14-PSIL MAGIC: a multi-tiered approach to gaining increased carbon

Lead Research Organisation: University of Warwick
Department Name: Warwick Systems Biology Centre

Abstract

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Technical Summary

We are building on progress that includes expression of pHR in E. coli, cyanobacteria and plants. These advances have put us in a strong position to deliver within the next few years. Mathematical modeling has validated the idea of using a light-driven ion pump for concentrating CO2; it now remains to assemble and express these pumps and validate function in chloroplasts. The idea to use scaffolds to concentrate CO2 at RuBisCO remains a goal, but our strategies have changed in light of new understanding of the interplay between diffusion and kinetics. We have successfully expressed scaffold proteins in cyanobacteria and plants, demonstrating that they can be both targeted to specific sites and that they function to recruit their respective substrates. Our mathematical models predict that the original idea of utilizing these constructs to enhance channeling of CO2 to RuBisCO will have negligible impact on CO2 assimilation. We need now to confirm this prediction in our cyanobacterial systems. A rethinking of the problem of concentrating CO2 at RuBisCO in C3 plants leads to development of a new approach. Our mathematical models highlight the poor CO2 capture probability of RuBisCO as a major constraint. Here, we propose designs to slow the diffusion rate of CO2 in the stroma and increase assimilation by introducing transient (stationary) binding sites near RuBisCO (a CO2 'sponge'), effectively enhancing the native characteristics recently identified in photosynthetic systems. We will use the cyanobacterial system to screen and optimize this approach and will use the scaffolds now proven in our hands to translate these to chloroplasts. Finally, we previously lacked the ability to quantify performance, ie. HCO3- concentration gains. This capability is now available through a lipid vesicle technique.

Planned Impact

This proposal is for fundamental research to develop new conceptual approaches relevant to ideas emerging within the international plant, systems and synthetic biology communities. The research will stimulate thinking around strategies for modelling and for applications of synthetic biology in plants, especially in relation to photosynthesis, and it should strengthen methodologies relevant at many levels from cell to crop engineering. Thus, the research is expected to benefit fundamental researchers and, in the longer-term agriculture and industry, through conceptual developments and approaches to improving carbon capture by plants. The research will feed into higher education training programmes through capacity building at the postgraduate and postdoctoral levels. Additional impact is proposed through public displays and the development of teaching resources building on the background work for this proposal. Finally the research will help guide future efforts in applications to agricultural/industrial systems. The applicants have established links with industrial/technology transfer partners and research institutes to take advantage of these developments. Further details of these, and additional impacts will be found in Part 1 of the Case for Support and in the attached Impact Pathways.
 
Description We have made significant progress in understanding the requirements of C4 biochemistry and the potential for engineering the C4 pathway into C3 plants. RuBisCO, the key enzyme in fixation of CO2 (ultimately into sugars) is unfortunately a very poor enzyme thereby limiting C3 photosynthetic efficacy. C4 plants have devised a means to increase the concentration of CO2 around RuBisCO to increase carbon assimilation rates. They use a special system of CO2 capture - they sequester CO2 into a C4 acid as an intermediary and release the CO2 to RuBisCO. Unfortunately using this C4 cycle costs energy. We examined the single cell C4 plant bienertia to understand the length issues associated with the C4 cycle and demonstrate that it is as efficient or more efficient than C3 at sufficient cell size (published JXB); mature mesophyll cells of bienertia are large. The key issue is spatial separation of the carbon capture and release sites.

The potential gains for agriculture of implementing C4 into C3 are huge, but extremely challenging, either requiring a massive change in leaf architecture (Krantz anatomy) or large cells, as indicated above. By developing a 3D spatial mathematical model we examined the simplest implementation of a C4 pathway into a C3 plant without changing cellular or tissue architecture, to verify, or not, the efficacy problem. Using realistic parametrisation of transport and kinetics, we find it highly unlikely that introducing such a pathway can be more efficient than the original C3. However, we discovered possible designs where the efficacy loss is minimal, but the gain in total carbon assimilation can be substantial (eg 20-100%), and ultimately limited by light availability (submitted). This would translate into increased plant growth, and yields.
Exploitation Route Biotechnological and synthetic biology methods to implement our designs to improve assimilation.
Sectors Agriculture, Food and Drink

URL http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007373;https://academic.oup.com/jxb/article/68/2/255/2627444