Chaperone-assisted protein folding in the bacterial periplasm
Lead Research Organisation:
University of Leeds
Department Name: Astbury Centre
Abstract
Molecular chaperones assist the folding of virtually all cellular proteins. Despite years of intensive study, the fundamental question of how chaperones facilitate protein folding remains unclear. Whilst molecular chaperones in the cytosol use the energy of ATP hydrolysis to control substrate binding, folding and release, how chaperones in the bacterial periplasm assist folding in the absence of ATP is unknown. Recent experiments have identified the substrates of the periplasmic chaperones Spy, Skp and SurA. Some of these chaperones assist folding of both water-soluble and membrane proteins, raising fascinating questions about how a chaperone is able to recognize its substrates, to release them in a controlled fashion and to assist folding. In this project the student will use biochemical and biophysical methods to determine how periplasmic molecular chaperones recognize their substrates, assist folding and, in tandem with each other and the Bam complex, create the folding pipeline required for bacterial growth and survival.
Publications

Fessl T
(2018)
Dynamic action of the Sec machinery during initiation, protein translocation and termination.
in eLife

Horne J
(2018)
Rapid Mapping of Protein Interactions Using Tag-Transfer Photocrosslinkers
in Angewandte Chemie

Horne JE
(2016)
A growing toolbox of techniques for studying ß-barrel outer membrane protein folding and biogenesis.
in Biochemical Society transactions

Horne JE
(2018)
Rapid Mapping of Protein Interactions Using Tag-Transfer Photocrosslinkers.
in Angewandte Chemie (International ed. in English)

Karamanos TK
(2019)
Structural mapping of oligomeric intermediates in an amyloid assembly pathway.
in eLife
Studentship Projects
Project Reference | Relationship | Related To | Start | End | Student Name |
---|---|---|---|---|---|
BB/M011151/1 | 30/09/2015 | 29/09/2023 | |||
1646705 | Studentship | BB/M011151/1 | 30/09/2015 | 29/09/2019 |
Description | Developed a new method for analysing the interactions between two proteins at high temporal and spatial resolution using cross-linking mass spectrometry. Discovered the mechanism by which chaperones in bacteria prevent the aggregation of their outer membrane protein substrates. |
Exploitation Route | The new methodology that has been developed will be useful for researchers across the globe studying protein-protein interactions, the methodology has been published and the chemical reagents that were designed are now commercially available. |
Sectors | Chemicals,Pharmaceuticals and Medical Biotechnology |
Title | Creation of Tag-Transfer crosslinkers |
Description | Developed new chemical crosslinking reagents for high resolution mapping of protein-protein interfaces in dynamic and static complexes. Developed method for using and analysing data generated by this method. |
Type Of Material | Technology assay or reagent |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | Used in my research on outer membrane protein biogenesis. Used by other researchers studying mechanisms of amyloid formation / protein misfolding (Prof. Sheena Radford, University of Leeds). Used in the study of protein-protein interactions (Prof. Andy Wilson, University of Leeds). Reagents are commercially available for use by researchers across the globe from Redbrick Molecular Ltd. |
URL | https://www.redbrickmolecular.com/product-category/imaging-and-labelling/ |
Description | Central Laser Facility cryoSTORM of Outer Membrane Proteins |
Organisation | Rutherford Appleton Laboratory |
Department | Central Laser Facility |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Provided samples, intellectual input and an impactful research question to be applied to a newly developed / in development technique by the group of Prof Marisa Martin-Fernandez at the Central Laser Facility |
Collaborator Contribution | Provided access to resources and training in a newly developed technique, cryogenic STORM, for imaging bacterial outer membrane proteins at a nanometre scale. Allows us to visualise membrane organization with a better localisation precision than standard room temperature super-resolution microscopy techniques and allows fixation of samples in a frozen-hydrated (more physiological) state than chemical fixants. |
Impact | Poster presented at the 'Imagine: Imaging Life 2018' symposium at the University of Sheffield. |
Start Year | 2018 |