Investigating mitochondrial complex I assembly as a factor for disease.

Lead Research Organisation: University of Exeter
Department Name: Biosciences

Abstract

Mitochondria are prominent in the public domain, with breaking news stories often reporting on newly discovered links between mitochondrial function and their primary role- harnessing the energy stored in food to provide the power for cell survival in the form of ATP. There is increasing evidence that relates mitochondrial dysfunction with ageing and neurodegenerative disorders, such as Parkinson's disease. The respirasome is a massive molecular machine that carries out cellular respiration in the mitochondrial inner membrane. It is comprised of four complexes (I-IV), which transfer electrons from NADH and succinate to molecular oxygen. Energy gained through this process is used to pump protons across the inner mitochondrial membrane, leading to a membrane potential that is used to generate ATP. Approximately 50% of all mitochondrial disorders affecting energy metabolism can be traced back to mutations in one of the subunits of complex I.
In exciting new data, we have discovered that an accessory protein of complex I plays a key role in the stability of the respirasome. Knock-down of this protein shows additional deleterious effects on respiration, production of reactive oxygen species (ROS) and reduction of the inner membrane potential. By cutting-edge imagining techniques, we have also observed that mitochondrial morphology is perturbed, which likely has additional consequences on network formation and the structure of protein complexes in the inner membrane.
In this multi-disciplinary project, state of-the-art imaging methods including fluorescence light microscopy and high-resolution electron cryomicroscopy (cryoEM), will be used to investigate the break-down of mitochondrial networks and the consequence on protein structures in our complex I mutants. This will be combined with biochemical experiments to explore the structural and functional integrity of the electron transfer apparatus. These will include analysis of the assembled state of the respiratory super-complexes alongside their electron transfer, proton-pumping and oxygen uptake activities. Their ability to restrict excessive (and damaging) production of ROS will also be evaluated. Knowledge gained will be used to shed light on, and guide the further study of, diseases associated with complex I dysfunction.

Publications

10 25 50
 
Description We discovered a novel ATP Synthase dimer architecture in the nematode C. elegans, in which the angle between the dimer heads is unusually large relative to that observed in yeast and mammalian systems.
We identified a relationship between ATP Synthase architecture and crista membrane morphology, when comparing these features in different species.
We used AlphaFold homology modelling to investigate structural changes associated with the novel architecture identified.
We speculate that a range of dimer angles may have evolved to alter crista diameter and thus suit bespoke energetic needs.
Exploitation Route We propose that a range of dimer angles may have evolved to alter crista diameter and thus suit bespoke energetic needs. Having identified C. elegans as an ideal model system for investigating of the role of dimer angle in mitochondrial physiology, health & disease (owing to unique divergence in ATP Synthase architecture), others can ow use this system to aid further investigation of dimer subunit composition, angle and corresponding crista morphology in a range of species inhabiting different environments.
Sectors Pharmaceuticals and Medical Biotechnology

URL https://www.biorxiv.org/content/10.1101/2023.02.02.526626v2
 
Title EMDB deposition: Sub-tomogram average of the C. elegans ATP Synthase dimer (EMD-16216) 
Description We deposited our sub-tomogram average of the C. elegans ATP Synthase dimer onto EMDB (accession code: EMD-16216). This is a low resolution structure of the dimer generated from electron cryo-tomography data. This sub-tomogram average has been published in a pre-print (https://www.biorxiv.org/content/10.1101/2023.02.02.526626v2), and the manuscript sent to a journal for review. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact N/A - this will only be released to the public upon publication of our manuscript on the ATP Synthase dimer in C. elegans. 
URL https://www.ebi.ac.uk/emdb/EMD-16216
 
Title EMPIAR deposition: Cryo electron tomography of whole mitochondria and released crista membranes isolated from Caenorhabditis elegans 
Description We have deposited raw tilt series of tomograms on to EMPIAR. These tomograms were used to generate a sub-tomogram average of the C. elegans ATP Synthase dimer, and to generate segmentations of C. elegans mitochondria, for publication in a pre-print (https://www.biorxiv.org/content/10.1101/2023.02.02.526626v2) which has been submitted to a journal. The data will not be available to the public until this paper is published. EMPIAR ID: 47484695 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact N/A - this will only be released to the public upon publication of our manuscript on the ATP Synthase dimer in C. elegans. 
 
Description Collaboration with Andrea Brancaccio 
Organisation University of Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution Segmented tomograms of mitochondria from C. elegans and yeast to allow comparison of crista membrane morphology. Generated a sub-tomogram average (low resolution structure) of the C. elegans ATP Synthase dimer for comparison with already published structures including that of the yeast dimer. Generated homology model of the C. elegans ATP Synthase dimer.
Collaborator Contribution Andrea carried out bioinformatics analysis, completing sequence and structural comparisons between ATP Synthase from C. elegans and a range of other organisms.
Impact Publication of pre-print on the C. elegans ATP Synthase dimer and submission of this manuscript to a journal: Cryo-electron tomography of C. elegans mitochondria reveals how the ATP synthase dimer interface shapes crista membranes. doi.org/10.1101/2023.02.02.526626
Start Year 2022
 
Description EMBO workshop: in situ structural biology (poster presentation) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Big names in the field of electron cryo-tomography presented at the workshop, and there was opportunity to ask questions and network after talks. There was also an online poster session for attendees (postgraduate students) to share their work.
Year(s) Of Engagement Activity 2020
 
Description South West Structural Biology Consortium (SWSBC) (Poster and flash presentation) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Other audiences
Results and Impact SWSBC is a regional conference, bringing together structural biologists to share their research from around the South West. I presented a poster and a short flash presentation at this conference to share my research.
Year(s) Of Engagement Activity 2020