Development of the next generation of sicm for live cell imaging

Lead Research Organisation: University of Cambridge
Department Name: Chemistry

Abstract

The cell surface is a complex arrangement of many molecules and this arrangement changes in time for the cell to perform specific functions and in response to stimuli. At present we can only resolve the molecular structure on frozen cells, so dynamics cannot be followed or we can follow just one component on the surface of live cells by the use of labelling. One method that has been developed to probe live cells at sufficient resolution to determine proteins on the surface is based on a scanned nanopipette. This controlled just above the soft cell surface so that it never touches and can be rastered over the surface to determine the topography. We aim to build on this method so that it can image more complex cell surfaces faster and can also locally apply reagents to identfy the features that we detect. This will be done with sufficient resolution to detect indvidual protein complexes on the cell surface, their organization and how this changes with time. This will allow many new details of how the cell works at the nanoscale to be observed for the first time and opening up many new types of experiments

Technical Summary

Our previous published work shows that scanning ion conductance microscopy, using a nanopipette, can be used for non-contact imaging of live cells under physiological buffer and to follow changes in time. Our recent work has shown that SICM can now be performed at sufficient resolution on specialized live cells to image individual protein complexes in the plasma membrane and to follow their reorganization in time. We have also shown that it is possible to pull fine double barrel pipettes and use these for controlled delivery on surfaces. We aim to build on these advances to develop the next generation of SICM using recent advances in digital signal processing, using Field Gated Programmable arrays, which allow fast parallel signal processing and the implementation of complex control algorithms.. We will improve the distance control algorithm and speed of imaging and develop control software that allows us to deliver reagents to the cell surface from defined distances with the dosage controlled by voltage pulses. This will allow us to image live cells of increased complexity at high resolution, follow real-time dynamics on the cell surface and use antibody binding to identify specific high resolution topographic features on the cell surface. This new generation of SICM will open up a wide range of new biological and biomedical studies of the cell membrane

Publications

10 25 50
 
Description Scanning ion conductance microscopy (SICM) is a form of scanning probe microscopy based on a nanopipette that uses the reduction in ion current as the pipette approaches a surface for distance feedback control . SICM has largely been developed for non-contact live cell imaging where the surface of a cell is scanned and the cell surface detected by moving the pipette towards the surface until there is a detectable reduction in the ion current. However imaging cells poses specific imaging problems since the surface can have large abrupt changes in height and can also change with time due to cellular dynamics, since cells are liv . It is therefore important to develop new methods for distance feedback control that allow faster scanning as well as high resolution to follow topographic changes on the cell surface during important biological processes. We have developed a new method of controlling the pipette for scanning ion conductance microscopy to obtain high-resolution images faster. The method keeps the pipette close to the surface during a single line scan but does not follow the exact surface topography, which is calculated afterwards from the measured ion current. By not properly following the cell topography but only doing this approximately and then recalculating the true topography afterward we found that we could image living cells much faster which was the main aim of the project.

We programmed a computer board ( FPGA) to be able to implement this method and tested it on a series of model samples and then on liv cells . We showed that this new method will be particularly useful to follow changes occurring on relatively flat regions of the cell surface at high spatial and temporal resolutions. Our new fast SCIM provided a large increase in the imaging rate and number of points imaged for surfaces containing a lot of small details, with a size comparable or smaller than the scanning pipette size and should allow faster imaging of biological surfaces before they undergo dynamic changes in structure. This is particularly advantageous for small scans since for large scans drifts in the ion current during a single line are more significant. It therefore nicely complements the current hopping mode, which is most advantageous for surfaces with high topography and can be used for large survey scans of samples. Since both modes use the same hardware they can be combined and fast SCIM can then be used for small rapid scans of relatively flat regions to obtain images at higher resolution and follow surface dynamics.
Exploitation Route This method of scanning can be programmed into any SICM allowing the user to scan in this new mode. This will be particularly advantageous for a certain type of biological sample where wants to detect changes in a small region.
Sectors Healthcare

 
Description Responsive mode grant from EPSRC
Amount £367,227 (GBP)
Funding ID EP/L027631/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 01/2015 
End 12/2018
 
Title Hopping mode 
Description A new way to scan cells using a nanopipette to deal with large changes in topography 
Type Of Material Technology assay or reagent 
Year Produced 2008 
Provided To Others? Yes  
Impact Capability to scan tissue 
 
Title SCANNING PROBE MICROSCOPY 
Description A method for interrogating a surface using scanning ion conductance microscopy (SICM), comprising the steps of: a) repeatedly bringing a SICM probe into proximity with the surface at discrete, spaced locations in a region of the surface and measuring surface height at each location; b) estimating surface roughness or other characteristic for the region based upon the surface height measurements; and c) repeatedly bringing the probe into proximity with the surface at discrete, spaced locations in the region, the number and location of which is based upon the estimated surface roughness or other characteristic in the region, and obtaining an image of the region with a resolution adapted to the surface roughness or other characteristic. 
IP Reference WO2009095720 
Protection Patent application published
Year Protection Granted 2009
Licensed Yes
Impact This method is now the main method that scanning ion conductance microscopy is performed and allows the scanning of tissue and brain slices as well as cells.
 
Description Talk at BA festival of Science 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Gave 50 minute talk at BA festival of Science at Surrey

Audience showed a great deal of interest after talk
Year(s) Of Engagement Activity 2009