested and supportive of the project and findings from the project will be presented to them at a dissemination event with an audience including lay members, patient representatives and the general public. As part of the project we will develop a number of new resources including a new dataset of UVR exposure that will be available for other population based studies and the establishment of a new and novel linkage between ART treatment register data and environmental exposure data that will assist future projects. In the future, we envisage that the results will be used as a basis for more costly experimental research to investigate more fully possible mechanisms and pathways that may underlie any observed associations.

Keywords: IVF treatment; Ambient air pollution; UV radiation; Data linkage

Planned Impact

The proposed research will produce results of interest to a number of relevant stakeholders. Firstly, the scientific community in the UK will benefit the establishment of the approach and feasibility of linking the HFEA register to spatio-temporal environment data and will provide a novel linkage which could be utilised in future work. The findings will advance our understanding of the effects of UVR and air pollution exposure for IVF treatment success and therefore strengthen the existing evidence base. The project will also develop and generate a UVR exposure dataset based on satellite derived irradiance data. The resulting dataset and the techniques used to create it will be wider of interest to other studies interested in population based UVR exposure. Researchers involved with the project will benefit from the pooled expertise that the project brings together and the potential for spinoff projects that emerge from this new collaboration as the project progresses. In particular, it is envisaged that the results from this relatively low cost linkage study could provide impetus for larger and more costly studies which focus on identifying mechanistic pathways of both UVR and air pollution.

The proposed research will also have impact for regulatory and policy bodies in Scotland and the rest of the UK. The Human Fertilisation and Embryology Authority (HFEA) who hold and supply the register on which the study is based have expressed interest in the research. Their role is to licence UK fertility clinics and to monitor research as well as to provide impartial and authoritative information to the public. The HFEA have indicated interest and support for the project and would request a lay summary document to be published on their website together with links to any academic outputs that are produced. They would also be keen to host a dissemination event to be held in London to be attended by both members of the HFEA which would include lay members and patient representatives and the general public. A letter outlining the support of the HFEA and their contribution towards this event is attached. The research would also be of clear interest to the Infertility Network UK, a patient advocacy group who work closely with the HFEA and we would look to disseminate a short summary of the project of the project findings to them.

This project is an ideal exemplar to continue the crucial work the of the Farr Institute in engaging the public in health informatics research. Tom Clemens, who is a research fellow with the Farr Institute, in Scotland and Longitudinal Studies Centre Scotland, has, in collaboration with the Farr Institute and the Longitudinal Studies Centre Scotland previously designed and delivered public engagement events with the aim of informing the public about how we use and link their data for research purposes and illustrating the benefits of the resulting research. The project will work closely with the public engagement team at the Farr Institute to produce and deliver a similar event using the results from this work as an exemplar.

A number of formal academic outputs will also be produced. The novel linkages involved in the project, the international significance and uniqueness of the HFEA register and the relative sparseness of existing evidence point towards perhaps 2-3 publication in international medical and environmental health journals. As well as this, results will be presented at a national scientific conference such as the international society for environmental epidemiology, the British Fertility Society annual conference or the International Population Data Linkage conference.

Publications

10 25 50
 
Description Despite the difficulties we have encountered in this project (outlined below) we have achieved a number of important outcomes in this project. We have been able to complete our first objective which was to establish the feasibility of linking the HFEA register to the Community Health Index (CHI) in Scotland. This linkage of the HFEA register to the CHI has been completed opening up the possibility for future studies to link more widely to the collection of national NHS datasets that are held by the electronic Data Research and Innovation Service (eDRIS). The linkage process was very successful with close to 100% of records being successfully matched with records in the Scottish health system. Work to link this data to environmental exposure data and examine the original research questions is ongoing.

Other key developments relate to the development of new technical and data infrastructure particularly in the handling of large dimension spatio-temporal environmental data and approaches to enable linkage of this data to securely held and sensitive health data. For the UV data we developed a method for estimating individual exposure to UVA and UVB radiation using satellite data available on the web and have produced a database of these data. This data will be made available for other projects and is currently being used in separate projects to examine the association of UV exposure with cardiovascular, pregnancy and schooling outcomes. This work has produced 2 publications with further publications in preparation or under review. Secondly, we have developed a batch processing technique using the R statistical software language which queries, downloads and processes raw satellite UV data into epidemiological useful exposure data with relevant spatial identifiers to enable it to be linked to health data.
Exploitation Route Outputs developed from this study (UV exposure data) are currently being used in ongoing academic projects. These projects have resulted in two published academic articles and a number of further publications under review or in preparation. The establishment of a process by which large environmental data sets can be linked to administrative health data held by eDRIS will also make it easier for future projects to complete such linkages. The completion of linkages between HFEA register data and national health data in Scotland will also result in a dataset with a number of opportunities for important future work.
Sectors Environment,Healthcare

 
Description The principal non-academic sources of impact for this project has been in terms of public engagement, particularly in the context of informing the public about how their health data is used for research purposes. Though the project has been unable to produce substantive research findings due to significant delays in obtaining permissions for completing the process of obtaining and linking the data, public feedback on the proposed project has been overwhelmingly positive in both of the public engagement activities conducted as part of this study. The project has been used as a case study to illustrate the wider usage of routine health data for research purposes and to educate and inform the public as to why these studies are important and how they might improve our understanding of key research questions. These activities are a key condition underpinning research use of such data and demonstrating public support of exploratory and pilot projects such as this one has wider impacts in terms of garnering public support for other similar projects using sensitive health data.
First Year Of Impact 2017
Sector Healthcare
Impact Types Societal

 
Title Improvements to the process of linkage of environmental variables to sensitive health data 
Description Because of the sensitive nature of the health data used in this project (where risks of disclosure of individual identities must be minimised), linkages between different datasets is conducted with a separation of functions approach. This means that researchers are not involved in the linkage process and do not see potentially identifying information. However, in this project we required to link high dimension environmental data (spatially and temporally resolved UV data) numbering many hundreds of millions of records. Without knowing which postcodes existed in the health data and therefore which environmental records needed to be supplied we were required to provide the entire environmental database for linkage. This was challenging due to its size and the time and computing resources needed to link a database of this size this to the health data. Following discussion with the electronic Data Research and Innovation Service (eDRIS) at the NHS we developed a number of changes to the existing system for such linkages. Now, such datasets will be held permanently by eDRIS as part of their standard data holding. This will also make the data more readily available for wider research projects in a format that simplifies the linkage process. 
Type Of Material Improvements to research infrastructure 
Year Produced 2019 
Provided To Others? Yes  
Impact The main impact of this aspect of the research has been to simplify the process by which large dimension environmental data can be linked to sensitive NHS health data. 
 
Title R script for downloading and processing UV data 
Description The project used satellite data to estimate UV exposure available from the web. This data was comprised of millions of cells of information corresponding to a UV value indexed by spatial cell area and day of the year. Extensive data processing steps were required in order to turn each file into useful exposure data that could be linked to existing health data for the temporal period that was required. To do this we developed a batch processing script in the R statistical programming language which automated the process of querying the web archive, extracting and downloading relevant data files, converting from binary format into flat CSV files, merging and combining the datasets together and attaching relevant spatial identifiers and linkage variables to enable linkage to the health data. The script allows users to quickly and easily download and process raw files from the web location into a format that is useful for epidemiological studies as well as making it easy to download new and updated files from the server as they are made available. 
Type Of Material Improvements to research infrastructure 
Year Produced 2017 
Provided To Others? Yes  
Impact The script has been used already in new and ongoing collaborative projects. It has been used to assist with downloading UV exposure data for studies looking at the effect of UV exposure for myocardial infarction and will be used in upcoming projects looking at hospitalisations more generally. 
 
Title Creation of a UV exposure dataset for the UK 
Description We have developed a dataset consisting of spatially and temporally resolved Ultraviolet downward radiation values for use in epidemiological studies. Global 5km Ultraviolet Radiance (UVR) irradiance data is produced by the Japan Aerospace Exploration Agency (JAXA) using satellite measurements and is available to download from the web in binary format. Daily resolution data from 2000 to present day was downloaded from which we extracted UVA and UVB values for each latitude and longitude on earth. We then deleted any points that were not contained within the UK and attached postcode values to the remainder allowing linkage to health records via date of treatment and postcode. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact This data has been used in a number of ongoing collaborative and multidisciplinary projects. In partnership with researchers at the University of Glasgow the data has been used to examine effects of UV exposure for outcomes including vascular outcomes such as acute myocardial infarction, pregnancy outcomes including pre-eclampsia as well as to examine whether UV exposure can explain seasonal patterns in pregnancies where the child goes on to have special educational needs. 
 
Description ESRC Festival of Social Science 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact This event was part of the 2017 ESRC festival of Social Science and was organised in collaboration with the Administrative Data Research Centre - Scotland. The main purpose of the event was to tackle the issue of how data, which is being used for purposes other than that which they were originally collected, can raise concerns about privacy and about individuals' control over their own data.The event was designed to showcase the use of administrative data for the purposes of research; to illustrate why individuals data is used, the kinds of questions that it can answer and the substantial societal benefits that such data can provide. The event was highly interactive and included substantial audience participation and discussion particularly around how the audience viewed their data being used in this way and to challenge perceptions they had about how and why data was used for these kinds of research purposes. My project generated particularly interesting discussion and highlighted in particular how the public saw this project as both important and one which they were overwhelmingly supportive of in terms of its potential benefits to wider society. Many audience members reported that the event had positively changed their understanding of research using administrative data and the positive role it can have in wider society. This is an important source of impact as it is generally understood that in order for this research to be acceptable it must have public benefits, or to be in the public interest.
Year(s) Of Engagement Activity 2013,2017
URL https://www.ed.ac.uk/arts-humanities-soc-sci/research-ke/our-research/esrc-festival-of-social-scienc...
 
Description Lay members panel 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact The Administrative Data Research Centre - Scotland maintains a public panel comprising of lay members of the public. It's purpose is to provide a forum for gaining a public perspectives on new research using administrative data. A lay summary of the project was presented to 6 panel members. Overall, the panel were highly supportive, enthusiastic and engaged with the proposed research. Many of the panel reported having had personal experience of IVF treatment within their close families and were surprised but pleased that such research is being carried out. They noted limitations with the design of the research but acknowledged the pilot nature of the study and were pleased to learn that the intention of this initial low-cost study would be to justify additional investment in future research. One member of the panel has been in touch subsequently to provide additional feedback and has requested that they be informed about the projects progress and any research findings that may arise.
Year(s) Of Engagement Activity 2017