Nanostructured biomaterials: investigating hierarchical calcite crystal formation

Lead Research Organisation: University of Edinburgh
Department Name: Sch of Chemistry

Abstract

Living organisms are well known to produce complex mineralised structures that are used for a wide variety of functions, such as navigation, support and protection of soft parts of the body, among others. The formation of such mineralised tissues requires an intricate biological machinery that controls all steps involved in mineralization, from controlling the transport of ions to the mineralisation site to controlling crystal nucleation, growth and morphology and the formation of micron- and macro-sized mineralized tissues. To date, no study could address how all these factors are integrated during the biomineralisation process. As such, what is missing is a fundamental understanding on how cells control processes occurring at different stages and lengths scales, going from the transport of ions to the mineralisation site to crystal nucleation, growth and assembly of the crystals into a hierarchical multi-crystalline mineralised tissue.
This issue in the long term, will provide biologists and chemists with new tools to design and synthesise advanced materials with potential applications for biomedical, industrial and technological applications.
The aim of this project is to understand how cells control the formation of mineralized tissue, from the first crystals that are formed at the nano-scale, to the mature mineral that is composed of crystals organised in a higher-order structure. For this, we will investigate the formation of coccolith scales made of calcite that are produced by the unicellular marine algae Emiliana huxleyi and Coccolithus pelagicus. These unicellular provide unique models in which all stages in mineralisation, occurring at all length scales - from the onset of mineral formation to the mature mineral - can be investigated in a single system and in a time-resolved manner to elucidate how they contribute to the formation and overall properties of the biomineral.
To achieve this aim, we will combine confocal microscopy, cryo-scanning electron microscopy and cryo-transmission electron microscopy. These techniques will provide detailed structural and morphological information on all stages of mineral formation. We will focus on the following aspects:
1- Understand the mechanisms of transport of CaCO3 to the coccolith vesicle, which is the mineralisation site. We will combine live-cell imaging and cryo-scanning electron microscopy, to visualise the transport of calcium ions to the mineralization site during mineral formation;
2- Elucidate the mechanisms of control over crystal nucleation, growth and morphology. We will address how oriented nucleation is controlled by an organic template, and how crystal morphology is shaped during coccolith formation. This objective will be achieved using cryo-transmission electron microscopy (cryoTEM) to characterize the different stages of coccolithogenesis in situ;
3- Understand the nature of the initially deposited mineral. We hypothesise that the mineral is initially deposited as a non-crystalline precursor which later crystallises into calcite. We intend to characterise this initial mineral phase and understand its role in the formation of coccolith structures. This objective will be achieved combining cryoTEM with Raman spectroscopy to characterise the initially deposited mineral phase, and follow the development of crystallinity.
Taken together, this study will be the first time in which all stages in biomineral formation will be visualized in a single system. It will reveal unprecedented information on how living organisms control and tailor the size, morphology and construction of complex mineralized structures at all length scales. In the long term, these results will lead to new strategies for the synthesis of novel materials with controllable size, structure and material properties for several industrial and technological applications.

Technical Summary

The formation of mineralised tissues such as bone, teeth and shells requires an intricate cellular machinery that regulates the following factors: a) the transport and deposition of ions to the mineralisation site; b) the nucleation of crystals on an organic substrate and the timing of nucleation; c) crystal growth along specific directions to shape its morphology; and d) how individual crystals come together to form a hierarchical structure. The goal of this research is to elucidate how all these factors are controlled during biomineralisation, leading to the formation of a complex mineralised tissue. For this, I will study coccolith biomineralisation in the unicellular marine algae Emiliana huxleyi and Coccolithus pelagicus as model systems. We will focus on the following aspects:
1- Understand the mechanisms of transport of CaCO3 to the mineralisation site. We will combine live-cell imaging by confocal microscopy and cryo-scanning electron microscopy, to visualise the transport of calcium-containing granules to the mineralization site;
2- We will elucidate how oriented nucleation is controlled by an organic template, and how crystal morphology is shaped during coccolith formation. We will use cryo-transmission electron microscopy (cryoTEM) to characterize the different stages of coccolithogenesis in situ;
3- We will study whether calcite is preceded by an amorphous calcium carbonate precursor and the role of this phase in the formation of coccolith structures. We will combine cryoTEM with Raman spectroscopy to characterise the initially deposited mineral phase, and follow the development of crystallinity.
This study will be the first time in which all stages in biomineral formation will be visualized in a single system. It will reveal unprecedented information on how living organisms control and tailor the size, morphology and construction of complex mineralized structures.

Planned Impact

In the short term, the beneficiaries from this proposed research will be scientists from other research fields and institutes. This study will represent the first time in which the whole process of mineral formation by organisms will be visualised in a single system, from the transport of mineral, to the onset of crystal nucleation, crystal growth and formation of a mineralised tissue. Thus, it will reveal unprecedented information on how living organisms control and tailor the size, morphology and construction of complex mineralised structures at all length scales. Thus, this research will have a strong impact in the fields of biomineralisation, crystal growth, biomaterials and biomimetic synthetic chemistry, significantly stimulating research in those areas.
In addition, the astonishing material properties of biominerals often combine strength, toughness, sophistication, miniaturization, resistance and adaptability as the result of the integration between the organic and inorganic phases and their hierarchical assembly into complex structures. We anticipate that project outputs will provide new tools to further expand our understanding on the formation and properties of functional biomaterials, and to design synthetic routes to control and tailor the size, shape, complexity and function of crystals and biomaterials. In the long term, this understanding will lead to new routes for the synthesis of specialized hybrid organic-inorganic materials such as tissue engineering scaffolds, re-enforced polymers, sensors, catalyst supports and opto-electronic devices. The feasibility of this approach has already been demonstrated in the fields of nanoelectronics, semiconductors, nanowires, silicification and biomedic engineering, where materials with controllable sizes, composition, morphology, crystallinity and hierarchical organization have been produced.
A further impact this research will have is in developing environmentally-friendly methods to the fabrication of advanced, functional materials. The formation of biominerals in Nature demonstrates that such advanced hybrid materials can be synthesised in aqueous media, under ambient conditions and using renewable feedstocks exclusively. These conditions are in stark contrast with the currently used industrial synthetic methods, which place a high demand on natural resources and have a high ecological footprint. It is our aim, with this project, to develop biomimetic routes using water-based production methods effective at ambient temperatures and provide an alternative to oil-based polymers for the synthesis of materials, addressing current health, industrial, technological, energetic and ecological-related challenges.
Finally, ocean acidification due to an increase in CO2 emissions is one of the challenges our society currently faces. Coccolithophores play an important role in the global carbon cycle and in controlling the alkalinity, carbonate chemistry and CO2 cycle in the oceans. Several studies have already shown that elevated CO2 levels affect calcification by coccolithophores, however the mechanisms are not understood. Importantly, the question of how coccolithophores will respond to future high CO2 conditions will have significant implications to for the ocean's carbon cycle and for global climate. Therefore, elucidating biomineralisation mechanisms will help scientists understand the effect of ocean acidification on calcification and will allow the use of these organisms as proxies to gauge the environmental impact of increased CO2 emissions and content in the oceans.
Overall, this research will have a broad impact in a number of different areas, spanning biology, chemistry, materials chemistry, the biomedical, technological and industrial sectors, and the environmental sciences. It will significantly help the UK to maintain a leading position in scientific research and in the industrial sector.

Publications

10 25 50
 
Description 1) We have successfully established coccolithophore culture of the following coccolith species: Emiliania huxleyi, Pleurochrysis carterae; Gephyrocapsa oceanica and Umbilocosphera foliosa. This completed the Objective 1, outlined in the grant proposal.

2) We successfully developed a technique to purify the intracellular compartment where calcification takes place and visualised the calcite crystals at their early stages of formation in their native, hydrated state. This refers to the first 2 milestones outlined in the Objective 3 in the grant proposal. Using this technique, we purified crystals at different stages of formation and imaged their growth and maturation over time. This revealed 1) the sequence and mechanism of crystal growth; 2) how the crystals interface with the organic scaffold template as they grow and become mature; 3) how the structure as a whole develops; 4) how crystal morphology is controlled during coccolith formation, via a mechanism where adjacent crystals compete for space as they grow, pretty much restricting the directions in which neughbouring units can grow. This mechanism was identified for the first time; and 5) we identified, for the first time an organic template that creates a compartment that templates crystal growth. This will be the subject of future research, as the identification of such compartment in coccolithophores is unprecedented.

3) Additionally, 2 side projects developed from this project:
- Combining cryo-transmission electron microscopy and tomography with super-resolution microscopy, we characterised the 3D morphology of the organic mineralisation scaffold and mapped the location of chemical functional groups that control nucleation. This shows, for the first time, the key players that control crystal nucleation in coccolithophores, revealing the nucleation mechanisms. These findings are being prepared for publication and will lead to a grant application for follow-up studies.

- We developed a technique to encapsulate whole cells inside single crystals of calcite. This project has implications in 2 different areas: a) it will provide new insights into the mechanisms of crystallisation; and b) it can be used as a new method for drug delivery. Cells can be preloaded with any chemical or drug of choice, and once they are incorporated inside the crystals, the drugs are protected from environmental factors that could cause their degradation - such as UV light, humidity, etc. The drugs can then be released upon slight acidification of the medium, which will cause the crystals to dissolve and release their content. These findings are currently being prepared for publication.
Exploitation Route Regarding the main goals of the project, our outputs will have significant impact in understanding the mechanisms by which coccolithophores control mineral formation. We are providing the first clues regarding the chemistry of the nucleation sites that promote calcification. Ways forward from this project include: 1) doing similar studies on other species that produce coccolith scales with different morphologies. This will inform on how conserved calcification mechanisms are among different species, and how the surface chemistry of the base plate controls the hierarchical construction and patterning of the scales. 2) Our work on purifying coccoliths at different stages of formation already led to a successful application for beam time at the Swiss Light Source to do in situ ptychography to study more in detail the development of coccoliths inside the cells. 3) Understanding the mechanisms of biomineralisation will help to understand how ocean acidification impacts calcification and hence marine life. Now that we have established a protocol to extract coccoltihs from the cells to characterise its development, it is possible to repeat these experiments under conditions that mimic ocean acidification to understand the impact of antropogenic change on b such an important biological process.

As for the cells occluded inside crystals, we envisage that they will have an impact on 2 different fields: crystal engineering, in the study and development of techniques to occlude liquids inside crystals in a controlled way, and thus generate novel composite materials; and in pharmaceuticals, as it can prove a viable route for improving the shelf life of drugs and a new drug delivery method.
Sectors Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description Hierarchical materials: Evolution of coccolith ultrastructures 
Organisation Diamond Light Source
Country United Kingdom 
Sector Private 
PI Contribution We designed a set of experiments aimed at measuring the growth of calcite formation in situ by coccolithophores using high-resolution powder X-ray diffraction, following the research objectives outlined in this current research grant. These experiments were submitted as an application for beam time at the Diamond Light Source, I11 (high-resoluttion powder XRD beam-line), which was successful. In addition, we designed experiments to probe the effect of coccolith-associated polysaccharides in promoting calcite nucleation and growth in vitro as a model system to understand the funtion of these macromolecues in controlling calcite crystal formation during coccolithogenesis in vivo.
Collaborator Contribution Our collaborators contributed with the design of the experiments carried out at Diamond Light Source, support during data acquisition and contributed to the analysis and interpretation of the results.
Impact It was not possible to measure the development of calcite crystal formation within a population of living cells because of the high intesity of the scattering from water, which masked the scattering from the calcite crystals. We characterised the effect of the polysaccharides extracted from the coccolithophores on calcite nucleation and growth. We determined that 1) the polysaccharides are unique in that the act as nucleators of calcite, which points to a similar role in vivo - i.e. they are responsible for inducing the initial nucleation of calcite during coccolithogenesis; 2) the polysaccharides select the polymorph type of calcium carbonate, namely they induce the formation of calcite even under conditions where aragonite and vaterite (less thermodynamically stable polymorphs of calcium carbonate) are favoured; 3) the polysaccharides do not occlude inside the crystals of calcite formed in vitro. These results are of high importance in the field. They are being currently prepared for publication and will be submitted to Nature Communications.
Start Year 2016
 
Description Super-resolution microscopy 
Organisation University of Edinburgh
Department Institute of Genetics & Molecular Medicine
Country United Kingdom 
Sector Academic/University 
PI Contribution We brought the project, currently funded by this BBSRC grant.
Collaborator Contribution The collaboration with Dr. Ann Wheeler, Institute of Genetics and Molecular Medicine, University of Edinburgh, gave us access to super-resolution microscopy techniques. Her expertise, combined to the access to the instrument, were essential for the completion of this project.
Impact As a result of this collaboration, I was invited to give a talk at the annual ESRIC (Edinburgh Super-Resolution Imaging Consortium) symposium in January 2018. Furthermore, the outputs of this collaboration are included in a manuscript that is being prepared for publication. Finally, a new research proposal that is continuing this collaboration has been submitted to BBSRC in the January 2018 responsive mode, with Dr. Wheeler as a co-applicant.
Start Year 2017
 
Description Doors Open Day - September 2016, university of Edinburgh 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Purpose: Part of the country wide Doors Open Day, giving the public the chance to visit buildings that aren't usually open. Description: Ran drop in activities as previously mentioned, had a pH experiment as part of the campus wide treasure hunt and made liquid nitrogen ice-cream, discussing heat transfer and states of matter. People were very interested by the ice cream, as liquid nitrogen always puts on an exciting show with lots of water vapour 'steam'. Also had visitors who were there for the University Open Day, so we were able to talk to them about studying at Edinburgh and doing chemistry in general. In addition, we took the opportunity to discuss our research and its impact with the general public, bringing awareness of the effect of global warming on the marine life, in particular coccolithophores, and how these organisms can be used as proxys to understand the effects of ocean acidification.
Year(s) Of Engagement Activity 2016
 
Description Dunbar Science Festival 5-6 March 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Purpose: to engage the general public in science, specifically chemistry, under the theme of 'Green chemistry'. Description: Over two days we ran a stall with two different activities for visitors, making slime (polymer chemistry) and learning about pollution and degradation with materials in a water bath. We also took the opportunity to discuss our research with the public, bringing awareness of its importance to the environment, in particular global warming.
Year(s) Of Engagement Activity 2016
 
Description Edinburgh International Science Festival - 25-30 March 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Purpose: to engage the general public in science, specifically chemistry, under the theme of 'Green chemistry'. Description: Drop in activities as with the Dunbar Science Festival, with an addition of molymod molecule building, and using IR to measure pollution with a laptop showing current pollution levels in Scotland. Lots of discussions about waste plastic and how to use less, biodegradability and pollution levels in Edinburgh. Workshops were on 'Fantastic plastic' presenting the positives and negatives of plastic, and giving children the chance to make a bioplastic made from sustainable materials. In addition, we took the opportunity to discuss our research and its impact with the general public, bringing awareness of the effect of global warming on the marine life, in particular coccolithophores, and how these organisms can be used as proxys to understand the effects of ocean acidification.
Year(s) Of Engagement Activity 2016
 
Description Explorathon 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Pecha-kucha talk given in the Explorathon 2016. The purpose of the talk was to disseminate the research activity being undertaken in the current grant to the general public and highlight the importance of the project in the form of a short lecture to the general public. The event was for the general public and about 40 adults attended the talk. The talk gave rise to questions and discussions afterwards with individual members of the public, which raised the awareness of the research being carried out here.
Year(s) Of Engagement Activity 2016
 
Description Midlothian Science Festival - November 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Purpose: To spread out the reach of science communication to the Midlothian area Description: Drop in gala day, then repeating the workshop 'Fantastic Plastic' in school - The children really enjoyed doing science and having visitors to the school. Introduced the idea of biodegradability to them, and made links with local schools. n addition, we took the opportunity to discuss our research and its impact with the general public, bringing awareness of the effect of global warming on the marine life, in particular coccolithophores, and how these organisms can be used as proxys to understand the effects of ocean acidification.
Year(s) Of Engagement Activity 2016