14 ERA-CAPS. EVOREPRO. Evolution of Sexual Reproduction in Plants

Lead Research Organisation: University of Leicester
Department Name: Biology

Abstract

The economic importance of seed plants cannot be overstated, as they are our main sources of food, fibre and other industrial raw materials. However, our capacity to generate sufficient food, animal feed and energy is increasingly compromised by human population expansion, competition for land use, rapid biodiversity loss and predicted global climate change. The process of sexual reproduction in higher plants is of particular importance for the aim of increasing crop yields, overcoming hybridization barriers and selecting and fixing quality traits. Before we can develop tools to manipulate plant reproduction in our favour we must achieve a deeper understanding of the basic mechanisms underlying gamete development and double fertilization mechanisms in angiosperms.

The project will deliver the first comprehensive view of the molecular evolution of plant sexual reproduction and will provide insights into the origins of double fertilization in flowering plants. In addition, gene expression data and the networks generated will be valuable in understanding the evolution of biological pathways and gene function prediction beyond the focus on reproduction in this project. In parallel, the work on crop species will identify genes useful to the agricultural industry to enable precision control of plant reproduction, to overcome hybridization barriers and to promote better breeding schemes by improving hybrid seed production.

Technical Summary

Research during the past five years has delivered tremendous new insights into gamete physiology and the mechanisms involved in fertilization in Arabidopsis. This progress has established the view that gametes are hyper-differentiated cell types with highly specific transcriptional profiles. Importantly, we lack any knowledge on the origin of mechanisms that predate double fertilization. Here, we propose to use emerging models, representing key stages in plant evolution, to provide insight into the ancestral mechanisms of gamete differentiation and fertilization. We will establish gene co-function networks for the liverwort Marchantia, the moss Physcomitrella and the extant basal flowering plant Amborella. These will be complemented with co-function networks from Arabidopsis and the important crops maize, tomato and rice. These networks will be used to study the conservation of gene co-function networks governing male and female gametogenesis, pollen tube growth and fertilization mechanisms in flowering plants. Moreover, these investigations will provide novel molecular markers of fertility in crops. We will also directly test the function of established regulators required for male gamete development, as well as those newly identified from our network analyses.The expected findings will allow the identification of mechanisms targeted by environmental stresses during sexual reproduction in crops and will assist in the selection of stress-resistant cultivars. The reprogramming of chromatin modifications is an established feature of sexual reproduction in animals and data generated in this project will provide the first comprehensive map of the occurrence of chromatin reprogramming in plant gametes and fertilization products. In summary, the outputs of the EVOREPRO project will provide a deeper understanding of the evolution of sexual reproduction of econonomically important plant species.

Planned Impact

Blank

Publications

10 25 50
 
Description In current work in collaboration with researchers in Japan (Araki) and Austria (Berger), which has now been published in Nature Communications, we have discovered that the MYB transcription factor DUO1, which is essential for male fertility and gamete development in flowering plants is also essential for sperm differentiation in the basal land plant Marchantia polymorpha. This work describes how sexual reproduction evolved from a fusion between similar (isomorphic) gamete types to fertilisation of large eggs by small motile sperms, which is poorly understood. In algal ancestors of land plants, changes in the DNA-binding domain of the DUO1 precursor allowed recognition of a new target DNA sequence. This event led to the emergence of a distinct DUO1-controlled network dedicated to the differentiation of small motile sperm. We propose that the emergence of DUO1 initiated the evolution of gamete dimorphism, eventually leading to the complex modes of sexual reproduction in the land plant lineage.
Exploitation Route Our findings have important implications for crop breeding and hybrid seed production. Male sterility is an attractive tool for hybrid seed production, however, current methods have certain drawbacks, which limits exploitation of male sterility in breeding programs. Identification of a conserved transcription factor that control male fertility could be a great asset for breeders and the sustainable intensification of crop yields.
Sectors Agriculture, Food and Drink

URL https://le.ac.uk/news/2018/december/19-breakthrough-study-origin-plant-sperm
 
Description The methodology and results from our work was used to inform the development of an outreach activity delivered to year 9 (>600 students over 2 days) high school students. The purpose was to educate them about gene transfer methods used in our research programme that are used to discover the function and origin of genes including those such as DUO1 that play a critical role in crop fertility.
First Year Of Impact 2016
Sector Education
Impact Types Societal

 
Description BBSRC International Partnering Award
Amount £42,556 (GBP)
Funding ID BB/P02601X/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 10/2017 
End 09/2021
 
Title CoNekT a platform dedicated to the visualization and analysis of plant co-expression and co-function networks. 
Description CoNekT (Co-expression Network Toolkit), an open source web server, that contains user-friendly tools and interactive visualizations for comparative analyses of gene expression data and co-expression networks. These tools allow analysis and cross-species comparison of (i) gene expression profiles; (ii) co-expression networks; (iii) co-expressed clusters involved in specific biological processes; (iv) tissue-specific gene expression; and (v) expression profiles of gene families. CoNekT is constructed from data for a single species of green algae, for two species of bryophytes and for five flowering plant species (Chlamydomonas reinhardtii, Marchantia polymorpha, Physcomitrella patens, Amborella trichopoda, Arabidopsis thaliana, Oryza sativa, Solanum lycopersicum and Zea mays) providing a web-tool with a broad collection of plant phyla. Unique aspects of the database include recently acquired data for isolated male and female gametes from several species. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
Impact The data has been used by the EVOREPRO network members to explore conserved gene networks involved in plant reproduction and gamete development. 
URL https://evorepro.sbs.ntu.edu.sg/
 
Title CoNekT a platform dedicated to the visualization and analysis of plant co-expression and co-function networks. 
Description CoNekT (Co-expression Network Toolkit), an open source web server, that contains user-friendly tools and interactive visualizations for comparative analyses of gene expression data and co-expression networks. These tools allow analysis and cross-species comparison of (i) gene expression profiles; (ii) co-expression networks; (iii) co-expressed clusters involved in specific biological processes; (iv) tissue-specific gene expression; and (v) expression profiles of gene families. CoNekT-Plants supports data for green alga, seed plants and flowering plants (Picea abies, Chlamydomonas reinhardtii, Vitis vinifera, Arabidopsis thaliana, Oryza sativa, Zea mays and Solanum lycopersicum) and thus provide a web-tool with the broadest available collection of plant phyla. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact This has enabled phylogenetic comparisons of gene activity involved in plant reproduction by all groups in the EVOREPRO consortium. 
URL https://conekt.sbs.ntu.edu.sg/species/
 
Description Dynamic DNA (Leicester); Glowing genes in plants activity; 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact 600 year 9 pupils attended my newly designed activity "Glowing Genes in Plants" as part of "Dynamic DNA, a day of hands on activities at University of Leicester exploring DNA and genes and theirs impacts on society and science. My activity was designed a new activity to stimulate understanding of gene activity, development and reproduction in plants

Two schools asked and were supplied with methods and seeds to carry out the activity themselves as part of their plant biology curriculum.
Year(s) Of Engagement Activity 2013,2014,2015,2016,2017
URL http://www2.le.ac.uk/departments/genetics/genie/outreach/dynamic-dna
 
Description EVOREPRO Study Press Release 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Announcement of Award "University of Leicester involved in study of plant sperm cells. Study on the evolution of sexual reproduction in plants receives 2.6 million euros", 02 Jul 2015
Year(s) Of Engagement Activity 2015
 
Description Press Release on Nature Communications paper 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Announcement of major published finding as press release. "Breakthrough study uncovers origin of plant sperm", 19 Dec, 2018
Year(s) Of Engagement Activity 2018
URL https://le.ac.uk/news/2018/december/19-breakthrough-study-origin-plant-sperm