The role of the endoplasmic reticulum in regulating T cell function

Lead Research Organisation: UNIVERSITY OF CAMBRIDGE
Department Name: Medicine

Abstract

BACKGROUND
Cellular metabolism critically defines T cell function1-5. How cellular metabolism is orchestrated at the ultrastructural level in immune cells remains largely unknown. Recently, we identified contact sites between the endoplasmic reticulum (ER) and mitochondria as critical subcellular hubs integrating metabolic and signaling requirements in memory CD8+ T cells, specifically underpinning their rapid recall capacity4. This finding established the ER as a critical ultrastructural component selectively enabling a pivotal memory CD8+ T cell feature. Building on this observation, the goal of this PhD Studentship is to assess how basic ER biology links with key aspects of the human CD8+ T cell function.

HYPOTHESIS AND GENERAL AIM
It is our hypothesis that ER-functionality is a critical determinant of T cell immune reactivity, shaping subset specific features. Building on the published work of others, the insight gained from our studies outlined above, and guided by further preliminary data described below - our GENERAL AIM is to establish a structural and molecular map of the ER in human CD8+ T cells and gain mechanistic insight into CD8+ T cell functionalities orchestrated in an ER-dependent manner.

SPECIFIC AIMS
Aim A. Examine ER phenotypes in human naïve and effector memory CD8+ T cells under quiescent conditions and following activation.
Aim B. Interrogate the role of UPR-dependent ER remodeling in activation and effector maturation of CD8+ T cell subpopulations.

Publications

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Studentship Projects

Project Reference Relationship Related To Start End Student Name
BB/V509504/1 30/09/2020 29/09/2024
2439998 Studentship BB/V509504/1 30/09/2020 29/09/2024 Katharina Patommel
 
Description Youth Travel Fund
Amount € 750 (EUR)
Funding ID Y/21/001 
Organisation Federation of European Biochemical Societies (FEBS) 
Sector Charity/Non Profit
Country United Kingdom
Start 04/2022 
End 06/2022
 
Description Characterising the role of Aster proteins in shaping CD8+ T cell functionality using cholesterol transport inhibitors. 
Organisation Technical University of Denmark
Department Department of Chemistry
Country Denmark 
Sector Academic/University 
PI Contribution Using the supplied inhibitors to test how inhibition of different intracellular cholesterol transporters effects CD8+ T cell functionality (activation, cytokine production and proliferation).
Collaborator Contribution Providing novel, unpublished inhibitors of intracellular cholesterol transport proteins.
Impact Multidisciplinary: Dr. Laraia's lab is a Chemistry laboratory specialising in the development and characterisation of novel cholesterol transport inhibitors, whereas our lab specialises in immune-metabolism related research.
Start Year 2023
 
Description Measuring the abundance of proteins involved in intracellular cholesterol transport and biosynthesis via protein mass spectrometry. 
Organisation University of Cambridge
Department Department of Medicine
Country United Kingdom 
Sector Academic/University 
PI Contribution Generation of cell pellets from Jurkat KO cell lines and primary T cells. Peptides used for assay development and as internal standards.
Collaborator Contribution Assay development.
Impact No outcomes yet - still in the development phase
Start Year 2023
 
Description Structural and biochemical characterisation of Aster C PID variants 
Organisation Medical Research Council (MRC)
Department MRC Laboratory of Molecular Biology (LMB)
Country United Kingdom 
Sector Academic/University 
PI Contribution I worked alongside a post-doc (Sisi Gao) in Prof. Modis' lab. We expressed and purified WT and mutant Aster C protein and subsequently characterised their respective stability as well as cholesterol binding/transfer capacities.
Collaborator Contribution Molecular Dynamics modelling of WT and mutant human Aster C protein. Providing hands-on help (by Sisi Gao, a post-doc), guidance, lab space and reagents for the work described above.
Impact Multi-Disciplinary: Structural Biology and Bioinformatics (Modis Lab) and Immuno-metabolism (Hess (our) lab).
Start Year 2021
 
Description iCASE studentship (partnered with GSK) 
Organisation GlaxoSmithKline (GSK)
Country Global 
Sector Private 
PI Contribution Hosting and supervising the PhD student (myself) who was selected to carry out the work for which this grant was awarded.
Collaborator Contribution Contributing to the PhD student's stipend and towards some research costs/ travel for conferences. Supervision. Hosting the PhD student for 3 months (this has not happened yet).
Impact Successful development of a CRISPR Cas9 KO approach for our genes of interest through advice from the industrial partner (Lee Booty, GSK).
Start Year 2020