Reactive Oxygen Species, metabolic by-products of mitochondrial respiration, as conserved regulators of synapse growth and neuronal homeostasis.

Lead Research Organisation: University of Cambridge
Department Name: Zoology

Abstract

Nerve cells communicate with each other using electrical signals, which require large amounts of energy, making the brain the most fuel-demanding structure in the body. Brains therefore use a great deal of oxygen to generate the energy required for processing information, controlling behavior and for cognition. Brains are also very sensitive to ageing and most of us have experience of ageing relatives with faulty memories. By using a lot of oxygen to generate energy, the brain also produces a by-product, which becomes toxic when allowed to accumulate. This by-product is toxic forms of oxygen and is termed 'Reactive Oxygen Species', or ROS for short. Normally, the brain can cope with low levels of ROS that are a by-product of normal metabolism, because it has a battery of protective mechanisms to neutralise ROS. But as the brain ages, these self-repair mechanisms become less efficient, and as a consequence ROS levels become excessive and signs of ROS-caused damage more evident. ROS chemically react with and damage the building blocks of cells. As waste material accumulates, it can also generate a second source of ROS, generated by metals within the accumulated waste material reacting with oxygen to produce more ROS. Thus, a self-perpetuating cycle of damage ensues. Because of this cyclical nature, it has remained unclear precisely how ROS affect the nervous system in the first instance, as opposed to secondary or tertiary knock-on effects. We previously found that the connections between nerve cells, called synapses, grow excessively when ROS are excessive. Synapses are known to adjust their size in response to neuronal activity, though how nerve cells sense activity levels is incompletely understood.

With this proposal we are tackling these fundamental questions. First, we are investigating the hypothesis that during normal nervous system development and function, cells use ROS as signals that inform them about their activity levels. Next, we will study the molecular mechanisms by which ROS regulate the size and function of synapses. Last, we will test the hypothesis that ROS signaling is evolutionary conserved and we will examine how discoveries made in the genetic model system of the fruitfly also apply to vertebrate nerve cells.

We use the fruitfly, Drosophila, as an experimental system, because the high evolutionary conservation of basic cellular processes has meant that most discoveries made in the fly, including mechanisms that underlie learning and memory, are directly pertinent to our understanding of the human brain. Importantly, the fruitfly is one of the most powerful genetic experimental organisms and allows unprecedented precision for genetically manipulating identified neurons and their connecting partners.
In our experimental system, when we induce activity in neurons, but reduce ROS at the same time, we prevent the synapse overgrowth that we see when we induce activity or ROS alone. This suggests that neurons use ROS generated during energy manufacturing as a readout for their activity and that ROS signal synapse growth. We have discovered the function of one protein, DJ1 (aka Parkinson Disease Protein 7) as important for sensing ROS levels and then activating a known cell growth promoting pathway to enlarge synapses. These DJ1 mediated processes that we have observed are very likely of critical importance to our understanding of the decline in brain function as we age, and this proposal aims to investigate DJ1 function further.

In summary, this work will help us to understand the mechanisms, events and molecules that cause change and, ultimately, failure in nerve cell function in the ageing brain. The results of this work have every potential to aid the discovery of drugs and treatments to alleviate adverse effects of ageing and will thus, in time, benefit society as a whole.

Technical Summary

Reactive oxygen species (ROS) accumulate as cells age, and in the brain oxidative stress is thought to be a major factor in cognitive dysfunction associated with ageing and neurodegeneration. The goal of this application is to study ROS signalling during normal nervous system development.
For the most part, we use the Drosophila larva as a model and use genetic expression systems that we and others have developed to genetically manipulate identified, connecting motoneurons their target muscles, but also their presynaptic partner interneurons in the CNS.
1. We will test: a) whether ROS, metabolic by-products of respiration, act to signal neuronal activity levels and are necessary for development and homeostasis of synapses; b) the nature and sites of action of ROS. We will manipulate ROS and/or activity levels in individual cells, image synaptic terminals (neuromuscular junctions - point scanning confocal; central dendrites - field scanning confocal), and use 3D reconstruction software (Amira) for morphometric analysis. We will make electrophysiological recordings from muscles (sharp electrode) and motoneurons (patch clamp) to determine the physiological effects of ROS signalling.
2. To study the underlying molecular mechanisms we will focus on DJ-1b, which we identified as critical for sensing ROS signalling. We will use genetic engineering to determine if oxidation of DJ-1b leads to changes in its subcellular localisation, and/or binding partners. We will apply tandem affinity purification coupled with quantitative mass spectrometry to identify additional DJ-1b interacting proteins regulated by the cellular redox status and characterise their roles in synapse development and function.
3. We will aim to translate observations made in the fruitfly to a vertebrate model system by working with rat hippocampal primary neurons in culture. We will test the requirement for ROS signalling and the rat homologue of DJ-1b, Park7, in regulating synaptic terminal growth.

Planned Impact

Who will benefit from this research proposal?
Our research uncovers a role for reactive oxygen species (ROS) as physiological signals in the maintenance of normal synaptic growth and function. A failure to deal with increased ROS and the accumulation of ROS induced damage are hallmarks of ageing and neurodegeneration. Our research therefore is important to our understanding of the formation, functioning and homeostasis of a healthy brain, and through this, the processes that decline and fail as ROS accumulate due to age or disease. Our work will benefit three main constituencies: 1) ageing individuals, their carers and dedicated health professionals. 2) Academics studying normal neuronal function, 3) Academics and health professionals involved in the study of neurodegenerative disease.

How will they benefit from this research?
We have put in place the following strategies to maximise impact, through efficient communication with potential beneficiaries, for the duration of the grant:
A) Academic Communication: We will work where possible through publication in Open Access journals, or pay premiums to grant open access. We will aim for journals with the highest impact factors to ensure maximum readership and seek broad subject journals to ensure the widest readership. We will attend and publicise our work at prominent conferences and meetings in the neuroscience, ageing, dementia and neurodegeneration fields, through posters and talks. The PDRAs will be encouraged to talk at meetings to generate profile for the study and their own career progression. Reagent generated, e.g. genetic strains and DNA constructs, will be disseminated freely, or lodged in not-for-profit stock centres that allow ready (and cheap) purchase, such as Addgene and the Bloomington stock centre. Our Drosophila data will contribute to Flybase and Flymine entries.

B) Public Communication: STS, SC and ML are well versed at communicating with schools and the general public. STS is well versed with speaking on local radio, having done so on more than one occasion. All three labs have active schools outreach events that run regularly, both to the genera public, e.g. during Science Week, and schools. We will use our departmental and laboratory public websites to highlight our findings and University press officers to communicate with the press to disseminate news rapidly.

C) Communication with health professionals and relevant societies and organisations: This proposal has longer-term benefits for ageing individuals, carers, the social and healthcare systems and thus our society and its economy in general. Potential benefits are discoveries that will contribute to therapeutic strategies for improving cognitive function in an ageing population, lowered incidence or slowed onset rates for dementia. This proposal will increase our understanding of important cellular and molecular events that are triggered by Alzheimer's, Parkinson's, Motorneuron Disease and related conditions. As we identify gene products and signalling pathways as candidates for therapeutic intervention, economic benefits arise: the market for an anti-neuronal-ageing therapeutic or dietary supplements would be considerable. We have put in place regular quarterly meetings with relevant clinicians to review our data and assess how it may be implemented clinically. STS communicates regularly with the Alzheimer's Society through their York office.

Technological Training and impact: Both PDRAs will be trained in the skills and cutting-edge techniques required for the study. Such skills are highly desirable in the scientific work force and transferable to the pharmaceutical sector.
Creating Industrial Impact: We are aware that at this point we have a fundamental study that would be difficult to transfer to translational impact. However, throughout the course of the grant we will continually review our data and its implications for potential translational impact and industrial interaction.
 
Description Reactive Oxygen Species (ROS) are known to increase in nerve cells with ageing and under neurodegenerative conditions. At high levels they cause oxidation, thus effectively damaging, cellular building blocks, such as proteins and lipids. ROS are therefore primarily thought of as deleterious compounds. However, at low levels different species of ROS can also act as signalling molecules, essentially informing cells about their metabolic levels, which in effect reflect activity levels.

We have discovered that in the nervous system ROS are indeed both necessary and sufficient as signals for initiating structural adjustments at synaptic sites, the specialisations at which nerve cells exchange information with one another. We might be the first group to study how such changes occur across the entirety of a nerve cell, demonstrating co-ordination of structural adjustment of both input (dendrites) and output (axon terminal) structures.

We also discovered that hydrogen peroxide is the primary ROS involved in this process and that nerve cells appear to measure their activity levels by reading out the amount of hydrogen peroxide generated. It is generally assumed that hydrogen peroxide is primarily generated as a result of mitochondria producing ATP (the primary currency for cellular energy) and as a constitutive by-product also super-oxide, which is then converted into hydrogen peroxide. Using genetically encoded reporters for hydrogen peroxide we confirmed elevated levels of hydrogen peroxide mediated oxidation in mitochondria following elevated neuronal activity.

We have since explored additional sources of hydrogen peroxide upon neuronal over-activation. Specifically, we examined two NADPH oxidases, Nox and Dual Oxidase. We find that both are indeed required in part for anatomical over-activation phenotypes that we see. Excitingly, we find that while NADPH oxidase generated ROS regulate the size of both pre- and postsynaptic terminal arbors, mitochondrially generated ROS determine the number of synapses within these. In addition, both Drosophila Duox and Nox (like their human homologues) are regulated by intracellular calcium levels, and we have also been able to show that the calcium binding EF-hand domains of the Dual Oxidase protein are indeed required for its function in regulating activity-dependent structural adjustments.

In parallel, we have discovered that DJ-1b, a fly homologue of the Parkinson-7 gene in mammals, is a key sensor for ROS. Our data thus far suggest that it is indeed oxidation of DJ-1b by hydrogen peroxide, which is critical for this signalling process to occur.

We have been able to link physiological outputs to the anatomical neuronal changes that we have observed, as measured by larval crawling behaviour.

Our collaborators in York have meanwhile established vertebrate primary neuronal cell cultures with which to test to what extent our findings in the fly do actually translate to vertebrates. Thus far, preliminary results are promising.
Exploitation Route The importance of this work is that it fundamentally questions how we look at ROS in the nervous system. By realising that ROS levels are critical signals for cellular adaptive responses, we can begin to appreciate differently what goes on when ROS levels go through the roof with ageing and neurodegenerative conditions.
Importantly, working with the fly allows us to study these processes in unprecedented detail at the cellular level, as well as to use the power of its genetics to discover the molecular mechanisms for cellular sensing of ROS levels and its translation into structural and functional changes.
This type of work will form the basis for potential drug targets and new therapeutic approaches.
Sectors Healthcare

URL https://www.biorxiv.org/content/early/2017/08/31/081968
 
Description Developmental Mechanisms of Motor Network Tuning
Amount £956,398 (GBP)
Funding ID 217099/A/19/Z 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2020 
End 12/2024
 
Description Isaac Newton Trust
Amount £10,000 (GBP)
Funding ID 17.24(v) 
Organisation University of Cambridge 
Sector Academic/University
Country United Kingdom
Start 12/2017 
End 04/2018
 
Description Imaging synapse development 
Organisation Heidelberg University
Department Department of Human Genetics
Country Germany 
Sector Hospitals 
PI Contribution In this collaboration we are developing genetic and imaging methodologies that will enable us to image synapse development in a developing central nervous system between identified nerve cells. Our questions will then focus on how this process is regulated by neuronal activity, reactive oxygen species (ROS) and other signalling pathways. We have identified and generated several genetic reagents to this effect.
Collaborator Contribution Our collaborators in Heidelberg, Dr Jan-Felix Evers and his team, have developed and then instructed s in the use of Expansion Microscopy, for imaging synapses (normally beyond the limit of diffraction limited imaging). This has now generated new data, which will be contributing to our next publication.
Impact No outputs as yet, since only recently begun.
Start Year 2016
 
Description Sweeney and Chawla labs, University of York: Reactive Oxygen Species as regulators of synapse growth and function 
Organisation University of York
Department Department of Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution This builds on the existing collaboration with the Sweeney lab at York and extends it to include the Chawla lab, so as to also study the role of reactive oxygen species signalling in vertebrate neurons.
Collaborator Contribution The Sweeney and Chawla labs are in the process of setting up vertebrate cell culture to determine the conservation of the genetic pathways that we have discovered whilst working with the Drosophila model system.
Impact This collaboration has facilitated led to the award of a BBSRC grant, BB/M002934/1, which commenced in November 2014. Moreover, it led to the award of a fully funded studentship to Amrita Mukherjee by the Balfour Trust, Department of Zoology, University of Cambridge. Amrita has begun training in the Landgraf lab in October 2014 and is now completing her research work, ready to write a paper and her PhD thesis.
Start Year 2014
 
Description Biology Taster Day, Jesus College, Cambridge 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact We had organised a Biology Taster Day for sixth form students interested in coming to Cambridge for university.
Year(s) Of Engagement Activity 2017
 
Description Cambridge Science Festival 2016 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Under the auspices of the Cambridge Science Festival, we staged five one hour sessions for groups of the general public to enter a laboratory setting and learn about the importance of invertebrate model system in studying nervous system development, function and cognition. The workshop was primarily designed to give visitors hands on experience with experiments and to engage on a one to one basis with a range of scientists. Ages ranged from 5 - 60 and feedback was outstanding.
Year(s) Of Engagement Activity 2016
 
Description Cambridge Science Festival 2017 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact We run an annual hands-on workshop for the general public under the auspices of the Cambridge Science Festival. 5-6 sessions with 10-14 people each are invited into our lab to see first hand how we use insect model organisms to study fundamental and clinically relevant questions (e.g. diseases of the nervous system, including seizures and neurodegeneration). Our questionaires reported exceptionally positive feedback, sparked off by having one-to-one in depth interactions with PhD students, postdocs and PIs; and the opportunity to do simple experiments and to get access to research grade fluorescence microscopes with which to see nervous systems and even individual nerve cells.
Year(s) Of Engagement Activity 2017
URL https://www.sciencefestival.cam.ac.uk/about/past-festivals/2017-festival
 
Description Science Festival Cambridge 2019 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact We ran a hands-on workshop for the public as part of the annual Science Festival at Cambridge, illustrating how insect model organisms help us understand human conditions. The focus was on nervous system function and behaviour.
Year(s) Of Engagement Activity 2019
URL https://www.cambridgesciencefestival.org/schedule-2019/
 
Description TReND Africa 4th IBRO/ARC School on Insect Neuroscience and Drosophila Neurogenetics 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Organised and staged a week long module as part of the TReND in Africa Neuroscience school in Tanzania. We engaged solidly for 6 days with 18 students selected from all over Africa plus local University staff at the Kampala International University in Dar es Salaam, giving lectures on nervous system development in the mornings and hands on lab training in experimental design and execution till night.
Year(s) Of Engagement Activity 2015
URL http://trendinafrica.org/activities/education/neuroscience-schools/
 
Description Widening participation lectures at Jesus College, Cambridge 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact This year (21. February) I gave two distinct sample lectures to large groups of A-level students as part of the Jesus College widening participation scheme. Students felt stimulated and engaged actively in a debate following these talks, asking probing questions, which showed they had engaged critically and were seriously considering going to university.
Year(s) Of Engagement Activity 2019
 
Description Widening participation lectures at Jesus College, Cambridge 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact This year (15th February) I gave two distinct sample lectures to large groups of A-level students as part of the Jesus College widening participation scheme. Students felt stimulated and engaged actively in a debate following these talks, asking probing questions, which showed they had engaged critically and were seriously considering going to university.
Year(s) Of Engagement Activity 2018