Artificial thylakoids: a bio-inspired platform for investigating assembly and organization in multi-layer membranes

Lead Research Organisation: University of Leeds
Department Name: Physics and Astronomy

Abstract

All biological cells, from simple bacteria to human ones, are surrounded by 'membranes' comprised of lipids. Proteins within these membranes facilitate communication between the cell and its exterior, providing functions essential for the life of the cell. Some specialized biological membranes in cells' interior are stacked into multi-layers, allowing a high density of membrane proteins to be packed into a small volume. In plants, stacked membranes enhance the efficiency of photosynthesis, the process used to harness solar energy for growth. This proposal seeks to generate new 3-D arrangements of artificial membranes in the laboratory, to create new structures and functions not found in Nature.

A new "synthetic biology" approach will take the individual protein and lipid components from cells and recombine them into model stacked membranes on solid surfaces. Proteins normally involved in photosynthesis will be used to create well-defined artificial plant-like membranes which can then be used to explore natural processes in a controlled environment. They aim to (1) generate array-patterns of these stacked membranes rich in photosynthetic plant proteins, and (2) to investigate how assembly and protein organisation occurs in these model membranes to inform us on natural systems. Furthermore, these controlled, stacked membrane patterns are expected to have applications in modern nano-devices, such as biosensors.

The research will be led by Peter Adams, a scientist in the Molecular and Nanoscale Physics (MNP) group headed by Prof. Stephen Evans, at the University of Leeds, all experienced with artificial membranes. Collaborators at the University of Sheffield, Dr. Matt Johnson and Prof. C. Neil Hunter, are specialists in photosynthesis and will provide the purified plant proteins needed to assemble these membranes. They will use state-of-the-art "atomic force microscopy" to visualize the arrangement of membrane proteins at the nano-scale and determine their spatial organization. This technique uses a sharp probe to "see by touch" and can resolve minute features as small as one-millionth of a millimeter. Light-based "fluorescence microscopy" and "spectroscopy" techniques will be used to detect the optical properties of the photosynthesis proteins.

In conclusion, these efforts are expected to make substantial advances in the controlled design of 3-D, complex, functional biomaterials.

Technical Summary

Biological cell membranes rely upon complex, hierarchical organization to elicit functional responses. To achieve specialized function some membranes form multilamellar stacked arrangements, such as the photosynthetic thylakoids of chloroplasts. This project aims to develop new artificial 3-D-organized stacked membranes inspired by chloroplast thylakoids. These controlled model membranes will act as a platform to test the factors influencing self-assembly, organisation and function in biological membranes, over multiple scales. A multi-disciplinary approach will combine surface chemistry, nano/micro fabrication, protein biochemistry, spectroscopy and various microscopies to fully explore these membranes.

I will use supported lipid bilayers (SLBs) as a template for building complex stacked membranes. New techniques for patterning membranes in 3-D will be developed. Firstly, I will produce lipid-only SLBs in controlled 2-D patterns and stacking from 2-100 bilayers. Subsequently, SLBs including plant membrane proteins will be generated, including Photosystem II (PSII) and Light Harvesting Complex II (LHC-II). These artificial membrane systems will be used to test the parameters driving membrane assembly in vitro, to inform on the natural system, including interlayer protein domain alignment, PSII array formation, phase segregation of proteins and energy-transfer properties. Atomic force microscopy and fluorescence microscopy (with spectral/ lifetime imaging) will reveal the protein organisation and confirm maintenance of light-harvesting function.

Success in these efforts will represent a major advance in the controlled design of 3-D complex, functional biomaterials. Other membrane proteins, e.g. signalling receptors, could be incorporated, allowing investigation of varied biological processes. Future applications could include artificial photosynthetic devices with enhanced absorption and biosensors with high-protein-density with improved recognition capability.

Planned Impact

David Willetts, the UK government minister for Universities and Science, recently said: "Synthetic biology is one of eight key technology areas... playing an increasingly important part in the global economy over the coming years" (Mar 7, 2013). My proposed research is expected to develop new techniques for synthetic biology; nano/biotech companies could benefit with tools for developing new protein/membrane biohybrid devices. Specifically, our findings could constitute Intellectual Property (IP) of financial interest to UK companies. Further R&D will certainly be needed to exploit any newly developed techniques, leading to benefits over the next 5-10 years. More generally, my research would enhance the economic competitiveness of the UK by promoting the country as a world-leading centre for this emerging field and fostering national and international collaborations that enhance the British 'bio-economy'.

Local schools and museums could also benefit from my research, from the STEM outreach activities that I would carry out. I intend to deliver workshops and presentations in local schools other public forums such as science festivals about: (1) the wonder of plants and solar energy, and (2) nanotech and synthetic biology benefits in a future society. To an audience of adults, the benefits would be (i) cultural, knowledge about modern-day nanoscale science and (ii) effectively information about how scientific research provides worthwhile innovations and economic benefits to taxpayers. To an audience of school children, benefits would be (i) fun and enjoyment of science, (ii) inspiring the scientists of the future. These presentations would be delivered in years 2 and 3 of the fellowship, providing almost instant benefit from these communications.

Public policy makers may be interested in my research as a new form of synthetic biology and as a good use of solar energy research (plant models). As recommended in the RCUK's report "A Synthetic Biology Roadmap for the UK", socially responsible research with public dialogue is needed. Traditional synthetic biology has stirred up negative publicity due to public misunderstanding over genetic modification. My research would promote synthetic biology without the use of animal testing or genetic engineering of plants and could promote effective policy in this field. I will ensure that my findings are available to policy-makers, e.g. press releases by University of Leeds. Public policy can be on a timescale of many years, and may be judged by favourable regulations, funding and reports and changing public opinion.
 
Description My main goal was to assemble model membranes containing photosynthetic membrane proteins as a modular and controllable mimic of the natural photosynthetic system: so-called "artificial thylakoids". This project was successful in using the membrane protein Light-Harvesting Complex II (LHCII) and various lipids in a modular fashion as building blocks to generate several different model systems. This led to one first-name author publication (currently under review), various conference papers and presentations, three PhD projects (ongoing, one BBSRC-funded, two EPSRC-funded), five Masters projects, new methodological tools (see Research Tools & Methods), and opened new avenues for future projects and collaborations. Whilst we have not yet achieved the elaborate 3-D multi-layer membrane systems envisaged, there was success in creating single-layer model membranes that have allowed study of: (i) the role of LHCII in photoprotective energy dissipation, (ii) artificial systems for enhanced energy absorption, (iii) array patterns of micro-scale LHCII. See below:

1. "Correlated fluorescence quenching and topographic mapping of Light-Harvesting Complex II within surface-assembled aggregates and lipid bilayers" (published, DOI:10.1016/j.bbabio.2018.06.011). Under excess light intensity LHCII can adopt a photoprotective state in which excitation energy is safely dissipated as heat, a process known as Non-Photochemical Quenching (NPQ). In vivo NPQ is triggered by combinatorial factors including transmembrane ?pH, PsbS protein and LHCII-bound zeaxanthin, leading LHCII to take up a quenched state. Here, we correlated fluorescence lifetime imaging microscopy (FLIM) and atomic force microscopy (AFM) of trimeric LHCII adsorbed to mica substrates and manipulated the environment to cause varying degrees of quenching. AFM demonstrated that LHCII assembled onto mica into 100nm-wide 2D-aggregates , whilst FLIM determined that LHCII in these aggregates were in a quenched state (reduced fluorescence lifetimes ~0.25 ns) compared to free LHCII in solution (2.2-3.9 ns). LHCII-LHCII interactions were disrupted by lipids, leading to intermediate fluorescent lifetimes (0.6-0.9 ns). To our knowledge, this is the first in vitro correlation of nanoscale membrane imaging with LHCII quenching. Our findings suggest that lipids could play a key role in modulating the extent of LHCII-LHCII interactions within the thylakoid membrane and so the propensity for NPQ activation.

2. "Proteoliposomes as energy transferring nanomaterials: enhancing the spectral range of light-harvesting proteins using lipid-linked chromophores" (published, DOI:10.1039/C9NR04653D). (part of a PhD project) - Our group has established how to form model membranes in the form of proteoliposomes (lipid bilayer vesicles with incorporated membrane proteins) comprised of LHCII and either synthetic lipids (DOPC) or natural plant (thylakoid) lipids. We have excellent control over the composition of these proteolipsoomes and can include a range of protein concentrations and lipids, and interfacing LHCII with non-native energy donor molecules that have absorption in a different spectral region where LHCII normally cannot. This led to a postgraduate project (Ash Hancock), where our publication and ongoing work shows excellent evidence that we can generate a modular light-harvesting system to transfer "extra energy" to LHCII from a synthetic chromophore (here we used a small organic molecule called "Texas Red"). Energy transfer from Texas Red to LHCII in this model system has up to 94% efficiency and LHCII fluorescence is increased up to three-fold. The published procedure offers the modularity to control the concentrations incorporated of TR and LHCII, allowing energy transfer and fluorescence to be tuned. Fluorescence Lifetime Imaging Microscopy provides single-proteoliposome quantification of energy transfer efficiency and confirms that functionality is retained on surfaces. Designer proteoliposomes could act as a controllable light-harvesting nanomaterial and are a promising step in the development of bio-hybrid light-harvesting systems.

3. "Artificial thylakoids: Array patterned photosynthetic membranes" (ongoing as part of a PhD project) - we successfully patterned LHCII into microscale 2-D array patterns using crosslinkers after micro-contact printing or masked-vapour deposition of silanes, in collaboration with University of Sheffield (methods of C. Vasilev, C. N. Hunter and M. P. Johnson). We are developing further ways to generate multi-layers of these LHCII and other photosynthetic proteins. We have had good success in adding lipids to these systems to generate membrane mimics. We are pursuing other methods to generate nanoscale and microscale lipid and protein patterns.
Exploitation Route The photosynthesis community may adopt FLIM/ AFM as a useful tool for analysis (see Research Tools & Methods).
Further use of proteoliposomes as good models for biomembranes.
Sectors Agriculture, Food and Drink,Energy,Environment

URL https://eps.leeds.ac.uk/physics/staff/4098/dr-peter-adams
 
Description "Leeds integrated atomic force and confocal microscopy for life science applications" (ALERT: Mid-Range Equipment Initiative)
Amount £299,940 (GBP)
Funding ID BB/R000174/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 08/2017 
End 08/2018
 
Description "Model Membrane Platforms for Light-Harvesting" (Royal Society International Exchange)
Amount £12,000 (GBP)
Funding ID IEC\R3\183029 
Organisation The Royal Society 
Sector Charity/Non Profit
Country United Kingdom
Start 03/2018 
End 03/2019
 
Description 250 Great Minds (University Academic Fellowship)
Amount £50,000 (GBP)
Organisation University of Leeds 
Sector Academic/University
Country United Kingdom
Start 08/2015 
 
Description Controllable model membranes and new quantitative analyses to interrogate light harvesting proteins
Amount £475,101 (GBP)
Funding ID EP/T013958/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 09/2020 
End 08/2023
 
Description Multiscale structural basis of photoprotection in plant light-harvesting proteins
Amount £62,846 (GBP)
Funding ID BB/T00004X/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 12/2019 
End 09/2022
 
Title A FLIM/ AFM platform for analysis of model membranes on mica 
Description Atomic Force Microscopy (AFM) and Fluorescence Microscopy with Lifetime measurements (FLIM) were validated as highly complementary techniques to use in parallel for excellent characterization of optically-active systems. This allow structural information (nanoscale topographic mapping) to be related to functional information (energy transfer, or quenching of fluorescence). This allowed in vitro correlation of nanoscale membrane arrangement with photo-protective energy dissipation in LHCII. Future developments should attempt to use AFM and FLIM on a combined instrument, if possible, as this would allow SIMULTANEOUS and SPATIALLY-CORRELATED imaging of these properties. 
Type Of Material Technology assay or reagent 
Year Produced 2018 
Provided To Others? Yes  
Impact This tool can be used to study the organization and function of photosynthetic proteins, i.e. their nanoscale membrane arrangement and their energy transfer (or energy dissipation). 
 
Title Dataset for a study correlating fluorescence quenching and topographic mapping of LHCII aggregates and lipid bilayers 
Description This dataset shows the raw data, analysed data and documentation related to figures and tables from the study "Correlated fluorescence quenching and topographic mapping of Light-Harvesting Complex II within surface-assembled aggregates and lipid bilayers". This includes: absorbance and fluorescence spectra; images from atomic force microscopy (AFM) and fluorescence microscopy; analysis of fitting of fluorescence spectroscopy data (FLIM); calculation of excitation power. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact Publication in the journal Biochimica et Biophysica Acta - Bioenergetics. 
URL http://archive.researchdata.leeds.ac.uk/377/
 
Title Dataset for the study of proteoliposomes as energy-transferring materials: enhancing the spectral range of light-harvesting proteins using lipid-linked chromophores 
Description This dataset shows the raw data, analysed data and documentation related to figures and tables from the study "Proteoliposomes as energy transferring nanomaterials: enhancing the spectral range of light-harvesting proteins using lipid-linked chromophores". This includes: absorbance and fluorescence spectra; images from fluorescence microscopy; analysis of fitting of fluorescence spectroscopy data (FLIM); other graphical analyses; tabulated numerical data. 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
Impact Publication in the journal Nanoscale. 
URL http://archive.researchdata.leeds.ac.uk/556/
 
Description Collaboration between Hunter and Johnson groups in Sheffield and Adams group in Leeds 
Organisation University of Sheffield
Department Department of Molecular Biology and Biotechnology
Country United Kingdom 
Sector Academic/University 
PI Contribution I have used the various techniques learned from my collaborators (described below) to purify, characterize and nano-pattern the plant protein LHCII at University of Leeds, my institution.
Collaborator Contribution Dr M P Johnson (MPJ) has trained me, Dr P G Adams (PGA), on various techniques for the purification and characterization of photosynthetic proteins from spinach (extraction protocol, sucrose gradient sedimentation, further purification by FPLC, absorbance/fluorescence spectroscopy, native gel electrophoresis). Dr C Vasilev (CV) trained PGA on a novel technique for nanopatterning of photosynthetic proteins. CV performed important experiments on a unique custom-built microscope (fluorescence microscopy with correlated single particle emission and lifetime spectroscopy). Expert advice on experimental design and progress from both MPJ and Prof C N Hunter (CNH).
Impact Completion of one study that was published in 2018: "Correlated fluorescence quenching and topographic mapping of Light-Harvesting Complex II within surface-assembled aggregates and lipid bilayers" (DOI - 10.1016/j.bbabio.2018.06.011). Multi-disciplinary between chemistry, biology and physics.
Start Year 2015
 
Description LANL 
Organisation Los Alamos National Laboratory
Country United States 
Sector Public 
PI Contribution Conceptual design of materials desired for micro/nanofabrication. Photomask design in CAD software.
Collaborator Contribution Fabrication of silicon master template with micro/nano-array patterns etched into the silicon. Quartz photomask with micro/nano-array patterns in the chrome mask. These allow the controlled and ideal organisation of photosynthetic proteins and membranes into pre-defined arrays. These are being used in ongoin working in the Adams lab.
Impact In progress
Start Year 2015
 
Description Astbury Conversation 2016 public exhibition 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Over 100 members of the public (including school groups, general interest, business and industry) attended an exhibition displaying the interdisciplinary research and wider interest in science in with visually stimulating and interactive stalls, each presented by University of Leeds (Astbury Centre) researchers. Through discussions at the event we were able to have a two-way conversation with the public about what inspires our work and their own interests.
Year(s) Of Engagement Activity 2016
URL http://www.astburyconversation.leeds.ac.uk/