Unravelling the ecdysis cascade in crustaceans: Can we unify neuropeptide and receptor identities and functions in arthropods?

Lead Research Organisation: Aberystwyth University
Department Name: IBERS

Abstract

Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.

Technical Summary

The hormone cascades leading to execution of stepwise orchestrated behaviours culminating in ecdysis in insects have been the subject of intense and fruitful research in the past few years, not least for genetically tractable models. However, for crustaceans, much less is known. Our research programme will address this issue, uncovering both common and unique mechanisms involved in ecdysis in our crab model, Carcinus maenas. We will firstly discover the wide array of peptide hormone and GPCR receptor transcripts involved by using RNAseq technologies to produce neurotranscriptomes at several stages of the molt cycle. Thus we will discover and measure expression levels of many candidates in a global context. Functional identification of these, will build upon what is known for homologous systems in insects. To identify, and deorphanize receptor ligand pairs, we will use well-proven aequorin reporter assays in which cloned candidate GPCRs signal through a promiscuous Galpha subunit. Peptidergic neurones and networks that are organisers of the endocrine cascade will be identified, together with the receptors for the command peptides that initiate ecdysis using immunochemistry and in-situ hybridization. We will couple these results with precise measurement of peptide hormone cascades at a very fine temporal scale. These findings will lead to novel functional studies on selected neuropeptides and receptors, performed via systemic RNAi to determine disrupted phenotypes (transcript, hormone and behavioural/phenotype). Finally we will attempt to contrast conserved neuropeptide/receptor hierarchies involved in ecdysis in athropods with that of a regulatory system unique to crustacaceans, the molt-inhibiting hormone (MIH) and will answer a long-standing question in crustacean endocrinology by identifying and deorphanizing the cognate receptor for the first time, using a combination of NGS, bioinformatics and functional receptor screening in the aequorin assay.

Planned Impact

The research questions posed in this proposal are firstly of major interest to academic groupings in Biological Sciences. For invertebrate endocrinologists and neuroscientists, our state-of-the art approaches to answering fundamental questions related to arthropod physiology, neuroendocrinology and endocrine homeostasis, will have considerable impact. We are we making a bold attempt to unify arthropod endocrinology, which will be of broad interest to evolutionary biologists. By unravelling core mechanisms involved in ecdysis, we are trying to answer a big question that impacts on quite a number of issues that involve every aspect of arthropod physiology and development. Thus, we have every confidence that our studies will, in the near future, appear in biology textbooks. We will disseminate our findings by publishing primary papers and reviews in high impact journals, presenting our work at national and international meetings. We anticipate that the proposed work will lead to up to 6 high-quality, primary research papers.
Crustaceans, and insects are (in their own way) immensely charismatic animals. Crustacean ecdysis and insect eclosion are fascinating behaviours that capture the imagination of young and old alike. Our findings will be of general interest to the public, and we have planned a vigorous, far reaching and enthusiastic series of activities (Pathways to Impact) to ensure that we maximise public exposure to our research. Both DCW and SGW are passionate about public engagement, and have recently had extensive media coverage. To summarise; we will engage public interest by taking advantage of all available opportunities.
Relevance and impact to industry. The proposed work has direct impact upon crustacean aquaculture. There are two major issues for which our work will be relevant. Firstly, in the broadest sense, since we know relatively little regarding endocrine mechanisms involved in growth and reproduction in crustaceans, our findings will be important in future (technologically driven) aquaculture. More topically, and of immediate relevance, our research deals with endocrine cascades during ecdysis. At this time (preparation for, and execution of ecdysis), there are substantial losses in aquaculture. Soft-shell crab fisheries in the USA (Blue crab, Callinectes sapidus) suffer quite enormous losses from stress-related mortality in captive crabs prior to marketing. Apropos this, we should highlight welfare issues in transported crustaceans. It is not generally appreciated that almost all live crustaceans undergo extensive periods of transport, often between continents. These animals invariably become tremendously stressed, and experience severe hypoxic episodes, with high mortality. Since our research exactly involves the neurohormones involved in adaptation to stressful episodes, and use of technologies developed in the research programme (for example measurement of neurohormone levels in experiments designed to reduce transport stress) our findings will be relevant to animal welfare.
The research programme involves collaboration with scientists at FERA, (cell-based aequorin receptor assays). This group investigates rational design of potential peptide mimetic pesticides, hence their interest in receptor/ligand interactions on economically important insect pests. Since, the central driver of our research programme is to unify peptide signalling systems involved in arthropod ecdysis, there is a potential possibility that our respective research programmes will interact synergistically.
Training opportunities. The research programme proposed here offers superb training opportunities in data driven research (bioinformatics, NGS technologies), state of the art molecular techniques, that are in our experience, in short supply in the UK. Thus, the impact of this research is direct in that it has the immediate potential of increasing UK competitiveness in Biosciences research.
 
Description This grant was awarded as a joint application between Aberystwyth (Wilcockson) and Professor Simon Webster (Bangor, UK). Work-packages detailed in the original application were dedicated to each partner institute and I will briefly outline progress to date resulting from work conducted at Aberystwyth and describe outcomes that we are in the process of publishing or that are already published.
WP1. Identification and quantification of peptide receptor expression during defined stages of the moult cycle by NGS and in silico prediction. Our working hypothesis for the grant was that insects and crustaceans should share commonalties in the endocrine control of moulting, except in the regulation of the moulting hormone, ecdysone (see below). To test this hypothesis, we set out to define the neuropeptide and G-protein coupled receptor complement of crabs throughout the moult cycle and to define their functionality for comparison with insect systems. Thus, this WP was integral to the success of all other WPs associated with this project in that it provides gene transcript sequence data for neuropeptide and G protein-coupled receptor discovery and their temporal quantification. To date we have used Illumina HiSeq2500 sequencing to generate stage specific transcriptomes for the CNS, epidermis and Y-organ (n=5 per moult stage) from a total of over 1.2 billion raw reads! Complementary DNA libraries were indexed, pooled for sequencing and later de-convoluted in silico. The resulting transcriptomes have enabled us to identify a comprehensive suite of neuropeptide precursors from the nervous tissues, including all those anticipated from comparison with insect models. In summary we have revealed over 400k transcripts, 72 of which are putative neuropeptides, including eclosion hormone-like peptides, eclosion triggering hormones, various diuretic hormones (DH31 and DH44), kinins, adipokinetic hormone orthologs (RPCH), corazonin, adipokinetic-corazonin like peptides etc. Moreover, we have defined the expression profiles of neural transcripts. Our data indicate that the majority of these are constitutively expressed but we have identified differential expression of 4 unique neuropeptide sequences over the moult cycle (N=5), one of which is a homolog of insect ETH; we are now targeting ETH along with some other likely candidates (such as EH, corazonin and corazonin receptor) for RNAi studies (below). Validation of our NGS expression data by quantitative PCR gave identical results, lending further confidence in our informatics approaches; our superb post-doc Drew Oliphant did a tremendous amount of work to ensure all NGS data are exceptionally robust and has considered all the latest informatics developments as well as evaluating these new approaches applied to our type of analyses. These data have been made available on NCBI repositories and we are published this work in BMC Genomics journal. We have used these transcriptomics data to generate tools essential for deep exploration of the ecdysis endocrine cascade in our chosen model. For instance we have synthesized peptides of interest for immunoassay development and antisera and in-situ probes for use in histology/in situ hybridization to describe the localization of these neuropeptides (reported by Bangor). Critically, we have also identified cognate receptors for a number of these neuropeptides. It should be noted that until the start of this project not one single crustacean GPCR had been functionally identified. Happily, the NGS transcript data has been used to enable the functional characterization of more than 7 GPCRs in a bioluminescence (aequorin) CHO cell-based based reporter system (reported by Bangor). We have published two papers in 2018 (both papers in Frontiers in Neuroscience) on the functional characterisation of Corazonin and red-pigment concentrating hormone and Diuretic hormone 31 receptors (DH31R).
Recently we have made a significant discovery concerning the so-called 'pigment dispersing hormones (PDH). These small peptides are well known in insects (known as pigment dispersing factor, PDF) where they orchestrate circadian rhythms as modulators of the nervous system (neuromodulators) and have now been found in many invertebrate taxa. In crustaceans PDH was identified as a neurohormone that is liberated into the blood to effect changes in colour cells (chromatophores). However, in our crab transcriptomes we discovered multiple forms of PDH in the nervous system and putative receptors for these. Using this information we were able to match four PDHs to two PDH receptors and map their locations in the nervous system and other tissues. This comprehensive functional and anatomical survey has, for the first time, allowed us to describe the PDHs that are likely neuromodulators (and therefore involved in circadian clock function) and those that are hormones. These findings also provide an evolutionary perspective on PDH/PDF evolution because crustaceans pre-date insects. This paper is published in Frontiers in Neuroscience.
Thus, our NGS approach has been wholly successful and we now continue to pursue the function of other identified peptide ligands and their receptors that are homologous to those known for insect ecdysis, in crab moulting (see below). In summary, the sequencing aspect of this grant has been delivered on and exceeded. On publication of the transcriptomics paper we will release all the transcriptome data to NCBI for the benefit of other researchers. Toward the end of the project we also sequenced transcriptomes from other tissues, including the gut and associated tissues. We are using these data to search for crab 'ETH' producing cells, analogous to the insect Inka cells which are crucial to the ecdysis programme in this closely related arthropod group. This work continues beyond the tenure period. WP5. Identification and functional analysis of peptide hormone receptors unique to crustaceans- the MIH receptor. In arthropods the development of a new cuticle and the moulting process is dependent on ecdysteroids such as 20-OH ecdysone. The defining difference between insect and crustacean growth and development is the neuroendocrine regulation of ecdysteroid synthesis. In insects, ecdysteroid synthesis occurs in the prothoracic glands and is stimulated by prothoracicotropic hormone, synthesized in the brain. In stark contrast, crustacean steroidogenesis in the Y-organs, is under inhibitory control by moult-inhibiting hormone, released from the eyestalks. In order to 'close the loop' on the MIH pathways we still need to define the receptor, which is thought to be a GPCR. Given that the YO is derived from the epidermis we have used an in-silico subtraction of YO from epidermis transcripts to identify candidate GPCRs unique to the YO and therefore potential MIH receptors. To date we have identified seven transcripts that code for GPCRs that are expressed only in the YOs and we have de-orphanised one of these GPCRs as a corazonin receptor (Bangor). This finding was entirely unexpected and has opened another intriguing avenue that we are currently exploring- what is the role of CRZ in moult control in crabs? Since this tantalizing discovery we have shown a hitherto unknown role for CRZ in the regulation of ecdysteroidogenisis and we are currently completing some very exciting and potentially impactful experiments for publication and have been awarded further BBSRC funding to pursue this line of work (2020-2024). We are convinced these data will reshape the current paradigm of crustacean moult control! At the same time, we continue to apply our YO-specific GPCRs to the aequorin assay to de-orphanise them and we are confident that we will achieve the functional characterization of the MIHR in within the next 12-18 months. WP4- Function of peptide hormones and cognate ligands: RNAi-based studies. Integral to the principle aims of this project is the identification of functions for the neuropeptides and receptors we have identified. Given the intractable nature of crabs from a genome editing/transgenic perspective we aim to suppress mRNA expression using dsRNAi approaches. To date these approaches have failed. Despite gargantuan efforts by the Aberystwyth PDRA (Oliphant) none of the dsRNAi constructs provided reliable and robust gene knockdown and we are unwilling to report on sub-optimal outcomes form these endeavours. Nevertheless, we continue to seek alternative avenues to pursue a loss of function strategy in defining the role of ligands and their receptors.
Exploitation Route Our genetic databases is publicly available in accord with our data management statement and BBSRC guidelines. These huge datasets will help others in crustacean and arthropod biology to mine for gene transcripts and will be on interest to evolutionary, developmental, neuro and general biologists. We have also generated antisera, gene constructs and expression assays that will be freely available upon request- indeed we operate a voluntary 'open freezer' policy to workers in the scientific community.
Sectors Agriculture, Food and Drink,Environment,Other

 
Description Capital Equipment Bid (BBSRC Year End funds)
Amount £130,000 (GBP)
Organisation University of Wales 
Department Institute of Biological Environmental and Rural Sciences (IBERS)
Sector Academic/University
Country United Kingdom
Start 04/2014 
End 03/2015
 
Title Anti-Neuropeptide antisera 
Description We have generated a suite of sera against various crab neuropeptides including DH31, EH, ETH (carcikinin), corazonin and ACP. 
Type Of Material Antibody 
Year Produced 2017 
Provided To Others? Yes  
Impact These sera have been used to generate manuscripts which are still in preparation or are under review. One serum, raised against Carcinus maenas Corazonin has been used and covered in publication (Frontiers in Neuroscience - Alexander et al, 2018). All others are available upon request. 
 
Title Taqman qPCR assays 
Description We have designed and validated a range of Taqman quantitative PCR assays to the following transcripts in Carcinus maenas: DH31 and DH31R; PDHI, II and III and PDHR; CCAP and CCAPR; CRZ and CRZR; EH and ETH; RPCH and RPCHR. The design parameters and assay details are freely available on request (including sequences of all oligo used). 
Type Of Material Technology assay or reagent 
Year Produced 2018 
Provided To Others? Yes  
Impact Assays for CRZR and RPCR have been published in Frontiers in Neuroscience (Alexander et al 2018). 
 
Title Green shore crab (Carcinus maenas) epidermis and Y-organ (YO) transcriptomes throughout the moult cycle 
Description We have generated a very high quality transcriptomic database for two tissues involved in arthropod moulting - the epidermis and the Y-organ (YO). The YO is derived (developmentally) from the epidermis but is the only site of ecdysteroid (moulting hormone) synthesis in crabs and also is under the direct inhibitory control of moult-inhibiting hormone (MIH) released form the eyestalk ganglia. We have generated these transcriptome data over a complete moult-cycle to enable subtractive approaches and identify YO-specific G-protein coupled receptors that are candidates for ecdysteroid control via MIH (i.e. the MIH receptor). The database will be released to NCBI once we have published on these data. 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact We have not yet released or published these data but anticipate doing so very soon (dated March 2017). 
 
Title Green shore crab (Carcinus maneas) moult cycle neurotranscriptome 
Description We have generated a very high quality neurotranscriptome for the green shore crab in order to identify neuropeptides and G-protein coupled receptors in the central nervous system throughout the entire moult cycle and that may play a role in ecdysis (moulting). This has yielded an enormous genetic data resource that will become available once we have published the outcomes of this work as relevant to our project. 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact We have not yet made this database available but anticipate doing so very soon (dated March 2017). Once we have published data resulting from this work we will release the data to a public database (NCBI).