Neuronal Substrates of Perceptual Salience in the Auditory System

Lead Research Organisation: University College London
Department Name: Ear Institute

Abstract

You are standing in the midst of a departmental social event with a plastic cup of wine in your hand, idly thinking about your cat, while the sound of multiple ongoing conversations washes over you. Suddenly, you hear your name mentioned in one of those conversations, and what was formerly an indistinct hum of voices separates into background noise and a foreground conversation that now commands your full attention. How does this happen? How is perceptual salience represented in the auditory brain? How does auditory processing interact with behavioural state and attention to differentiate hearing from listening?

We have recently developed powerful new computational tools for addressing these questions, which have enabled us to analyse how the context in which a sound occurs affects the representation of that sound in the auditory brain. Using these novel tools, we have found that context-sensitive mechanisms in the auditory system implement, at a single-neuron level, well-known perceptual phenomena that describe how humans parse complex sounds into salient events. Therefore, these context-sensitive mechanisms may be the neuronal substrates of perceptual salience in the auditory system. We hypothesise that changes in these context-sensitive mechanisms underlie changes in perceptual salience during active listening - for example, when you suddenly realize that one individual voice in multiple ongoing conversations is talking about you.

We will test this hypothesis by recording the responses of auditory cortical, thalamic and midbrain neurons to complex sounds while animals are attending to auditory or visual cues in two different behavioral tasks. By comparing the context-dependence of neurons between brain areas, sensory attentional states, and behavioural tasks, we aim to determine how perceptual salience arises from interactions between attention and neuronal sensitivity to sound context. Ultimately, this work may not only reveal the neuronal substrates of perceptual salience in the auditory system, but also suggest new approaches to unsolved problems in machine listening -- such as how to extract the sound of an individual voice from multiple ongoing conversations.

Technical Summary

The ability to parse a complex sound into behaviourally important cues is critical to auditory perception. We have recently developed powerful new computational tools for analysing neuronal responses to complex sounds, which have revealed that context-sensitive mechanisms act to modulate the input gain of auditory neurons in a spectrotemporally localised manner. These mechanisms appear to implement, at a single-neuron level, psychophysical phenomena that have long been recognised as essential to defining how humans parse complex sounds into perceptually salient events. Here, we propose to combine the novel analytical tools developed in our previous work with state-of-the-art methods for large-scale electrophysiological recording and optogenetic manipulation of neuronal population activity in awake behaving mice, to define the contribution of context-sensitive mechanisms to active listening in awake animals. We hypothesise that: (1) context-sensitive mechanisms in auditory cortical, thalamic and midbrain neurons are strongly modulated by attentional state; (2) these attentional effects are more pronounced in cortical and thalamic neurons than in midbrain neurons; and (3) cortical mechanisms of contextual modulation play a crucial role in detection of sound-conjunction cues embedded in a complex background sound. To test these hypotheses, we will record responses of auditory cortical, thalamic and midbrain neurons to complex background sounds while animals are attending to auditory (sound-conjunction) or visual (control) cues in two different behavioural paradigms. By comparing context-dependence of neuronal responses between brain areas, sensory attentional states, and behavioural paradigms, we will determine how perceptual salience arises from interactions between attention and neuronal sensitivity to sound context. These investigations of the neuronal substrates of perceptual salience in the auditory system may also suggest new strategies for machine listening.

Planned Impact

This work has potential for short-term and medium-term impact on provision of skilled people to the workforce, and long-term impact on human welfare and quality of life.

In the short term, this project will contribute to the career development of the Researcher Co-I, Dr Arne Meyer. Through the research, Meyer will learn a wide range of state-of-the-art techniques in computational and systems neuroscience, including methods for large-scale in vivo electrophysiological recording in awake animals; behavioural testing in mice; optogenetic manipulation of neural circuitry; histological analysis; and mathematical modelling of neural data, including fundamental aspects of machine learning. He will also benefit from interaction with the diverse group of scientists at the UCL Ear Institute, the Gatsby Computational Neuroscience Unit, and also the new Sainsbury Wellcome Centre for Neural Circuits and Behaviour which is co-located with the Gatsby Unit. This research environment, at the interface between experimental and computational neuroscience, will provide Meyer with a uniquely interdisciplinary scientific profile, which will help him to develop his independent scientific career.

In the medium term, the project will contribute to advancement of science and technology education, through involvement of the PI, Co-I and Researcher Co-I in planned public engagement activities. Specifically, Linden will give guest lectures on brain mechanisms of sound perception to students at a comprehensive secondary school in London, and also we will offer one 8-week summer research internship per year to a student interested in science who is unlikely to have had any previous direct interactions with professional scientists. Through these planned yearly activities, we aim to increase awareness of professional scientists among economically and academically disadvantaged students; to provide role models to students interested in science; and ultimately to increase the number of students pursuing careers in science-related subjects.

In the long term, this research could have substantial impact on human welfare and quality of life. The overall goal of the proposed research is to reveal the neuronal substrates of perceptual salience in the auditory system. The ability to separate salient events from a stream of sounds, e.g., an individual voice from multiple ongoing conversations, is crucial to social interaction and therefore to quality of life. However, it is mostly this aspect of hearing that is impaired due to age-related hearing loss. Reliable separation of salient events from background sound is still an unsolved technical problem and therefore conventional hearing aids don't make it easy to distinguish meaningful signals such as speech from background noise. Insights gained from this project could suggest physiologically-inspired algorithms for automatic speech recognition in noisy environments - and indeed Meyer has already contributed to development of such algorithms in his PhD work. Improved algorithms for automatic recognition of speech and other important sounds in noisy environments could transform the lives of millions of people with age-related hearing loss in the UK alone. To take a concrete initial step toward this very long-term possible impact, we will aim to incorporate initial insights gained from this project into the physiologically-inspired algorithms for automatic speech recognition and auditory object detection that Meyer has studied previously.

Publications

10 25 50
 
Description We developed a miniature head-mounted camera system to enable detailed measurement of behavioural and neural data in freely moving mice. This new method enabled us to investigate questions about brain activity during natural behaviours while also advancing the 3Rs for animal welfare. This work was published in a major research paper (Meyer et al. 2018 Neuron).

Additionally, we have made two further discoveries in work conducted for this project: (1) sensitivity of auditory cortical neurons to the acoustic context in which a sound occurs is stable across many days of recording in awake mice and across multiple behavioural states, and (2) sensitivity of auditory cortical responses to behavioural context (e.g. changes in temporal expectation, arousal, etc) is less than expected based on previous literature. These findings form the basis for two manuscripts in preparation for imminent submission.
Exploitation Route At least 10 different laboratories around the world are making use of our new head-mounted camera technology, and it has been widely publicised on web sites devoted to open-source neuroscience and behavioural research. A publication on the technology appeared in Neuron: doi 10.1016/j.neuron.2018.09.020. Meanwhile our work on auditory cortical sensitivity to sound context has been presented in several talks and multiple conference presentations at multiple meetings, and forms the basis for two manuscripts in preparation. The results indicate that responses of auditory cortical neurons to sound conjunctions are more robust to changes in acoustic and behavioural context than previously thought.
Sectors Digital/Communication/Information Technologies (including Software),Education,Healthcare

URL http://www.open-ephys.org/mousecam
 
Title A head-mounted camera system for freely moving mice 
Description We developed a novel ultralight head-mounted camera system that can be used to track eye movements, pupil diameter, whisking movements and other behavioural variables in freely moving, exploring mice. This tool supports the 3Rs because it facilitates collection of higher quality behavioural data from mice than was previously accessible, and also because it can be used in freely moving (rather than head-fixed) animals. 
Type Of Material Physiological assessment or outcome measure 
Year Produced 2018 
Provided To Others? Yes  
Impact At least 10 labs worldwide have already adopted this technology. All design files and software are open-source and freely available. This research has been featured on www.openbehavior.com and www.open-ephys.org as an important open-source tool. The work is described in a publication: Meyer et al. (2018) Neuron 
URL http://www.gatsby.ucl.ac.uk/resources/mousecam
 
Title Open-Ephys 64-channel electrophysiology recording system 
Description We further developed and extended our custom-built acoustic startle response measurement rig to enable 64-channel multi-electrode electrophysiological recording. Like the original startle response measurement rig, this extended rig was constructed using open-source software (www.open-ephys.org) for maximum cost efficiency and flexibility, and is being used not only to conduct research for the funded project but also (when available) to conduct other auditory research at the Ear Institute. This facility is the first at the Ear Institute for in vivo electrophysiology in awake behaving mice. 
Type Of Material Improvements to research infrastructure 
Year Produced 2017 
Provided To Others? Yes  
Impact We have shared our knowledge of the open-ephys system and methods for in vivo recording in awake mice with other groups including Dr Nicholas Lesica's group at the UCL Ear Institute and Dr Daniel Bendor's group at the UCL Department of Experimental Psychology. 
 
Title A head-mounted camera for freely moving mice - control software 
Description Computer algorithms for collection and analysis of video data from a head-mounted camera for mice. 
Type Of Material Data handling & control 
Year Produced 2018 
Provided To Others? Yes  
Impact Method is already being adopted by at least 10 labs around the world. Software described in Meyer et al. (2018) Neuron 
URL http://www.gatsby.ucl.ac.uk/resources/mousecam
 
Description Collaboration with Professor John O'Keefe, UCL Department of Cell and Developmental Biology 
Organisation University College London
Department Department of Cell and Developmental Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution We have developed a novel device for measuring eye movements, pupil size and whisking movement in freely moving mice, which can be combined with multielectrode implants for recording from auditory or visual cortex in vivo.
Collaborator Contribution Professor O'Keefe has collaborated on this work, sharing his expertise in studies of behaviour in freely moving animals and also sharing access to research facilities.
Impact Publication: Meyer et al. (2018) Neuron Three conference abstracts: Poort et al. (2018) Society for Neuroscience Meeting; Meyer et al. (2018) Computational and Systems Neuroscience Meeting, Meyer et al. (2017) Integrated Systems Neuroscience Workshop
Start Year 2017
 
Title Offset-Enhancement as a Tool for Improving Auditory Temporal Acuity 
Description Based on discoveries from Linden Lab research on mice, we developed an algorithm that can be applied to sound signals to make it easier to hear rapid fluctuations in the sound (such as the sound fluctuations that characterise different consonant sounds). This algorithm ("offset-enhancement") increases the salience of sound offsets. Our data shows that it improves auditory temporal acuity and affects consonant perception in human listeners. We are also investigating the impact of this algorithm on intelligibility of speech signals in noise. We have implemented the algorithm both in Matlab and in Javascript. Our goal is to develop it as a possible signal-processing step in hearing aids or cochlear implants to improve the utility of these devices for the hearing impaired. 
Type Therapeutic Intervention - Psychological/Behavioural
Current Stage Of Development Refinement. Non-clinical
Year Development Stage Completed 2021
Development Status Actively seeking support
Impact We received a grant from the UCL Translational Acceleration Support Fund to develop this algorithm and perform pilot tests. A manuscript is in preparation and we are seeking further funding and industrial collaborations to pursue applications of the algorithm. 
 
Title Python software for monitoring behavioural state in freely moving mice 
Description We have developed Python code for monitoring behavioural state in freely moving mice, based on analysis of signals from a head-mounted accelerometer. 
Type Of Technology Software 
Year Produced 2017 
Impact Publication: Meyer et al. (2018) Neuron 
 
Description Article in British Society for Audiology Magazine "Audacity" 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact First author of article on discovery science research at the UCL Ear Institute, aimed at an audience of audiologists and audiology patients. Linden JF and Gale JE (2018) From cochlea to cortex and from cells to cognition: discovery research in hearing and deafness at the UCL Ear Institute. Audacity magazine (newsletter of the British Society for Audiology).
Year(s) Of Engagement Activity 2018
 
Description Invited speaker on Cajal Course in Computational Neuroscience 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Invited lecturer in intensive 3-week computational neuroscience course that is run by the Federation of European Neuroscience Societies and attracts students from all over the world.
Year(s) Of Engagement Activity 2015,2016,2017,2018,2019