Fire-adapted seed traits in Cerrado species

Lead Research Organisation: Royal Holloway University of London
Department Name: Biological Sciences

Abstract

NERC-FAPESP Seedcorn Fund Collaboration Project "Fire-adapted seed traits in Cerrado species" between RHUL (UK) and UNESP (Brazil)

Fire is a global phenomenon which together with climate shapes the vegetation of natural and agricultural land. Our interaction with fire is characterised by both positive and negative aspects for mankind. Humans have long used fire including for landscape and weed management, and as tool to improve crop growth on arable land. Controlled fire is necessary to preserve the health and stimulate rejuvenation of wildland ecosystems such as the Brazilian Cerrado, the Mediterranean, as well as UK peatland and moorland. In these fire-prone regions plant regeneration is achieved to a large extent from soil-stored plant seeds. Depending on the species, environment, season and seed properties, the germination of the soil-stored seeds may be stimulated by compounds derived from the smoke or by the fire-generated heat-shock. The aim of the project is to comparatively investigate seeds from species adapted to fire-prone regions to identify novel mechanisms underpinning fire-generated heat-shock and smoke as germination cues. The derived mechanisms will be tested as tools for weed management and crop seed enhancement.

Treatment with smoke and various smoke-derived compounds can stimulate the germination of certain weed seeds. This can be used as a weed management tool to deprive the soil from weeds prior to crop seed sowing. We however do not know why this does not work with all weed species, at all ambient conditions (temperature, seasons), and what seed structures and seed coat properties determine the effectiveness of the treatment. Smoke, various smoke-derived compounds, as well as heat-shock treatment can also improve the seed quality and performance of seedling establishment of certain vegetable crops. Again, we do not know what seed structures, seed coat properties and genes are responsible for these effects and why it only works with certain crop species. To advance our knowledge in this topic the leading seed science lab of Royal Holloway University of London (RHUK, United Kingdom) will collaborate with experts for fire vegetation management and Brazilian Cerrado species properties of Sao Paulo State University (UNESP, Brazil). The FAPESP-NERC programme is especially suited to support this collaboration based on the agreement of the two funding agencies.

In the project we will investigate seeds of different fire-adapted species to identify novel mechanisms controlling how fire-derived smoke and heat-shock affect their germination, storability, and seedling establishment. This work will be conducted using methods from different science and engineering fields (including molecular biology, microscopy/imaging, biomechanical engineering, physiology) through interdisciplinary collaboration in a comparative approach with many fire-adapted species. This approach will for example identify certain seed coat properties or certain genes associated with the adaptation to fire-derived cues. Seeds of weed and crop species with similar properties/genes will then be used to test if the identified novel mechanism has potential for weed control or improving crop seed quality. The consortium has solid fire vegetation management and agri-technological expertise in these applications to provide solutions for this global challenge in climate change, healthy environment and food security.

Planned Impact

Beyond academic beneficiaries, professionals in man-made fire and wildfire, vegetation and land management and policy making are beneficiaries from our research. Both countries, Brazil and the UK have a long-established wildfire research and management experience with the Brazilian Cerrado and UK peatland and moorland as major fire-prone national ecosystems. There is a need for a consistent fire policy for Cerrado conservation in Brazil, and the non-existing national wildfire agency or strategy in England as well as the role of fire in UK peatland and moorland management are a matter of ongoing discussions. Wildfires have shaped the fire-adapted ecosystems, but the vegetation and land management consequences of the intense 2018 fires are beyond the natural fire regimes (intensity and severity). A Royal Society workshop on the interaction of fire and mankind concluded that wildfire research should be integrated across disciplinary and national academic frameworks so that research and policy can tackle 21st century fire problems. Brazil's EMBRAPA-Cenargen, which focuses on conservation and management of genetic resources of the Cerrado.

Beyond ecosystem services for natural landscapes, prescribed burning has been used for managing arable land. Farmers, the agricultural and horticultural sector, the seed technology, crop breeding and weed management industry are key beneficiaries of our Brazil-UK research project into "fire: heat-shock and smoke". Smoke water is used in to enhance germination and trigger a flush emergence in arable weed management strategies; Prof Leubner's interview "Smoking out blackgrass seeds" at the SEB Annual Meeting 2016 in Brighton is an example for this (Science Daily https://www.sciencedaily.com/releases/2016/07/160706091510.htm). The seed germination of vegetable crops can be improved with smoke water priming treatment and heat-shock of crop seeds is a technology to improve the storage resilience of commercial seed. Seed industry, including major collaboration partners of RHUL's Seed Science Group (KWS Seed SE, Syngenta, Tozer Seeds, Elsoms Seeds, Croda/Incotec, Royal Horticultural Society - RHS) are therefore key stakeholders for both aspects of our fire research: heat-shock and smoke. Brazil is a world leader in applied seed technology and many seed companies have a research base in the country. The global seed market has a value of $50billion (2012) and of this the EU ranks 3rd (20%) and Brazil 4th (6%). Seed industry in Brazil and the UK is among the beneficiaries of our research collaboration.

For the impact in potential applied follow-up projects improving Cerrado seed quality for restoration projects is also a very timely topic and crucial need. Our experience seed science and technology applied to this challenge together with the smoke water and heatshock results from the Seedcorn project will certainly be important to achieve this in applied follow-up projects. Restoration of Cerrado is of great challenge, mostly because Cerrado's resilience is being lost due to changes in land use. The use of novel direct seeding with seed technology refined native seed therefore holds great potential for preserving the Cerrado biodiversity.

Finally, there are direct and indirect socioeconomic and health impacts of fire and smoke on people and society. Fire can destroy livelihoods and smoke pollution from different sources is a public health problem. This is also a focus RHUL's Wildfire Research Hub (Leverhulme Trust) which is into fire, climate change, people & habitat protection in several global regions one of which is the Brazilian Cerrado. Their fire social-ecological and policy-related research is very different to our project into the mechanisms of fire-adapted seed traits, but there will be opportunities for synergism with fire-related impact activities and networking, especially if it is associated with the Brazilian Cerrado. The general public is also among our stakeholders.

Publications

10 25 50
 
Description NE/T004851/1 - NERC/FAPESP Global Partnership Seedcorn Fund - 'Fire adapted seed traits in Cerrado species' joint project UK-Brazil:
Our COVID-19 related grant extension request was approved and allowed to conduct our revised time plan and deliver some output.
(1) Cerrado seeds were collected in the next rainy season (from January 2021 onwards), exchange these seed lots was in March 2021 and research conducted.
(2) Germination results upon smoke water treatment and heat shock were obtained and compiled (data will be available on EIDC)
(3) Structural data of seeds were obtained based on various types of microscopy and Videometerlab MultispectralImaging
(4) RNA extraction protocols were improved and RNA successfully extracted from several seedlots and endemic species representing three families
(5) A UK-Brazil online workshop was conducted with presentation of collaboration results and guest presentations from the Leverhulme Wildfire Centre
(6) Collaboration publications are in preparation, but require some additional work for completion for which funding is currently lacking
Exploitation Route It was agreed to try to sustain the established UK-Brazilian partnership with future collaboration which requires funding. The biggest problem was that due the pandemic none of the mutual research visits were possible, especially not the visit of the Brazilian PhD student at Royal Holloway. Funding for follow-up research is needed.
Sectors Agriculture, Food and Drink,Education,Environment

 
Description NE/T004851/1 - NERC/FAPESP Global Partnership Seedcorn Fund - 'Fire adapted seed traits in Cerrado species' joint project UK-Brazil: We have successfully started our new international collaboration the COVID-19 pandemic prevented the seed exchange, networking and collaboration research which are impossible to be accomplished this year (2020). The project was extended (no-cost) for 2021. Findings were used to establish the collaboration and to engage with the Leverhulme Centre for Wildfires, Environment and Society. Routes to impact were therefore initiated, but getting there requires follow-up funding.
First Year Of Impact 2022
Sector Agriculture, Food and Drink,Education,Environment
Impact Types Societal

 
Description Seed trait variability in species of tropical savannas: testuing a new tool to improve seed trait assessment (Heloiza Lourenço Zirondi as 1-year research visitor)
Amount £3,000 (GBP)
Organisation Sao Paulo State University 
Sector Academic/University
Country Brazil
Start 02/2023 
End 02/2024
 
Title Expansion of seed and food biomechanics technology platform by a nano indentation device 
Description A Bruker TS 77 Select Nanoindentation System (ca. £130k) was acquired 2021/22 as capital equipment to expand the seed and food biomechanics technology platform. This is a key expertise of Dr Tina Steinbrecher. Nanoindentation is an established tool to determine mechanical properties of materials, such as hardness and elastic modulus, on a nano- to micrometer length scale. The main advantage of this technique is the high spatial resolution while only a small probe size is required. Nanoindentation has been shown to be a valuable tool to examine even complex biological samples. In recent years the application of nanoindentation methods in the areas of soft tissues and biological materials has increased significantly. 
Type Of Material Improvements to research infrastructure 
Year Produced 2022 
Provided To Others? Yes  
Impact Expansion of generic core technology platforms enable strengthening research. Securing unique staff expertise and expanding capabilities in multidisciplinary cross-cutting technology platforms to address the challenges across the Plant, Seed and Food Supply Chain Security and Sustainability. The vulnerability of food supply chains was exposed by COVID-19 (Garnett et al, Nature Food 1:315-318) and by the Climate Crisis. Food supply chain security and sustainability depends on quality crop seeds (input), environmental-friendly crop production and food processing. 
 
Title Expansion of seed and food imaging technology platform by a VideometerLab Multispectral Imaging device 
Description MultiSpectral Imaging (MSI) will be conducted with a VideometerLab4 device possessing 19 high power LED sources with a range from 365 nm to 970 nm. An integrating sphere provides a homogeneous and diffuse illumination, allowing spectral imaging in 5-10 seconds. For an automated reliable image analysis to distinguish between infested and 'clean' seeds, an optimised downstream analysis is needed. Nondestructive method for detecting and diagnosing seed-borne pathogens in crop seed batches 
Type Of Material Improvements to research infrastructure 
Year Produced 2021 
Provided To Others? Yes  
Impact Acquired additional funding. Expansion of generic core technology platforms enable strengthening research. Securing unique staff expertise and expanding capabilities in multidisciplinary cross-cutting technology platforms to address the challenges across the Plant, Seed and Food Supply Chain Security and Sustainability. The vulnerability of food supply chains was exposed by COVID-19 (Garnett et al, Nature Food 1:315-318) and by the Climate Crisis. Food supply chain security and sustainability depends on quality crop seeds (input), environmental-friendly crop production and food processing. 
 
Title EIDC Research Dataset: Seedcorn Fire - Fire adapted seed traits in Cerrado species 
Description Collaboration project "Fire adapted seed traits in Cerrado species" generated data will be available via EIDC: (i) Germination/Growth data will be collected for both fruit, seed and seedling types (ii) Environmental data (temperature, precipitation, etc.) in the field (GPS data, Data Logger data) (iii) Information on the fruit and seed structure (morphological and mechanical data based in images) in the form of electron/light microscope images (iv) Gene transcript abundances quantified by RT-qPCR 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? No  
Impact Too early, dataset will be uploaded in 2022 and made available to the public later together with publication 
 
Title Response of seed germination to smoke water solutions in Cerrado plant species collected between 2013 and 2020 
Description This dataset contains information about how seeds collected from Brazilian Cerrado plant species germinate in smoke water and control water solutions. Seeds were collected from site across the Cerrado between 2013 and 2020. Germination was assessed in laboratory experiments by placing seeds on wet filter paper with water and smoke water solutions. Two different methods were used. One used a commercially available smokewater, Regen 2000 and the other used smoke water produced from burning biomass collected in central Brazil. Germination was counted daily by observing emergence of radicle from the seed. The work was supported by NE/T004851/1 NERC-FAPESP Seedcorn Fund Collaboration Project "Fire-adapted seed traits in Cerrado species" between RHUL (UK) and UNESP (Brazil). 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Will be part of a collaboration publication. 
URL https://catalogue.ceh.ac.uk/id/ad4e3224-4674-47a1-ad1a-80c1c109f20c
 
Title Scanning Electron Micrographs of seed and fruits of plant species from the Cerrado region collected between 2014 and 2020 
Description This dataset contains single scanning electron microscopy images for fruits/seeds collected between 2014 and 2020 from 14 plant species found in Brazilian Cerrado as an indication of seed structure, morphology and size. The work was supported by NE/T004851/1 NERC-FAPESP Seedcorn Fund Collaboration Project "Fire-adapted seed traits in Cerrado species" between RHUL (UK) and UNESP (Brazil). 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Will be part of a collaboration publication. 
URL https://catalogue.ceh.ac.uk/id/730086fd-80cd-4f44-8b13-b6168c07c7a8
 
Description Fire-adapted seed traits in Cerrado species 
Organisation Sao Paulo State University
Country Brazil 
Sector Academic/University 
PI Contribution The Collaboration Project was extended to autumn 2021. Reason for grant extension: The coronavirus (COVID-19) pandemic has impacted our collaboration/networking project "Fire-adapted seed traits in Cerrado species" (NE/T004851/1 & FAPESP 2019/09903-0), funded by the NERC/FAPESP (UK/Brazil) Global Partnership Seedcorn Fund (GPSF 2019 call) with severe disruption and currently continues to prevent travel, research visits and seed collection/exchange between the teams in London and Sao Paulo. We however have several online meetings and are currently in the process to receive seeds from Brazil
Collaborator Contribution The Collaboration Project was extended to autumn 2021. Reason for grant extension: The coronavirus (COVID-19) pandemic has impacted our collaboration/networking project "Fire-adapted seed traits in Cerrado species" (NE/T004851/1 & FAPESP 2019/09903-0), funded by the NERC/FAPESP (UK/Brazil) Global Partnership Seedcorn Fund (GPSF 2019 call) with severe disruption and currently continues to prevent travel, research visits and seed collection/exchange between the teams in London and Sao Paulo. We however have several online meetings and are currently in the process to receive seeds from Brazil, they collected seeds.
Impact The Collaboration Project was extended to autumn 2021. Reason for grant extension: The coronavirus (COVID-19) pandemic has impacted our collaboration/networking project "Fire-adapted seed traits in Cerrado species" (NE/T004851/1 & FAPESP 2019/09903-0), funded by the NERC/FAPESP (UK/Brazil) Global Partnership Seedcorn Fund (GPSF 2019 call) with severe disruption and currently continues to prevent travel, research visits and seed collection/exchange between the teams in London and Sao Paulo. We however have several online meetings and are currently in the process to receive seeds from Brazil
Start Year 2019
 
Description GCRF Online Workshop September 2021, Keynote Talk "The roles of "coats" and hormones for crop seed quality, weed emergence and innovative precision agri-technologies" 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Organised Workshop on "Tef (Eragostis tef) and other Ethiopian "orphan" crops, focus on using seed technologies to improve tef seed quality." Talk "The roles of "coats" and hormones for crop seed quality, weed emergence and innovative precision agri-technologies". Interdisciplinary workshop was with UK, Swiss and Ethiopian researchers and practitioners and students. It was a programme bringing together work with crops and weeds, and included also social scientist to discuss Sustainable Development Goals related to the Food Chain. Programme:
12:00UK = 14:00ET Welcome by Meeting Chair Dr Tina Steinbrecher (RHUL)
12:10UK Prof Gerhard Leubner (RHUL) & Dr Said Mohammed Hassen (GCRF Project Lead, Debre Berhan University, Ethiopia) - "The roles of "coats" and hormones for crop seed quality, weed emergence and innovative precision agri-technologies"
12:40UK Dr Solomon Chanyalew Kassa (Director, Debre Zeit Agricultural Research Centre, DZARC, Ethiopia) "Tef in Ethiopia - an Overview"
13:00UK Dr Erica Rowan (RHUL) "import and export of cereals and other goods from North Africa"
13:15UK Short break

13:20UK Lena Fatelnig (RHUL) "Tef seed priming and ageing" (RHUL-DZARC results)
13:40UK Dr Solomon Chanyalew Kassa & Coworkers (DZARC) "Tef seed pelleting and field emergence" (RHUL-DZARC results)
14:00UK Dr Stephanie Swarbreck (University of Cambridge, UK) "Exploring tef root and shoot phenotypes to select for improved fied performance"
14:20UK Dr Naomi Nakayama (Imperial College London, UK) "Resilience priming of cereal crops for sustainable agricultural improvement in Ethiopia"
14:40UK Short break
14:50UK Prof Zerihun Tadele (University Berne, Switzerland and DZARC, Ethiopia) "Food security and environmental stress resilience of the Ethiopian cereal crop tef"
15:15UK Discussion of results and collaborations
16:00UK End of meeting
Year(s) Of Engagement Activity 2021