Altered RNA metabolism in neurodegeneration
Lead Research Organisation:
King's College London
Abstract
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Technical Summary
The UK Dementia Research Institute (UK DRI) is an initiative funded by the Medical Research Council, Alzheimer's Society and Alzheimer's Research UK. Funding details for UK DRI programmes will be added in 2019.
A wide variety of neurodegenerative diseases are caused by mutations in RNA binding proteins. However, the pathogenic mechanisms leading to these disorders are not yet well understood. We study the FUS gene (Fused in Sarcoma), which encodes a conserved RNA-binding protein. Mutations in this gene can lead to the development of Amyotrophic Lateral Sclerosis (ALS), the most common motor neuron (MN) disease in human adults. While FUS is a nucleocytoplasmic shuttling protein, it is mainly nuclear at steady state. Most ALS-associated FUS mutations disrupt the nuclear localization signal (NLS), leading to nuclear exclusion and cytoplasmic FUS aggregates in neurons and glial cells of these ALS patients. FUS is also a major protein component in pathologic cytoplasmic inclusions in some cases of Frontotemporal Lobar Degeneration (FTLD-FUS). However, unlike for FUS-linked ALS, the molecular cause for cytoplasmic mislocalisation in FUS-linked FTLD is unknown and no vertebrate model for FTLD-FUS is available. Therefore, the potential pathomechanisms in FUS-linked FTLD will have to be inferred from the insights from FUS-linked ALS models and its physiological functions.
FUS functions in several processes required for proper gene expression, such as transcription, pre-mRNA splicing, and miRNA processing. However, its precise role in these processes and most of its targeted RNAs are, as of yet, unknown. The combination of this lack of knowledge with the lack of FTLD-FUS models has led me and my research group to the conviction that understanding the biological function(s) of normal FUS will be one of the keys to gain insight into the role of FUS-associated neurodegeneration. Furthermore, this will allow us to fully interpret our results from our parallel investigation on the pathomechanisms of FUS-linked ALS using in vitro and in vivo models of disease. The results of our research are expected to reveal the molecular mechanisms implicated FUS-associated ALS and FTLD and identify targets for the development of therapeutic approaches.
A wide variety of neurodegenerative diseases are caused by mutations in RNA binding proteins. However, the pathogenic mechanisms leading to these disorders are not yet well understood. We study the FUS gene (Fused in Sarcoma), which encodes a conserved RNA-binding protein. Mutations in this gene can lead to the development of Amyotrophic Lateral Sclerosis (ALS), the most common motor neuron (MN) disease in human adults. While FUS is a nucleocytoplasmic shuttling protein, it is mainly nuclear at steady state. Most ALS-associated FUS mutations disrupt the nuclear localization signal (NLS), leading to nuclear exclusion and cytoplasmic FUS aggregates in neurons and glial cells of these ALS patients. FUS is also a major protein component in pathologic cytoplasmic inclusions in some cases of Frontotemporal Lobar Degeneration (FTLD-FUS). However, unlike for FUS-linked ALS, the molecular cause for cytoplasmic mislocalisation in FUS-linked FTLD is unknown and no vertebrate model for FTLD-FUS is available. Therefore, the potential pathomechanisms in FUS-linked FTLD will have to be inferred from the insights from FUS-linked ALS models and its physiological functions.
FUS functions in several processes required for proper gene expression, such as transcription, pre-mRNA splicing, and miRNA processing. However, its precise role in these processes and most of its targeted RNAs are, as of yet, unknown. The combination of this lack of knowledge with the lack of FTLD-FUS models has led me and my research group to the conviction that understanding the biological function(s) of normal FUS will be one of the keys to gain insight into the role of FUS-associated neurodegeneration. Furthermore, this will allow us to fully interpret our results from our parallel investigation on the pathomechanisms of FUS-linked ALS using in vitro and in vivo models of disease. The results of our research are expected to reveal the molecular mechanisms implicated FUS-associated ALS and FTLD and identify targets for the development of therapeutic approaches.
Organisations
- King's College London, United Kingdom (Collaboration, Lead Research Organisation)
- University College London, United Kingdom (Collaboration)
- University of Bern (Collaboration)
- Karolinska Institute, Sweden (Collaboration)
- Swiss Federal Institute of Technology (ETH), Zurich (Collaboration)
- University of Milano-Bicocca (Collaboration)
- University of Basel, Switzerland (Collaboration)
People |
ORCID iD |
Marc-David Ruepp (Principal Investigator) |
Publications

Bracher L
(2020)
Human vtRNA1-1 Levels Modulate Signaling Pathways and Regulate Apoptosis in Human Cancer Cells.
in Biomolecules

Casci I
(2019)
Muscleblind acts as a modifier of FUS toxicity by modulating stress granule dynamics and SMN localization.
in Nature communications



Humphrey J
(2020)
FUS ALS-causative mutations impair FUS autoregulation and splicing factor networks through intron retention.
in Nucleic acids research

Jutzi D
(2018)
The emerging role of minor intron splicing in neurological disorders.
in Cell stress


Loffreda A
(2020)
miR-129-5p: A key factor and therapeutic target in amyotrophic lateral sclerosis.
in Progress in neurobiology

Loughlin FE
(2019)
The Solution Structure of FUS Bound to RNA Reveals a Bipartite Mode of RNA Recognition with Both Sequence and Shape Specificity.
in Molecular cell

Mechtersheimer J
(2018)
Generation of Gene Knockout and Gene Replacement with Complete Removal of Full-length Endogenous Transcript Using CRISPR-Trap
in BIO-PROTOCOL
Title | UK DRI Opening event artwork |
Description | The artist painted our stem cell derived motor neurons which were exposed at the UK DRI opening event. |
Type Of Art | Artwork |
Year Produced | 2019 |
Impact | Making science visible for the public and visualizing our generated output. |
Description | Academic Mentor for PhD students within the Department |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | Mentoring PhD Students Holding Scientifc Integrity Workshop Organizing Scientific Integrity Lectures 1:1 Meetings with Students |
Description | Dissecting the pathobiology of MND using FUS Delta14 mouse model |
Amount | £100,000 (GBP) |
Funding ID | 867-791 Note: PI: Anny Devoy; Co-I: Marc-David Ruepp (KCL-UK DRI), Helene Plun-Favreu (UCL) |
Organisation | Motor Neurone Disease Association (MND) |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2019 |
End | 06/2020 |
Description | Identification of converging minor intron splicing defects in ALS and elucidation of their therapeutic ptoential |
Amount | £233,386 (GBP) |
Funding ID | Ruepp/Apr19/872-791 |
Organisation | Motor Neurone Disease Association (MND) |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2020 |
End | 12/2022 |
Title | CRISPR-trap |
Description | CRISPR-trap allows the efficient generation of clean knockouts in cells by combining CRISPR/Cas9 with gene traps. |
Type Of Material | Cell line |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | Better model generation Requestes of generated cell lines and plasmids by laboratories in the UK, Canada, Germany |
URL | https://bio-protocol.org/e3052 |
Description | Collaboration with Adrian Isaacs and Sarah Mizielinska on C9orf72 ALS |
Organisation | King's College London |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Generation of an in vitro stem cell model of C9orf72 ALS |
Collaborator Contribution | Help in exchange matrix design for genome editing and exchange of material This is a DRI cross-centre collaboration |
Impact | The collaboration just started, no outputs yet |
Start Year | 2019 |
Description | Collaboration with Adrian Isaacs and Sarah Mizielinska on C9orf72 ALS |
Organisation | University College London |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Generation of an in vitro stem cell model of C9orf72 ALS |
Collaborator Contribution | Help in exchange matrix design for genome editing and exchange of material This is a DRI cross-centre collaboration |
Impact | The collaboration just started, no outputs yet |
Start Year | 2019 |
Description | Collaboration with Mihaela Zavolan (Uni Bas) and Eva Hedlund (Karolinska) on the physiological functions of FUS and ALS-FUS pathomechansims |
Organisation | Karolinska Institute |
Country | Sweden |
Sector | Academic/University |
PI Contribution | Generation of isogenic MNs via genome editing Transcriptomic profiling of in vitro ALS-MNs and mechanistic research on the physiological function of FUS |
Collaborator Contribution | Michael Zavolan: Computational analysis of data Eva Hedlund: Single Cell Sequencing of iPSC-derived MNs The collaborators are outside of the UK DRI |
Impact | Manuscript in preparation |
Start Year | 2017 |
Description | Collaboration with Mihaela Zavolan (Uni Bas) and Eva Hedlund (Karolinska) on the physiological functions of FUS and ALS-FUS pathomechansims |
Organisation | University of Basel |
Department | Biozentrum Basel |
Country | Switzerland |
Sector | Academic/University |
PI Contribution | Generation of isogenic MNs via genome editing Transcriptomic profiling of in vitro ALS-MNs and mechanistic research on the physiological function of FUS |
Collaborator Contribution | Michael Zavolan: Computational analysis of data Eva Hedlund: Single Cell Sequencing of iPSC-derived MNs The collaborators are outside of the UK DRI |
Impact | Manuscript in preparation |
Start Year | 2017 |
Description | Collaboration with Pietro Fratta on the auto regulation of FUS |
Organisation | University College London |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Studying the auto regulation of FUS in cancer cell lines |
Collaborator Contribution | Studying the auto regulation of FUS in an in vivo oder of FUS ALS The Collaboration is outside the UK DRI |
Impact | Joint pre-print bioRxiv 567735; doi: https://doi.org/10.1101/567735 |
Start Year | 2018 |
Description | Collaboration with Prof Chris Shaw |
Organisation | King's College London |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | In vitro models of ALS FUS and provision of material and molecular biology experience |
Collaborator Contribution | Generation of novel iPSC models, exchange of material and data UK DRI internal collaboration |
Impact | No outputs yet |
Start Year | 2018 |
Description | Collaboration with Prof Frédéric Allain on the physiological functions of Fused in Sarcoma |
Organisation | ETH Zurich |
Country | Switzerland |
Sector | Academic/University |
PI Contribution | Currently working together on two further manuscripts of the Function of FUS. We provide in vivo and molecular biology data, while the Allain group focuses on structural characterization of FUS. |
Collaborator Contribution | Structural characterization of FUS bound to RNA The collaborator is outside of the UK DRI |
Impact | Joint publications. The Solution Structure of FUS Bound to RNA Reveals a Bipartite Mode of RNA Recognition with Both Sequence and Shape Specificity. Loughlin FE, Lukavsky PJ, Kazeeva T, Reber S, Hock EM, Colombo M, Von Schroetter C, Pauli P, Cléry A, Mühlemann O, Polymenidou M, Ruepp MD, Allain FH. Mol Cell. 2019 Feb 7;73(3):490-504.e6. doi: 10.1016/j.molcel.2018.11.012. Epub 2018 Dec 20. Three further manuscripts in preparation. |
Start Year | 2013 |
Description | Collaboration with Prof Silvia Barabino and Prof Oliver Mühlemann on FUS' function in DNA damage and the impact of phase separation on this process |
Organisation | University of Bern |
Country | Switzerland |
Sector | Academic/University |
PI Contribution | Studying the physiological functions of FUS and defective mechanisms in ALS, Characterizing the interactomes of non-LLPS and LLPS FUS |
Collaborator Contribution | Studying the physiological functions of FUS and defective mechanisms in ALS related to DNA Damage The collaborator is outside of the UK DRI |
Impact | Two pre-prints that currently submitted/in peer-review bioRxiv 806158; doi: https://doi.org/10.1101/806158 bioRxiv 798884; doi: https://doi.org/10.1101/798884 |
Start Year | 2013 |
Description | Collaboration with Prof Silvia Barabino and Prof Oliver Mühlemann on FUS' function in DNA damage and the impact of phase separation on this process |
Organisation | University of Milano-Bicocca |
Country | Italy |
Sector | Academic/University |
PI Contribution | Studying the physiological functions of FUS and defective mechanisms in ALS, Characterizing the interactomes of non-LLPS and LLPS FUS |
Collaborator Contribution | Studying the physiological functions of FUS and defective mechanisms in ALS related to DNA Damage The collaborator is outside of the UK DRI |
Impact | Two pre-prints that currently submitted/in peer-review bioRxiv 806158; doi: https://doi.org/10.1101/806158 bioRxiv 798884; doi: https://doi.org/10.1101/798884 |
Start Year | 2013 |
Description | Collaboration with Prof. Oliver Mühlemann, University of Bern |
Organisation | University of Bern |
Country | Switzerland |
Sector | Academic/University |
PI Contribution | Generation of a Progranulin iPSC model. We aided in the design of the genome editing strategy |
Collaborator Contribution | A PhD student of the Mühlemann Lab visited the lab and performed genome editing and learned neuronal differentiations. |
Impact | The collaboration is ongoing, no outcomes yet. |
Start Year | 2019 |
Description | Invited Speaker at MRC Harrell 25.06.2019 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Postgraduate students |
Results and Impact | Presentation of our work on FUS-ALS and the impact of altered RNA metabolism in Neurodegeneration. The presentation has resulted in knowledge exchange and informal collaborations |
Year(s) Of Engagement Activity | 2019 |
Description | Invited Speaker at the Centre for Genetic Engineering and Biotechnology |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Undergraduate students |
Results and Impact | Presentation and discussion of our recent data on altered RNA metabolism in ALS-FUS |
Year(s) Of Engagement Activity | 2019 |
Description | Invited speaker at the UK-Isreal UK Dementia Prevention Conference in Tel-Aviv 17-19.06 2019 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Presentation of our work on altered RNA metabolism in Neurodegeneration |
Year(s) Of Engagement Activity | 2019 |
Description | Session Chair at the Austrian/Swiss RNA Meeting Fuschelsee |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | I chaired one session of this meeting that combined RNA research groups from Austria and researchers from Switzerland being members of the National Centre of Competence in Research NCCR RNA and Disease |
Year(s) Of Engagement Activity | 2019 |
Description | UK DRI at King's Opening Symposium |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | This symposium marked the official opening of the UK Dementia Research Institute King's College London centre. From 18-19 February 2019, researchers showcased new insights into neurodegenerative disease mechanisms including international expert keynote lectures. Many people commented and tweeted that this was a great event, stimulating many discussions about dementia research and engagement and interest from students/researchers/industry for new collaborations. |
Year(s) Of Engagement Activity | 2019 |
URL | https://ukdri.ac.uk/news-and-events/kingslaunch |