Characterization of novel components of the synaptonemal complex a meiosis-specific chromosome structure important for meiotic recombination

Lead Research Organisation: University of Sussex
Department Name: Sch of Life Sciences

Abstract

Sexually reproducing organisms, including humans, need to accurately pass genetic material to the next generation. The majority of cells in our bodies retain two copies of the complete set of the genetic blueprint of life (the genome), one inherited from our mother and another from our father. Our bodies develop from a single fertilized egg, which is the outcome of a fusion of a sperm and an egg. Unlike the majority of cells, sperm and eggs cells are specialized for passing genetic material onto the next generation, and contain only a single full set of the genetic blue print. A fertilized egg thus contains two copies of the genetic material upon starting a new life. A specialized mechanism is required to produce sperm and egg cells, and this mechanism must half the amount of the genetic material in each cell. This mechanism, known as meiosis, involves a number of very elaborate and sophisticated processes that reduce the amount of the genetic material to exactly half as much as that of parental cells. If something goes wrong during the process, it can lead to spontaneous abortion and various genetic disorders such as Down's syndrome. We use budding yeast as a model organism to study this process. Budding yeast is one of the simplest organisms to undergo sexual reproduction using the same basic mechanism as humans. It thus serves as a great resource to investigate the mechanisms operating in meiosis. We have recently identified new components of the budding yeast synaptonemal complex, a conserved machine playing a crucial role in halving the amount of genetic material. The focus of this work is to understand what roles these newly discovered components play in the context of this elaborate machinery.

Technical Summary

Meiosis plays a central role in the life cycle of sexually reproducing organisms. During meiosis, chromosomes are exactly halved and distributed into gametes (e.g., sperm and eggs) that are eventually used to form a new individual. Homologous recombination plays an essential role in the accurate segregation of homologous chromosomes at meiosis I. When homologous recombination is highly induced in prophase I, chromosomes undergo dynamic morphological changes and form a proteinaceous structure called the synaptonemal complex (SC) in which the homologous chromosomes are closely paired. The SC is important for various aspects of meiotic recombination, but the mechanism at the molecular level still remains elusive. In budding yeast, the Zip1 protein is a major component of the SC. Zip1 is involved in many of the key steps that ultimately lead to the accurate segregation of homologous chromosomes. These include homologous chromosome pairing and meiotic recombination. Through cytological screening, we have identified two novel meiosis-specific proteins which we have named Zil1 and Zil2 (Zip1-like Localization), that show a similar localization pattern to Zip1 on meiotic chromosomes. Zip1 localization was greatly disturbed by the absence of these proteins, indicating their important role in the function of SC. We also found that one of the proteins is subject to post-translational modification. In this proposal, we will first focus on identifying the defects caused by the loss of these newly identified proteins, by using the combination of genetics, molecular and cell biological approaches. Second, we will investigate how these defects are caused, with the emphasis on understanding how these new proteins are mechanistically related to Zip1 and other SC/recombination proteins.

Planned Impact

The primary beneficiary of the proposed research is the medical community. Regardless of organism, fundamental mechanisms such as those required for repairing damaged DNA and segregating chromosomes are essentially the same. This proposal centers around understanding the regulation of homologous recombination during meiosis and its involvement in chromosome segregation. We propose to use a tractable model organism (budding yeast). This proposal will thus provide a framework for understanding the molecular mechanism of chromosome segregation during meiosis in humans. Pharmaceutical community is a future potential beneficiary. It is known that the risk of natural abortion and specific genetic disorders (such as Down's syndrome) caused by inaccurate chromosome segregation are dramatically increased in woman with age. Understanding the mechanisms underlying meiotic chromosome segregation will lead to a better understanding the causative mechanisms of such disorders. A mechanistic understanding is key to the identification of molecules/proteins critical for the fidelity of the process. Potentially these can serve as molecular markers to evaluate the functionality of the mechanism. Prospective applications include the development of diagnostic/risk assessment tools for natural abortion and genetic disorders associated with aneuploidy. Furthermore, it is theoretically possible to identify compounds to improve the accuracy of meiotic chromosome segregation. Papers written based on the result of this proposal will be deposited in an on-line publically available repository established and maintained by the University of Sussex. Additional engagement with the public will be planned in association with the GDSC which operates a public engagement policy. In parallel, to further publicize the results obtained through this proposal, the PI and PDRA will prepare a website designed to explain the research conducted in our group to lay-audiences as well as specialists. To exploit our results in order to obtain insight into the mechanism in humans, we will actively seek collaborations with researchers specialized in mouse and human meiosis (including clinicians). We will do so by attending meetings (such as Gordon Conference) to interact with researchers studying human and mammalian models. In order to communicate the progression of the research programme and the outcomes to a broader industrial audience, the University of Sussex, currently has two LTN business fellows, as well as a programme known as Curious. Both schemes are designed to communicate academic research to the industrial sector. Curious was designed to communicate the research knowledge from within the University to the wider business sector and was developed in collaboration with South East England Development agency. The aim is to forge partnerships with external organisations, leading to knowledge exchange and collaborations. Our group will take advantage of these programmes to investigate the possibility of our knowledge/discovery being used to develop new biomedical tools.
 
Description We proposed to study a mechanism responsible for separating chromosomes during meiosis using budding yeast as a model. More specifically, we proposed to characterize two novel components of meiotic chromosomes (Zil1 and Zil2, respectively), which are critical for assembling a meiosis-specific chromosome structure called the synaptonemal complex (SC). The SC mediates tight association of paired homologous chromosomes during prophase I, and the association is physically mediated through the dedicated proteins called transverse filaments. Zil1 and Zil2 are now officially called Ecm11 and Gmc2 in publications, which I observe here. The proposed aims were as follows:

Aim1: Cell biological characterization of Ecm11 and Gmc2 using a chromosome spread technique
Aim2: Effect of the loss of Ecm11 and Gmc2 functions on meiotic recombination
Aim3: Analysis of Ecm11 and Gmc2 proteins

Objectives proposed in Aim1, 2 and Aim3(a) were fully addressed and were published in two papers (Voelkel-Meinman et al, PLOS Genetics (2013), Humphryes et al, PLOS Genetics (2013)).

The major results are as summarized below:
(1) Ecm11 and Gmc2 are major components of the SC
We identified Ecm11 and Gmc2 as major components of the SC, completely overlapping with transverse filaments. In the absence of transverse filaments, Ecm11 and Gmc2 are localised only to the sites where SC assembly starts. The absence of the proteins lead to poor assembly of transverse filaments, causing defective SC formation and a reduction in homologous recombination.

(2) SUMOylation of Ecm11 is essential for SC assembly
Ecm11 becomes highly SUMOylated during meiosis in a Gmc2-dependent manner. We identified two SUMOylation target sites, one of which turned out to be essential for the Ecm11 function. Ecm11 SUMOylation partially required transverse filaments and proteins important for transverse filament assembly.

(3) SUMOylation of Ecm11 is important for chromosomal assembly of transverse filament
The ecm11 mutant which is not SUMOylated showed a similar phenotype as the ecm11 null mutant where SC assembly is severely compromised. However, in the SUMOylation-negative mutant, unlike the null mutant, the polycomplex, an extrachromosomal body made of assembled transverse filaments, were frequently seen. These results suggest that SUMOylation of Ecm11 is essential for specifically facilitating chromosomal assembly of transverse filaments.

(4) Ecm11 regulates transverse filament assembly at the central element
By using superresolutaion microscopy, we showed that Ecm11 and SUMO are right at the centre of assembled transverse filaments, a substructure of the SC that is historically known as "the central element". Thus, we propose that Ecm11 and Gmc2 control assembly of transverse filaments through SUMOylation of Ecm11 at the central element.
Exploitation Route Based on the fact that our research was done using budding yeast, one of the simplest eukaryotic model organisms, it will be interesting to see if a similar mechanism is being used in higher eukaryotes such as humans. We started approaching groups of researchers who work with higher eukaryotic models. Whether SUMOylation is being used as a main regulator for SC assembly is an attractive possibility, which needs to be formally addressed in future.
Sectors Pharmaceuticals and Medical Biotechnology

 
Description Since our research uses budding yeast as a model organism, it will be interesting to see if similar mechanisms are being used in higher eukaryotes such as humans. Basic structures of the SC is well conserved between humans and yeast, it is likely that similar mechanisms are operating to control assembly of the SC through regulating the efficiency of transverse filament assembly at the central element. In the UK, the NHS estimates that one in six couples have difficulty conceiving. Interestingly, in ~25% of cases, there is no known cause for infertility. Some of these difficulties arise from defects/misregulation of meiotic recombination. My research can help identify critical factors/mechanisms responsible for particular genetic processes. Thus, we can contribute to further understanding the mechanisms underlying some germ line defects and genetic disorders caused by meiotic chromosome missegregation, such as Down's syndrome.
First Year Of Impact 2012
Sector Pharmaceuticals and Medical Biotechnology
Impact Types Societal

 
Description Cytological analysis of fine structures of the synaptonemal complex in budding yeast 
Organisation Wesleyan University
Country United States 
Sector Academic/University 
PI Contribution Yeast strains and sample preparation and analyses were done.
Collaborator Contribution Yeast strains and sample preparation and analyses were done.
Impact SUMO Localizes to the Central Element of Synaptonemal Complex and Is Required for the Full Synapsis of Meiotic Chromosomes in Budding Yeast PLOS Genetics (2013) e1003837
Start Year 2012
 
Description Brighton Science Festival, Brighton sparks day, 16 Feb 2016 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Using a board game created by us, participants learnt how certain life styles, such as smoking, sun bathing accelerate DNA mutagenesis, are related to occurrence and development of cancers.

We had many feedbacks regarding the presentation, stating it was stimulating, made them realize the links and risks about life styles and cancers.
Year(s) Of Engagement Activity 2014