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Soil carbon and climate warming in tropical forests: using experimentation and elevation to reveal responses across space and time

Lead Research Organisation: University of Leeds
Department Name: Sch of Geography

Abstract

Climate change is predicted to release carbon stored in terrestrial ecosystems, causing a major acceleration of future climate change. This carbon release is predicted to occur through increased rates of decomposition and respiration by plants and soil microorganisms under warming. However, the acceleration could be constrained in the long-term if microorganisms adjust their community-wide physiology to metabolise less carbon under higher temperatures. Despite the significance of this potential feedback, we have little information on the magnitude and mechanisms by which it occurs in tropical forests, which contain two-thirds of global terrestrial plant biomass and a third of global soil carbon. I address this uncertainty, by combining a unique tropical forest soil warming experiment with a series of 'natural' experiments along tropical forest elevation/temperature gradients. I will use cutting-edge techniques in soil biogeochemistry and microbiology to determine the magnitude and mechanisms of carbon release from these soils under warming, and the mechanisms by which it may be constrained, particularly by the physiological and community-wide changes in microbial communities. By combining experimental study of short-term microbial responses and observational study of long-term responses across elevation gradients, I will gain unique integrated insights, enabling the extrapolation of findings to landscape scales, and providing key information urgently needed by Earth-system models. In summary, this project will directly address what has been identified as the most significant cause of uncertainty in predicting the feedbacks between climate change and terrestrial ecosystems: the magnitude and mechanisms for tropical forest soil carbon release under climate warming, and the role of microbial communities in constraining this release.

Planned Impact

The project 'Climate warming effects on tropical forest soil carbon: below-ground responses to experimental warming and elevation' will have significant academic, social and economic benefits for the UK, the partner countries and the world. The impacts will be wide reaching and continue beyond the duration of this proposal.

The project will directly address a major knowledge gap identified in the fifth assessment by the Intergovernmental Panel on Climate Change (2013), the magnitude and mechanisms for Earth-climate carbon-exchange feedbacks in tropical regions. The results from this project will, therefore, be of high interest to the global research community, governments and policy makers.

Scientists will benefit from the experiment, as outlined in the Academic Beneficiaries section. The immediate beneficiaries will be the already extensive network of international research collaborators and institutes - with UK scientists and institutes leading the work. The beneficiaries will develop and extend beyond these, as the project will develop and explore further aspects of climate change impacts in tropical forests, including climate modellers, community ecosystem ecologists, plant physiologists, researchers working at different trophic levels and scales. These developments will be made during the course of the project as our preliminary findings are presented at international conferences and published in peer-reviewed journals.

The SWELTR experiment will have a long-lasting scientific and education legacy, providing opportunities for research and student projects, education to students and lay audiences. The high profile of the experiment will provide opportunities for outreach work on climate change, including talks, tours and articles in newspapers and magazines, to UK, Scottish and international audiences. The project has already attracted media attention (recently conducted interviews for general interest publications 'Tropicos' and 'The Smithsonian Magazine') and was announced in a White House Press Release by the Obama Administration on World Soils day 2016.

The elevation gradient studies will have societal impacts that will benefit the field site countries (Panama, Peru, Colombia) by providing research opportunities and building research capacity, especially in the developing economies of Peru and Colombia. I will develop this work and to build UK-partnerships through applications to host workshops and student exchange programs through the Newton fund, which has prioritized development of climate change and biodiversity research in these countries. I will develop outreach programs in the vicinity of the research sites, including a school program to engage in talks and activities on climate change and environmental education themes. The elevation gradient studies will be long-term research assets for the respective countries, by engaging with local universities and supervising local student researchers. This approach was successfully implemented for the elevation gradient studies in Peru (led by Prof Silman, Prof Malhi, Prof Meir), leading to numerous Peruvian graduates and PhDs and new research grants led by The Catholic University of Lima. This model would be replicated for the Colombian elevation gradients in this proposal, stimulated by a new initiative by the Colombian government to develop natural reserves and prioritize ecological research in areas of tropical forest.

Publications

10 25 50
 
Description The award will deliver new understanding of how climate warming predicted this century will affect carbon stores held in tropical soils, which represent about a third of global soil carbon stores. The project is using a field warming experiment in tropical forest in Panama - and a series of natural temperature gradients on tropical mountains - to understand how soil CO2 emission and the microbial community that drives this emission will change under future warming.

Key results thus far (emerging since this award began), include:
1) an important finding that soil microbial diversity decreases with warming, with potentially major consequences for functioning of soils, plant-soil interactions and CO2 release to the atmosphere (published in Nature microbiology)
2) a parallel finding that tree seedling growth declines under soil warming, with the suggestion that this growth decline is related to a decline in the efficiency of plants to fix nitrogen (through their nitrogen-fixing microbial symbionts) (published in Biotropica)
3) a finding from an elevation gradient in Peru that microbial growth rates can rapidly adapt to temperature changes (within 2-11 years), suggesting that microbial community processes by shift as climate warming progresses (published in Soil biology and biochemistry)
4) a finding from an elevation gradient in China that soil microbial carbon use efficiency shifts are mostly strongly determined by differences in tree species diversity, demonstrating an important relationship between plant carbon substrate inputs to soil on the soil microbial community. (published in Global Change Biology).
5) a conference paper that shapes new directions for the field of climate change and biogeochemical cycling research in the tropics, developing on this current project and which are to be fostered in upcoming grant proposal (published in New Phytologist).







work is ongoing.
Exploitation Route Although the project remains ongoing, it has already generated some very important findings that will open up new fields of emerging research in this area:

1) will climate change impacts on the soil microbial community in turn impact soil functions and create plant-soil feedbacks?
2) can we identify which soil microbes are resilient to change?
3) how are soil microbial-mineral interactions being affected by climate change (both the stabilisation and release of mineral associated organic matter)?

These themes also relate to the future resilience of tropical soils to climate change, and I expect this work will open a further field of investigation into how we can use the information on climate change (e.g. heat) impacts on soil microbes and soil processes, to better understand how soil management and soil conservation can be used to increase soil carbon storage and biodiversity and thus for climate change mitigation. These questions are of critical importance in tropical ecosystems, given their major influence on the global carbon cycling and due to lack of studies in tropical regions.

The warming experiment leveraged in this proposal remains the only existing soil-profile warming experiment in tropical forest globally, therefore it remains a very important scientific facility and future work will be developed to use this experiment to understand long-term climate impacts on tropical soils (>10 years of heating).
Sectors Environment

URL https://doi.org/10.1038/s41564-022-01200-1
 
Description The project has been cited in the recent Intergovernmental Panel on Climate Change Report. Therefore providing evidence that the work is of significant importance for governments and policy makers to understand the effects of climate change on the land surface.
First Year Of Impact 2022
Sector Government, Democracy and Justice
Impact Types Policy & public services

 
Description Citation in Climate Change 2021: The Physical Science Basis. Contribution of Working Group I to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change
Geographic Reach Multiple continents/international 
Policy Influence Type Citation in other policy documents
 
Title (high-temp/16s) No 0. Raw 16S rRNA fastq data files for the high-temp SWELTR study 
Description This repository contains the RAW sequencing data for the high-temp SWELTR study. Trimmed reads (with primers removed) are deposited at the European Nucleotide Archive, study accession number PRJEB45074 (ERP129199). Raw fastq data files are named by plot number (P1-P10). Names containing the suffix -8C are samples warmed by +8°C. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Nottingham, A.T., Scott, J.J., Saltonstall, K. et al. Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt. Nat Microbiol 7, 1650-1660 (2022). https://doi.org/10.1038/s41564-022-01200-1 
URL https://smithsonian.figshare.com/articles/dataset/_high-temp_16s_No_0_Raw_16S_rRNA_fastq_data_files_...
 
Title (high-temp/ITS) No 0. Raw ITS fastq data files for the high-temp SWELTR study 
Description This repository contains the RAW ITS sequencing data for the high-temp SWELTR study. Trimmed reads (with primers removed) are deposited at the European Nucleotide Archive, study accession number PRJEB45074 (ERP129199). Raw fastq data files are named by plot number (P1-P10). Names containing the suffix -8C are samples warmed by +8°C. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Nottingham, A.T., Scott, J.J., Saltonstall, K. et al. Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt. Nat Microbiol 7, 1650-1660 (2022). https://doi.org/10.1038/s41564-022-01200-1 
URL https://smithsonian.figshare.com/articles/dataset/_high-temp_ITS_No_0_Raw_ITS_fastq_data_files_for_t...
 
Title Seedling growth responses to experimental soil warming in a tropical forest, Panama, 2016-2022 
Description Growth parameters for tree seedlings in a lowland tropical forest in Panama, subject to experimental soil warming. The experiment is situated at the Soil Warming Experiment in Lowland Tropical Rainforest (SWELTR) on Barro Colorado Island in Panama, where the whole soil profile is subject to warming by 4-degrees. Seedling species are Inga laurina, Ormosia macrocalyx, Tachigali versicolor, Lacmellea panamensis, Protium pittieri and Virola surinamensis. Data are seedling parameters: relative growth rates, height change over time, herbivory index, light-saturated photosynthesis (Amax), leaf chlorophyll concentration, light (photosynthetic photon flux density; PPFD). We also determined soil nutrient (N and P) mineralisation for the same period using in situ ion-exchange resins each month. Data were collected over the period 2016 to 2020, following 3 years of soil warming. Photosynthesis and leaf chlorophyll content index data were collected in field campaigns during 2019 and 2022, respectively. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
URL https://catalogue.ceh.ac.uk/id/3a4aabba-e790-4ac3-b845-936790768330
 
Title Warming-induced decline in tropical soil microbial diversity and community-adaptation do not explain increased CO2 emission 
Description This collection contains data and data products for the SWELTR High-Temperature experiment. Here you will find 16S rRNA and ITS sequence data as well as many other data products from the study. The number of each dataset corresponds to the workflow number on the project website. A direct link to the workflow page is provided in the REFERENCES section of each dataset. Data pertaining to the 16s rRNA analysis has the prefix (16s) and data pertaining to the ITS analysis has the prefix (ITS). See below for links to the raw data on the European Nucleotide Archive (ENA). 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Nottingham, A.T., Scott, J.J., Saltonstall, K. et al. Microbial diversity declines in warmed tropical soil and respiration rise exceed predictions as communities adapt. Nat Microbiol 7, 1650-1660 (2022). https://doi.org/10.1038/s41564-022-01200-1 
URL https://smithsonian.figshare.com/collections/Warming-induced_decline_in_tropical_soil_microbial_dive...