Major Enhancements to the X-Ray Crystallographic Data Collection Equipment in the Krebs Institute

Lead Research Organisation: University of Sheffield
Department Name: Molecular Biology and Biotechnology

Abstract

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Technical Summary

An extensive programme of macromolecular structure analysis is underway in the Krebs Institute, Sheffield University Institute. Our programmes of work include: (1) Structural proteomics. Major BBSRC-funded projects that are providing numerous targets for crystallisation include a targeted structural genomics project for the determination of structures of identified essential gene products in Gram positive organisms (B. subtilis, S. aureus), and a ground-breaking programme on yeast protein complexes. (2) A wide-ranging portfolio of projects on nucleic acid binding proteins, including proteins involved in recombination, replication, transcription and translation. (3) Investigation of protein stability in extreme environments, including enzymes from hyperthermophiles, psychrophiles and halophiles. (4) Enzymology, including the molecular basis of substrate specificity and design of novel enzymes. (5) combating drug resistance in bacteria and parasites. (6) Aspects of pathogenicity, including toxin structures. All these projects, aided by our REI-funded protein production and crystallisation facilities, are producing a rapid flow of protein crystals for structural analysis. However our work is limited by the deficiencies in our current ageing data collection equipment. Our existing pair of Mar345 detectors remain highly effective, and are matched by a state-of-the-art microfocus x-ray generator optics combination. However, the detectors are mounted on old goniostats that lack versatility, are controlled by ageing computers, and crystals are cooled by increasingly unreliable and obsolete cryogenic systems. Major advantages of the new configuration include: (1) The ability to optimise data collection for challenging crystal problems by using the MarResearch Desktop Beamline to visualise very small crystals, to minimise crystal icing during long data collections, to collect high resolution data from crystals with long unit cells and to minimise x-ray background. (2) Efficient crystal cryo-cooling during data collection by replacement of our 7 year old, outmoded and increasingly unreliable, Oxford Cryosystems Cryostream 600 crystal coolers with state of the art 700 series crystal cryo-coolers, and essential part of any protein data collection facility. (3) Faster data processing, and hence more efficient screening of crystals, using a fast, modern, linux based PC data processing farm. The enhancements will provide an efficient data collection facility to allow the rapid prosecution of a range of structural projects that probe key problems in biology.

Publications

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Abd Aziz AG (2012) Cloning, purification, crystallization and preliminary X-ray analysis of the Burkholderia pseudomallei L1 ribosomal protein. in Acta crystallographica. Section F, Structural biology and crystallization communications

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Abd Aziz AG (2012) Crystallization and preliminary X-ray analysis of the receiver domain of a putative response regulator, BPSL0128, from Burkholderia pseudomallei. in Acta crystallographica. Section F, Structural biology and crystallization communications

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Baker PJ (2009) Active site dynamics in the zinc-dependent medium chain alcohol dehydrogenase superfamily. in Proceedings of the National Academy of Sciences of the United States of America

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Cruz-Migoni A (2011) Cloning, purification and crystallographic analysis of a hypothetical protein, BPSL1549, from Burkholderia pseudomallei. in Acta crystallographica. Section F, Structural biology and crystallization communications

 
Description The three dimensional structures of many proteins, enzymes and complexes of proteins with binding partners, proteins with DNA, enzyme with substrates and drug targets with inhibitors have been determined using the equipment funded in this award. These atomic structures have led to a greater understanding of molecular basis of the function of these molecules in diverse areas such as herbicide design, antimicrobial discovery, DNA metabolism, enzyme function and the infection and pathogenesis of some disease causing bacteria.
Exploitation Route The equipment funded has been used to determine the structures of proteins, and other materials, by many groups in Sheffield, and beyond, with these structures aiding the understanding of numerous different research themes.
Sectors Agriculture, Food and Drink,Electronics,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

 
Description As this award was for research infrastructure this question is poorly worded. However, numerous research groups in Sheffield and beyond have either provided samples for structure determination, or have used the equipment themselves. The use of this equipment has been fundamental in determining the structures of proteins, enzymes and complexes with inhibitors, DNA, substrates and binding partners, benefiting research in such areas as antimicrobial discovery, herbicide design, DNA metabolism, bacterial pathogenicity and photosynthesis. In addition structures of liquid crystals have been extensively studied, in the area of semiconductor design.
First Year Of Impact 2006
Sector Agriculture, Food and Drink,Education,Pharmaceuticals and Medical Biotechnology
Impact Types Societal,Economic