An integrated experimental and theoretical approach to understanding corneal epithelial maintenance

Lead Research Organisation: University of Edinburgh
Department Name: Sch of Clinical Sciences

Abstract

Maintenance of the cornea, the transparent front surface of the eye that acts as our window on the world, is necessary for normal vision. There are many ways in which it can get permanently damaged, leading to opacity and potential loss of sight. In spite of intense study by many laboratories, major questions relating to the maintenance of the corneal surface remain. For example, although a large body of evidence exists which implies that stem cells have a major role, the actual location of these stem cells, and to what extent and under what circumstances they are active, remains highly controversial. Similarly, while it is known that cell migration occurs throughout life in the cornea, its importance and even its direction have been disputed. Because maintenance of the corneal surface is fundamental to our eyesight it is essential that we understand the basic biology about how the cornea functions normally and reacts, in the short and long term, to injury.

This project will address the significant issues about stem cell localisation and activity, cell production, migration and loss, within the corneal surface epithelium. We will build upon a computer model that we have already developed that potentially explains some of the patterns of cell migration and loss that we have previously observed. We will refine that model using new biological data, and then use it to make testable predictions about how the cornea is maintained normally, how it is affected by ageing and genetic defects and how it responds to injury. We have an array of 'reporter' mice which, because they express fluorescent or other chemical markers in subsets of their corneal epithelial cells, can be used to trace patterns of cell production and migration in the cornea throughout life, starting during gestation and continuing into the ageing adult. Using these mice, we will be able to model genetic abnormalities and corneal injuries that test the predictions of the computer model. The mice will be used to show where the stem cells are localised in the cornea - knowledge that is essential to our understanding of how the epithelium is maintained. They will show how normal patterns of cell production and migration in the corneal surface are changed by injury and genetic defects, and also reveal whether these changes are long or short term. Changes in stem cell activity and migration patterns with ageing will also be determined using these mice - it is known for example that ageing human corneas heal less quickly than those from younger people. The refined model will have lasting benefits, as we will be able to use it to predict how different types of abnormalities occur in different corneal diseases. It will also contribute to reducing future animal experiments.

Overall the project will generate key fundamental understanding of the processes that underlie corneal maintenance during normal life. We will be able to determine where the stem cells are, what they do and how replacement cells get to sites of injury. This knowledge will also help us understand why the corneal surface sometimes suffers degeneration and opacification that is difficult to treat. If new insights from our animal studies are applicable to humans this may also improve the management of corneal diseases or complications arising from operations such as laser eye surgery.

Technical Summary

This multidisciplinary systems project studies maintenance and regeneration of the ocular surface. We have developed an in silico model of corneal epithelial maintenance incorporating cell proliferation, loss and centripetal migration, which stably recapitulates observed patterns of clonal cellular arrangement in adult life. In this project we will refine the model by fitting to experimental data, obtain new empirical data on epithelial cell loss, and hence make predictions about the response of the corneal to damage or ageing.

The in silico model will be validated in vivo using mosaic reporter transgenic mice (LacZ and GFP mosaics) and mutant mice to track the long-term patterns of cell migration and orientation in normal, wounded and ageing situations. Corneas of mouse genetic mosaics have radial striped patterns (meeting at a central spiral), consistent with centrifugal movement of cells from the peripheral limbus (putative stem cell niche). Predictions about how ocular surface wounding or ageing causes disruption to epithelial migration patterns will be tested using these reporters. Genetic disruption will be effected by crossing the mosaic reporter mice onto Pax6 and Gli3 mutant backgrounds. The location of stem cells in the ocular surface will be determined using lineage tracing with tamoxifen-inducible CAGG-CreER;loxP-reporter mice (R26R-LacZ, R26R-YFP). By applying low doses of tamoxifen we will label individual cells and, through longitudinal studies, determine whether active stem cells, producing long-term clones during normal homeostasis (without wounding), are ever found in the central cornea rather than limbus.

The cornea is an excellent model of how stem cell activity, cell movement and loss are balanced in vivo. This project is important as there are major gaps in knowledge of the basic science of corneal maintenance that are essential to resolve, both as a model for epithelial homeostasis and in relevance to corneal degenerative problems.

Planned Impact

A. List of potential beneficiaries of this research
1. Academics.
2. Government Regulators - Home Office statistics on animal use
3. NHS and pharmaceutical industry
4. Eye charities
5. Patient support groups
6. General public

B. Ways in which potential beneficiaries will benefit from this research:
1. Academics.
As described in the academic beneficiaries section of the proposal this work will have a significant impact on academic scientists working on corneal biology. Benefits include the additional biological knowledge gained, including resolving the current dispute about the location of stem cells, and the production of a predictive model. Other theoretical scientists working in related fields will benefit from the new tools and techniques that are developed.

We expect this project to establish a core multidisciplinary group that can expand to investigate other problems. For added value, we plan to provide collaborators with samples to establish parallel research on other tissues.

2. Government Regulators - Home Office statistics on animal use
Generation of a mathematical model that enables predictions about how abnormal corneal phenotypes arise in genetic mutants will allow future experiments to be more focused and so contribute to making research more efficient and reducing the numbers of animal experiments.

3. NHS and pharmaceutical industry
In the long-term, an improved understanding of the biological basis of corneal maintenance could contribute to improvements in treatments for corneal disease using a more evidence-based approach to design clinical treatments. This would benefit the NHS and may prompt new uses of existing pharmaceuticals or even development of new products. However, the timescale for any such economic benefits is beyond the duration of this project.

4. Eye charities
A key part of the project is to refine a computer model of cornea maintenance using new biological data. We will either produce a web-based cartoon animation of what the model does or create a simplified ('toy') interactive educational computer model explaining how the cornea is maintained. This might be useful for eye charities to use on their websites to educate the public in general terms about the importance of the cornea to their eyesight, illustrate how it is maintained in a very dynamic way and explain what changes may occur with ageing.

5. Patient Support Groups
Our research would allow patient support groups to provide informed advice to those suffering from ocular surface problems. For example, a major source of uncertainty and worry for people with aniridia (resulting from PAX6 haploinsufficiency) is how to manage or decelerate corneal degeneration, and to understand how corneal surgery or chronic abrasion e.g. from contact lenses will affect them. Currently there is little basic research pertinent to these questions.

6. General public
The simplified interactive educational computer model (described in 4) could form the central component of scientific demonstrations to the public (e.g. at science festivals) to inform them about the role of stem cells in maintaining the cornea. Research on eyes, and conditions leading to blindness, is of interest to the general public and is routinely disseminated via the popular media.
 
Description The project entitled "An integrated experimental and theoretical approach to understanding corneal epithelial maintenance", involved the three linked grants, held by Prof J. Martin Collinson (JMC), School of Medical Sciences, University of Aberdeen, Dr Kevin Painter (KP), School of Mathematical and Computer Sciences, Heriot-Watt University and myself. Together, these three grants had two major aims, covering six specific objectives. Aim (A) was to develop a mathematical model to explain how observed patterns of cellular arrangement in the mouse corneal epithelium can be generated and to localise stem cells experimentally within the ocular surface in vivo. Aim (B) was to evaluate the hypothesis that the radial stripes and the central vortex patterns, displayed in the corneal epithelium of mosaic mice, are formed by centripetal cell migration and show how wounding, mutation and ageing affect the cornea. Results for work undertaken under grant BB/J015172/1, are reported here. Results for work undertaken under two other linked grants will be reported elsewhere, by the other grant holders (KP and JMC).

For objective (A1), we produced experimental data on mouse corneal epithelial cell numbers, cell proliferation and cell loss for use in the mathematical model. Experiments described in (A2), below, also provided an estimate of stem cell numbers. Details of analysis of division orientations and double-labelling experiments used to estimate cell cycle times and the details of the model will be reported elsewhere by JMC and KP, respectively.

For objective (A2), we used a transgenic lineage tracing approach to investigate where the stem cells that maintain the corneal epithelium during normal homeostasis are located. This is important because, although it is accepted that there are stem cells in the limbus at the periphery of the cornea, the details are hotly debated. The limbal epithelial stem cell (LESC) hypothesis maintains that these are the only stem cells involved in corneal epithelial maintenance and that they are involved both in maintaining this tissue during normal homeostasis and also in repairing corneal epithelial wounds. However, the corneal epithelial stem cell (CESC) hypothesis maintains that these LESCs are only involved in wound healing and that there are other stem cells (CESCs) located throughout the corneal epithelium that maintain the tissue during normal homeostasis.

The transgenic lineage tracing approach enabled us to switch on a genetic marker in a proportion of cells in the corneal and limbal epithelia by injecting the mice with tamoxifen. Most of our work was done with CAGG-CreER;R26R-LacZ reporter mice. The CAGG-CreER transgene expresses a fusion protein comprising Cre recombinase and a modified oestrogen receptor (CreER) in all cell types so it is not biased to expression in the limbus or cornea. Injection of these mice with tamoxifen, translocates CreER to the nucleus where it switches on expression of the LacZ reporter gene in a proportion of cells in all tissues. This gene encodes the enzyme ß-galactosidase and once activated in a cell it remains active in all its daughter cells. In most cases, we injected mice at 12 weeks of age and stained the eyes for ß-galactosidase activity after different chase periods to determine the location of cells that produced long-lived clones of labelled cells.

Initially all cell types in the ocular surface were labelled but short-lived clones in the corneal epithelium, which were derived from labelled transient amplifying cells, were shed during the chase period and long-lived clones, derived from stem cells, expanded. At 6 weeks, labelled clones appeared at the periphery, extended centripetally as radial stripes and a few reached the centre by 14 weeks. As all the long-lived radial-stripes arose at the periphery there was no evidence that there were any stem cells in the central cornea that contributed to normal corneal epithelial maintenance. Thus, we were able to determine that, during normal homeostasis (in the absence of wound-healing), the corneal epithelium is maintained by stem cells located in the limbus. Surprisingly, after longer chase times, stripes varied in length and only about 50% had one end at the limbus. This suggests that, if stem cells are located in the limbus as implied above, they cycle through periods of activity and quiescence so some clonal stripes are discontinuous. This study has now been published (Dorà, N. J. et al 2015 Stem Cell Res. 15, 665-677) and it has successfully resolved the controversy, about the location of the stem cells that maintain the corneal epithelium during normal homeostasis, in favour of the LESC hypothesis.

We extended the original study in two ways. We compared the effects of inducing labelled cells at 4, 12 and 24 weeks. The overall pattern was similar but stripe numbers decreased with age, suggesting the possibility of an age-related difference in the frequency of stem cell quiescence (objective B4). The grant was extended for three months so we could use the same eyes to photograph and analyse the distribution of clones in the conjunctiva. All the samples were photographed but the analysis was not completed before the grant ended. When I retired in 2016, samples and photographs were given to my collaborator, JMC to complete this work.

To further analyse possible effects of ageing (objective B4) we developed a computer simulation to compare the effects, on the stripe patterns, of stem cell loss (or permanent quiescence) versus stem cell replacement by stochastic neutral drift. The simulation results showed that the observed age-related decline in the corneal corrected stripe numbers could be explained by stochastic stem cell replacement and/or stem cell loss (or inactivation). This finding invites biological investigation of whether these stem cells sometimes divide symmetrically. This simulation study has now been published (West, J.D. et al 2018 Stem Cell Res. 30, 1-11).
Exploitation Route Now we know that, during normal homeostasis, the corneal epithelium is maintained exclusively by limbal epithelial stem cells, further work is required to explain the evidence that the corneal epithelium can sometimes be maintained when LESCs fail to contribute normally. (For example, TACs may be able to increase their proliferative potential.)

Further lineage tracing experiments are required to determine whether the differences in labelling frequencies at different ages reflect an age-related difference in the frequency of stem cell quiescence.

Further work might also be directed at understanding what causes active limbal epithelial stem cells to become quiescent and what causes quiescent LESCs to be activated. If quiescent stem cells can be activated without wounding the corneal epithelium this would have therapeutic potential.
Sectors Healthcare

 
Title Data from computer simulation of neutral drift among limbal epithelial stem cells of mosaic mice 
Description This is a computer simulation model with an associated collection of data. The previously observed age-related reduction of corneal stripes in mosaic mice was simulated. Simulation data used in the study and the source code for the simulation program have been deposited in Edinburgh DataShare, the University of Edinburgh's data repository (http://dx.doi.org/10.7488/ds/2345). An active version of the web app 'CloneSim', which is designed to run on the web browser Google Chrome, can be accessed online at http://grahamwest.github.io/clonesim/dist/index.html#!/view/1 and the source code can also be accessed at https://github.com/grahamwest/clonesim. The data is for the following published paper: West JD, Mort RL, Hill RE, Morley SD, Collinson JM, 2018. Computer simulation of neutral drift among limbal epithelial stem cells of mosaic mice. Stem Cell Research 30, 1-11. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact No known impact yet. 
URL http://dx.doi.org/10.7488/ds/2345
 
Title Raw data for lineage tracing in the adult mouse corneal epithelium 
Description Excel spreadsheets of the data have been deposited in the University of Edinburgh DataShare repository. The data is for the following published paper: Dorà, N. J., Hill, R. E., Collinson, J. M., West, J. D., 2015. Lineage tracing in the adult mouse corneal epithelium supports the limbal epithelial stem cell hypothesis with intermittent periods of stem cell quiescence. Stem Cell Research. 15, 665-677. 
Type Of Material Database/Collection of data 
Year Produced 2015 
Provided To Others? Yes  
Impact No known impact yet. 
URL http://dx.doi.org/10.7488/ds/1341
 
Description Dr Kevin Painter 
Organisation Heriot-Watt University
Department School of Mathematical and Computer Sciences
Country United Kingdom 
Sector Academic/University 
PI Contribution My BBSRC grant (BB/J015172/1, An integrated experimental and theoretical approach to understanding corneal epithelial maintenance) is linked to BBSRC grant BB/J015490/1 (held by Dr Kevin Painter, School of Mathematical and Computer Sciences, Heriot-Watt University). During the course of the grant I have provided Dr Painter with biological information required to produce the mathematical model that he is creating. This collaboration formally ceased when I retired in 2016 but Dr Painter continues to work on the mathematical model.
Collaborator Contribution Dr Painter is producing a mathematical model of corneal epithelial maintenance. During the course of the grant Dr Painter has held meetings with me to discuss the mathematical model.
Impact There have been no outcomes yet as work on the mathematical model is still in progress. The collaboration with Dr Painter is multi-disciplinary between a mathematician and a biologist.
Start Year 2013
 
Description Prof. J. Martin Collinson 
Organisation University of Aberdeen
Department School of Medical Sciences Aberdeen
Country United Kingdom 
Sector Academic/University 
PI Contribution My BBSRC grant (BB/J015172/1, An integrated experimental and theoretical approach to understanding corneal epithelial maintenance) is linked to BBSRC grant BB/J015237/1 (held by Prof J. Martin Collinson, School of Medical Sciences, University of Aberdeen). During the course of the grant we both worked on different aspects of mouse cornea biology. Dr Dora (my postdoctoral scientist) and I held a number of meetings with Prof Collinson and his team to update them about our research and for discussions and exchange of information. This collaboration formally ceased when I retired in 2016 but Prof Collinson continues to work on the mouse cornea.
Collaborator Contribution During the course of the grant Prof Collinson and his team have held meetings with Dr Dora (my postdoctoral scientist) and me, to update me about their research and for discussions and exchange of information.
Impact Prof Collinson and I have jointly authored several journal articles and a magazine article: Journal articles: West, J. D., Dorà, N. J., Collinson, J. M., 2015. Evaluating alternative stem cell hypotheses for adult corneal epithelial maintenance. World J Stem Cells. 7, 281-99. Dorà, N. J., Hill, R. E., Collinson, J. M., West, J. D., 2015. Lineage tracing in the adult mouse corneal epithelium supports the limbal epithelial stem cell hypothesis with intermittent periods of stem cell quiescence. Stem Cell Res. 15, 665-677. West, J. D., Dorà, N. J., Collinson, J. M., 2015. Evaluating alternative stem cell hypotheses for adult corneal epithelial maintenance. World J Stem Cells. 7, 281-99. Findlay, A. S., Panzica, D. A., Walczysko, P., Holt, A. B., Henderson, D. J., West, J. D., Rajnicek, A. and Collinson, J. M. (2016). The core planar cell polarity gene, Vangl2, directs adult corneal epithelial cell alignment and migration. Royal Society Open Science 3, 160658. West JD, Mort RL, Hill RE, Morley SD, Collinson JM, 2018. Computer simulation of neutral drift among limbal epithelial stem cells of mosaic mice. Stem Cell Research 30, 1-11. Magazine article: "Understanding Corneal Stem Cells Through Stripes" by John West and J. Martin Collinson. The Ophthalmologist, October 2014, issue 12, pages 16-23
Start Year 2013
 
Description Magazine article (The Ophthalmologist) 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact To reach a wider audience for our work and so increase its impact we wrote a magazine article describing some of our research. This was published in the October 2014 issue of The Ophthalmologist magazine (www.theophthalmologist.com):
"Understanding Corneal Stem Cells Through Stripes" by John West and J. Martin Collinson. The Ophthalmologist, October 2014, issue 12, pages 16-23 (https://theophthalmologist.com/fileadmin/top/pdf/TOP_Issue_0914.pdf).

This has only just been published so we do not know of any impacts.
Year(s) Of Engagement Activity 2014
URL https://theophthalmologist.com/fileadmin/top/pdf/TOP_Issue_0914.pdf