A diet for all seasons: the role of intra-annual variability in the evolution of hominin diet in East Africa

Lead Research Organisation: UNIVERSITY OF OXFORD
Department Name: School of Archaeology

Abstract

Dietary change is a major driver of evolution amongst mammals, including early hominins (members of the human lineage). Recent developments in stable isotope analysis have revolutionized our understanding of early hominin biology and behaviour by allowing quantification of aspects of the diets of individual fossil hominins. Carbon isotope analyses of fossil hominin teeth have revealed a major dietary transition after 4 million years ago (Ma), from a concentration on C3 plants (leaves, fruit and nuts from trees, shrubs, and herbs) to diets extended to include tropical C4 plants (grasses and sedges) and/or animals. The biological significance of this innovation, and its relationship to the expansion of seasonal grass-dominated environments, remains unclear. The degree to which individuals relying on C4-based resources shifted their diet seasonally to include more C3 foods when available, or specialized in C4-based foods year-round, has profound implications for the selective pressures associated with resource availability and competitive interactions with other mammals. We know that the proportions of C4 resources varied strongly between individuals after ca. 3.9 Ma, suggesting unusual individual flexibility. Indirect evidence from living human and non-human primates suggests that hominin diets may also have varied seasonally, yet there is no direct evidence on the scale and pattern of such variability.

The aim of this study is to evaluate the evolution of dietary variability in fossil hominins in eastern Africa from 4 to 1 Ma. Previous isotopic analyses of hominin fossils demonstrate substantial dietary variability between hominin individuals among some species. However, they relied on generating a single bulk isotope value per tooth, and therefore could not address variability within the lifetimes of individuals. Mammal teeth grow incrementally, and intra-tooth stable isotope profiles represent life-history archives of individual humans or animals during the period of tooth formation. Thus it is possible to measure seasonal-scale diet changes in fossil hominins and other primates by generating multiple isotope values per tooth using laser ablation microsampling. This approach has been successfully applied to a wide range of mammalian herbivores, as well as humans, and fossil hominins from South Africa. The latter study, conducted over 10 years ago, is significant because it demonstrates the validity of this approach in hominins, but it was not possible to evaluate long-term changes in dietary variability due to the restricted time span of fossils preserved in southern Africa. This approach has not yet been extended to eastern African fossil hominins, due to restrictions on isotopic sampling of fossil specimens. With the collaboration and full support of the National Museums of Kenya, it is now possible to evaluate long-term changes in dietary variability in eastern Africa using fossil hominins spanning the last 4 Ma.

For comparison, we will also include extinct baboons, which show a dietary transition towards increasing reliance on C4 foods that partly mirrors hominins, to understand the relationship between C4-feeding and intra-annual dietary variability in a parallel lineage of terrestrial, large-bodied primates. To provide a modern baseline to ground other ecological inferences in the fossil record, we will conduct an isotopic study on modern savanna-dwelling baboons, which are often used as ecological models for early hominins. We use feces to provide an isotopic record of diet with high time resolution, easily capable of recording seasonal-scale changes, to better understand how carbon isotopes track known seasonal variation in the consumption of grasses and sedges, and what influences these shifts. Isotopic variation in feces will be compared to enamel from teeth collected from the same population.

Planned Impact

Human origins and human diet are both topics of longstanding public interest. Research that deals with both therefore is likely to be of broad interest to the public. Our project can also provide a vehicle for illuminating how science 'works', and how we know what we think we know. Therefore, our main focus for knowledge exchange is on science enrichment in general, and for school-age children in particular. Our proposed study will potentially benefit two primary audiences:
(i) the public in the UK and internationally, with an interest in human health and biology. Diet is a particularly important biological topic of discussion in the media and popular literature, often focused on identifying diets that are optimal for human health given our evolutionary history. These discussions are often poorly informed about the potential biases and uncertainty in evolutionary investigations, and often mistakenly assume that there is a single ancestral 'palaeo' diet characteristic of early humans. Our study does not likely have immediately identifiable benefits related to economic performance or improvement to the effectiveness of public policy, but may indirectly enhance the quality of life and health by generating knowledge and drawing attention to the inherent variability in the evolutionary history of human diets.
(ii) the Kenyan public, which is both significantly under-served by efforts to disseminate scientific knowledge while at the same time responsible for globally important natural and cultural heritage related to human prehistory. The National Museums of Kenya is a nationally and internationally highly-regarded institution frequented by international and domestic researchers and visitors. Visitors include large numbers of local school groups from across Kenya. Impact activities will be focused on both enhancing content in the museum's human evolution public exhibit, specifically relating to what we know about the evolutionary history of the human diet, and by developing an interactive workshop for school groups. In both cases we want to emphasize how we have reached our current understanding - i.e. using human evolution to convey the scientific process. It is hoped that enhanced understanding of human evolution and scientific processes in general will benefit the Kenyan public, as well as international visitors, by encouraging individuals, particularly children, to maintain an interest in science. Most people find a view that relates to their own health and biology more accessible and engaging. We further believe that these efforts will encourage and support public policies that will ensure the long-term sustainability and growth of local scientific organizations and research.
 
Description We have now completed 5 seasons of analytical work working on fossil baboon and hominid tooth material, where the aim was to examine intra-annual-scale dietary variability in a chronological sequence of fossil hominins and modern and fossil baboons from Kenya. We applied stable carbon and oxygen isotope analysis to the enamel of the broken tooth fragment samples from the National Museum of Kenya (with partner Dr Fredrick Manthi), and were granted permission to transport them for laser ablation isotopic analysis in the lab of our other partner, Prof Thure Cerling, University of Utah. We have now completed the analytical work for all the hominin taxa ranging in age from 4Ma to ca 1 Ma years ago, and for the fossil baboons (mostly Theropithecus). These latter were compared with a first set of data for modern baboon teeth and bacon faeces from a modern collection in Laikipia where the baboons were observed and tracked. The existing isotope data has been calibrated against standards and statistically analysed. We have added to the data since the last report, now based on the new analytical facility developed and led by Dr Blumenthal at the University of Oregon, Eugene, USA.It represents an improvement in the facility we began with in the earlier phase of the project (Prof Cerling's lab). Blumenthal's facility is now one of only two of which we are aware, which is capable of fine scale carbon and oxygen isotope analysis. Crucially it's essential for very precious fossils, and for very small fossils. These recent developments have led to our academic involvement in two more recent projects. One is based in North Africa, led by Prof Nick Barton and largely funded by the Leverhulme (with small grant additions as detailed in relevant section). The other is led by PI Dr Lior Weissbrod, Haifa University and funded by the Israeli Science Foundation. Both of the latter involve the requirement for laser ablation light isotope analysis of very small microfaunal teeth, and in both cases the archaeological material is older than Upper Pleistocene. Analyses of modern material form part of the basis for both.
Amongst the important findings of the project are that the earliest hominin, Australopithecus anamensis, had a diet which remained largely C3-related but also varied more than expected through a year, while the data for Paranthropus boisei shows what we can now observe is a temporal cline in C4 plant carbon from earlier specimens (older than 2Ma) to younger, culminating in Paranthropus boisei as a virtual C4 specialist at about 1.6Ma. It turns out that all hominins, even those concentrating on C3 diets, are highly variable compared to all the data we have for other primates (Pan, Gorilla and even Papio), with the exception of Paranthropus boisei. This has led us to explore statistical approaches developed for modern ecology studies to explore niche breadth and overlap, both between and within individuals. These data have revealed that in the eastern African record, the pattern of the way in which ecological niche breadth has shifted is unique for hominins, during the period ca 4-1 Ma. Using ecological theory we have explored whether the various taxa are individual generalists or specialists, or species-level generalists or specialists. We have also explored other inter-individual variation using 1-dimensional, 2- dimensional or 3-dimensional isotope data - these findings are published in a chapter by Lee-Thorp & Blumenthal in the volume The Forgotten Lineage(s): Paleobiology of Paranthropus edited by Constantino et al (2024). A summary of all the data (hominins, Papio, modern Papio) is being submitted to a major journal (outcome unknown at this point).
The modern baboon enamel data is still under analysis given earlier to permit issues, but the modern feces data is complete. We have used some of the baboon data in a comparison with hominins for inter-individual variability, but have a further publication in planning to deal with baboon ecology per se.
Analysis of the fossil hominid and baboon oxygen isotope data from laser ablation proved to be far more predictable and less variable over time, than we anticipated, so we are also currently exploring those relationships to other published data for climate and precipitation changes in the Turkana and associated basins for a review paper in QSR (underway).
In more general terms we have added to and perfected our new analytical facility with a good deal of developmental work on analytical procedures for laser ablation IRMS analysis of inner tooth enamel sequences for both hominids (where enamel is fortunately thicker), baboons where enamel thickness is not, and are currently exploring its application to the tiny teeth of micromammals, in the context of two palaeoclimate-environmental projects that deal with the period of emergence of modern humans along coastal transects in North Africa and Israel. These are being undertaken with further funds as detailed elsewhere in this report.
Exploitation Route Our approaches can be (and will be) used by others. The isotopic analysis of baboon feces in a well-studied troop has shown results which add tremendous value to observational data which is dependent on close time-consuming observational data. We are exploring the application of direct nutritional data to this material (protein content, fibre, etc) and we expect that this combined approach will be useful to primatologists. Next we have shown that it is possible to obtain good dietary sequences from fossil tooth fragments, by analysing down the inner enamel near the dentine-enamel junction in broken fossil teeth, with minimal invasion and thus damage. Our work has also pointed to the limitations - we know better now the extent of smoothing of each tooth record - evident both from understanding of enamel development, the results, and from the comparisons of baboon teeth with the (high resolution) feces data. The future opportunity for the development of laser ablation carbon and oxygen isotope analysis (for which we have shown the utility) is its technical development to make it more efficient and routine. We have also demonstrated that the combined sequences of the two isotopes of carbon and oxygen provides a more rounded view of ecology in the sense of response to food and water availability, and in comparisons of ecological niche breadth and overlap, which are key for understanding the ecological parameters of any species. These approaches will be useful far more broadly in both the modern and fossil records but they are esp. useful for the latter. This point is also illustrated by the two new applications to very small teeth - of micromammals, which are abundant in many fossil and sub fossil sites, but so far the application of isotopic methods has been hampered the difficulties of analysing such tiny teeth. Their further advantage as we develop the laser ablation approach to the routine stage (allowing rapid analyses), is that micro mammal teeth are often abundant in fossil sites, are readily identifiable to species, and thus the results may be an order of magnitude more statistically significant than for large mammals.
Our outreach activities are focussed on the National Museum of Kenya in Nairobi. We have also taken care to announce new findings first at the annual EAPPA (Eastern African Archaeology and Palaeoanthropology) meetings.
Sectors Environment

Culture

Heritage

Museums and Collections

 
Description We are planning for a small exhibit entitled "Tales from teeth" at the Nairobi National Museum, Kenya. We have been in discussion with the head of Exhibitions and the Head of Education at the Museum, have identified a series of displays that focus on structure, nature and chemistry of human teeth, and food eaten, that importantly links modern human teeth (which appear in school biology syllabi) and the fossil teeth which they can see in the museum. However given a small budget we are downsizing the previous plans to a smaller exhibit largely focussed on an information board and tooth models.
First Year Of Impact 2024
Sector Agriculture, Food and Drink,Education,Environment,Healthcare,Culture, Heritage, Museums and Collections
Impact Types Cultural

Societal

Policy & public services

 
Description Africa Oxford (AfOx) travel grant: Visit of Dr Fredrick Manthi
Amount £4,007 (GBP)
Organisation Africa Oxford Initiative 
Sector Academic/University
Country United Kingdom
Start 03/2019 
End 04/2019
 
Title Laser ablation isotopic analysis of fossil human tooth enamel crowns 
Description We have developed a method for applying laser ablation for isotopic analysis of broken fragments of hominin teeth obtained from the fossil record. The method is minimally destructive, as it targets already fractured tooth fragments, and we have shown that it delivers a precise sequence of carbon and oxygen isotope composition from early formation (upper tooth enamel) to later formation - approximately a year of recorded information. We have tested the sensitivity of the inner enamel sequence to outer enamel, finding the former is vastly more precise. We have also tested the laser ablation derived values versus conventional techniques, finding direct correlation. We expect that this method will be applicable to more recent human fossil or sub-fossil teeth. This should greatly expand the potential applicability of the method for human life history research in the past, as well as minimise destruction of samples. We have begun a programme experimenting with this approach, directed at micro-mammal teeth. They are useful as where present are abundant in sites, so present in large sample sizes. The system has been applied experimentally in two Middle Stone Age/Middle Palaeolithic sites, and on a modern sample. 
Type Of Material Improvements to research infrastructure 
Year Produced 2022 
Provided To Others? No  
Impact This approach is applicable to more recent human fossil or sub-fossil teeth, as well as for primates where enamel analysis is more tricky because of their thin enamel. This should greatly expand the potential applicability of the method for human (or other primate) life history research in the past, as well as minimise destruction of samples. It will be published after we are in a position to publish our results for the hominid fossil teeth from Kenya. Additionally it is being developed for application in Middle Stone Age/Middle Palaeolithic sites in Africa and in the Levant, and on a modern sample. 
 
Title Development of Niche Breadth and Niche Overlap models from stable light isotope, applied to the fossil record 
Description We have explored several econiche models for estimating niche breadth and overlap in fossil collections by quantifying inter-individual isotopic variability using the following published methods developed for modern ecological breadth studies (widely published) - Inter-Quartile Range (d13C), Standard Ellipse Area calculated using SIBER (d13C, d18O), Kernel Utilization Density using rKIN (d13C, d18O), and probabilistic niche region using nicheROVER (d13C, d18O and 44Ca/42Ca). These are based and reliant on both our own data, and a compilation of published data The first publication exploiting this approach is Lee-Thorp & Scott 2024 Dietary niche variability in Paranthropus lineages in southern and Eastern Africa, Springer Nature edited volume on 'Paranthropus: the forgotten lineage(s) (provided in publications list). 
Type Of Material Data analysis technique 
Year Produced 2024 
Provided To Others? Yes  
Impact We demonstrate the means by which palaeo-scientists can explore real ecological parameters between and within populations and individuals in the distant past, using stable isotopes. The modern statistical approaches have been available for some time (since 2011). The methods and summary data we used are available in the chapter, and the full dataset we used will be deposited in public as soon as the volume is out (its in production right now). 
 
Description A novel method for reconstructing environmental change at archaeological sites in North Africa (Morocco) 
Organisation University of Oxford
Department Institute of Archaeology
Country United Kingdom 
Sector Academic/University 
PI Contribution This is a collaboration within a Leverhulme-funded project to Prof Nick Barton (Oxford); the overall award is concerned with investigating conditions in which modern humans emerged and responded to those conditions, in North and NW African sites. This a special section with separate funding (Royal Society, £11,875.00 2023-25) is to support the laser-ablation work on small mammal teeth from the archaeological sites (ca 4) excavated by the main award. The micro mammal work concentrates on oxygen isotopes since these have been shown to be strongly related in this area to precipitation amounts in an earlier study by Lee-Thorp and her PhD graduate Amy Jeffrey and co-authors (Jeffrey et al EPSL doi:10.1016/j.epsl.2015.07.012). Blumenthal is a co-PI on the Royal Society grant.
Collaborator Contribution Small award 2023-2025.Royal Society, "A novel method for reconstructing environmental change at archaeological sites in North Africa". £11,875.00 (~$14K). This is to support travel funds and laser ablation work of micro mammalian teeth. As pointed out these two micro mammal isotope projects grow out of the NERC hominin grant, since laser ablation is required for such tiny teeth, and we have built up unique experience and facilities for this purpose
Impact Development work on analysis of micromammalian teeth using laser ablation. It is multidisciplinary, also involving archaeologists, micro mammalian experts in addition to isotope specialists
Start Year 2022
 
Description High-resolution multiproxy approach for investigating climate-mediated modern human dispersal in the Middle Paleolithic microfaunal record of southwest Asia 
Organisation University of Haifa
Country Israel 
Sector Academic/University 
PI Contribution Collaboration with Dr Lior Weisbrod, micromammal expert at the Dept of Archaeology, University of Haifa, Israel. Award granted ISF 2023-2027 Award granted with Dr Blumenthal as co-PI. Total $220K. The isotope work, based on laser ablation of very tiny micro mammalian teeth will be conducted in Blumenthal's lab. The postdoc (to be appointed, will spend time in the lab). This project is built upon, and an outgrowth of the NERC award in which we developed laser ablation analysis of hominin and baboon teeth. It should be noted that there are few such labs worldwide with this capability. It is effectively 'twinned' with our partnership on a Leverhulme award to Prof Nick Barton to analyse similar material from NW Africa, as environmental/palaeoprecipitation indicators).
Collaborator Contribution The PI is Dr Lior Weisbrod, an expert in SW Asian and North African micromammals. Lee-Thorp conducted a small pilot of C and O isotope analyses of archival material from Tabun (one of the Mt Carmel sites). The results showed a significant difference in conditions in the lower levels and the project was built on this basis. Dr Weissbrod wrote and submitted the project proposal (with help in design and planning by Blumenthal and Lee-Thorp). Grant funded in late 2023. The first phase is collection and analysis of modern microfauna along a N-S transect in Israel, but this has been delayed by the current war. The next phase is isotopic analysis of microfauna from Middle Palaeolithic sites, using Blumenthal's new lab and laser ablation setup designed for tiny samples. This project concentrating on micro mammals is an outgrowth of our work using laser ablation for carbon and oxygen isotopes of hominin teeth
Impact Award granted recently (late 2023).
Start Year 2023
 
Description Paleoanthropology and biology public education 
Organisation National Museums of Kenya
Country Kenya 
Sector Public 
PI Contribution Collaboration on public education related to evolution, chemistry and biology
Collaborator Contribution Hosting team in Nairobi, Kenya; Visit of partner Dr Fredrick Kayla Manthi to Oxford, co-design of future exhibits
Impact Hosting at Kenya National Museum, access to fossils, collections and space Exhibits and workshops in planning
Start Year 2017
 
Description Visit of Dr Manthi funded by AfOx: Planning and sharing science education and outreach activities at the National Museums of Kenya with Oxford 
Organisation Africa Oxford Initiative
Country United Kingdom 
Sector Academic/University 
PI Contribution Applied for funds and arranged speaking and meeting schedule for Dr Manthi's visit to Oxford.
Collaborator Contribution Dr Manthi gave two talks including a seminar to the School of Archaeology on his own human origins research and on the challenges for Museums in Africa, and another public address at St Cross College on the role of African Museums in the "Decolonising museums" debate. Dr Manthi met with colleagues at the Oxford Natural History Museum for mutual discussions on presentation of the topic of evolution and human evolution to the public. Dr Manthi and I met with Dr Kirsty Penkman to discuss collaboration on a new research grant "Wisdom teeth: refining our understanding of mammalian evolution through dating dental enamel" NE/S010211/1 recently awarded to Dr Penkman as PI.
Impact Multidisciplinary. Plans for concrete exchanges related to exhibitions and workshops were halted by COVID pandemic in the following year (2020). Similarly, plans for travel to select fossil teeth for the NE/S010211/1 grant were put on hold.
Start Year 2019
 
Description Conference paper to Eastern African Association for Paleoanthropology and Paleontology, National Museum of Ethiopia 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 02 Aug 2017, Eastern African Association for Paleoanthropology and Paleontology, National Museum of Ethiopia, "Long-term and seasonal diet change in eastern African primates", conference paper by Scott Blumenthal
Year(s) Of Engagement Activity 2018
 
Description Department of Anthropology, University of Oregon, US 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Invited talk to faculty and students at the University of Oregon USA, given by Scott Blumenthal
Year(s) Of Engagement Activity 2018
 
Description International conference presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 2018. Lee-Thorp JA, Blumenthal SA. Isotopic variability distinguishes East African Paranthropus boisei from South African P. robustus. Invited Paranthropus Symposium. American Association of Physical Anthropologists (AAPA) Annual Meeting, Austin, Texas, US.
Year(s) Of Engagement Activity 2018
 
Description Seminar presentation, to Institute of Cognitive & Evolutionary Anthropology seminar series, University of Oxford, UK. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact This is a seminar series on human and primate evolution, and cognition research
Year(s) Of Engagement Activity 2018
 
Description Seminar presented by S.A. Blumenthal: Isotopic studies of early hominin paleobiology 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Seminar presentation to "Human Evolutionary Biology Departmental Seminar" series, Harvard University, Cambridge MA, USA. This is one of the world's top departments dealing with Human evolution
Year(s) Of Engagement Activity 2022