Effect of motor control on sensory coding in the awake, behaving mouse

Lead Research Organisation: University of Manchester
Department Name: School of Biological Sciences

Abstract

Our knowledge of the neural mechanisms of sensation comes mainly from a passive experimental paradigm where sensory stimuli are presented to the immobilised sense organ of an anaesthetised animal (e.g., spot of light projected on the retina). However, most species actively seek information by coordinating motor control of their sense organs (e.g., eyes, hands, whiskers) with sensory processing ('active sensing'). Indeed, the activity of sensory receptors can be strongly affected by sense organ movements: if eye movement is abolished, the visual image fades away. The concern that motor control might have an important impact on sensory coding was difficult to address fully in the past due to technical limitations.

Analogously to the way that humans use motor control to explore objects by movement of our hands and eyes, rodents explore their environment by rhythmically sweeping their whiskers backwards and forwards ('whisking'). The whisker sense is extremely important to these animals: it dominates the brain's somatosensory areas. The whisker sense of rats/mice offers an excellent model system to get insight into the central question of this proposal - how sensory mechanisms depend on motor control. How the whiskers move and interact with objects can now be precisely measured using high-speed video cameras. Moreover, since engineers have long been interested in how rod-like objects bend, there is a well-developed mathematical theory that can be used to estimate the mechanical forces of whisker-object interaction from video data.

The way that we perceive the world is fundamentally constrained by primary sensory neurons, which translate signals in the environment (such as bending of a whisker) into corresponding patterns of action potentials. Here, we propose to determine the tactile features that primary whisker neurons encode as a mouse actively explores objects with its whiskers. The significance of the work is that it will provide insight into the general question of how motor control (here, whisking) and sensory processing interact to constrain how we perceive the world.

Technical Summary

To determine how sensory coding interacts with motor control, it is valuable to record the activity of primary sensory neurons in awake animals, whilst at the same time measuring the input to the (moving) sense organ. The Petersen lab recently published the first study to do this in the whisker system (Campagner et al, 2016; Elife).

To address objectives O1-O3, we will train head-fixed mice to perform a go/no-go object localisation task. The object (textured pole) will be positioned in either go or no-go location. The mouse will be rewarded for licking on go trials and punished for licking on no-go trials. High speed cameras will be used to measure both whisker movement and whisker-pole interaction. Simultaneously, we will use microelectrode arrays implanted in the trigeminal ganglion to record the activity of primary whisker neurons. Computer vision algorithms, developed by the PI, will be used to extract tactile features (e.g., whisker angle/curvature, stick-slip events) from the imaging data. Machine-learning algorithms (Generalised Linear Models) will then be used to assess how well each feature predicts neuronal activity.

To measure 3D whisker movements and 3D whisker-object interactions (O2), we will use two, calibrated high speed cameras (horizontal and coronal views). A 3D computer vision algorithm will be used to extract 3D tactile features (e.g., whisker curvature in horizontal/coronal planes).

To selectively record from PWNs that innervate Merkel cells (O3), we will use an optogenetic strategy. We have identified two lines of Cre mice (CCK-Cre and K14-Cre) where, within the whisker follicle, Cre recombinase is selectively expressed in Merkel cells. In preliminary work, we have crossed these mice with Ai32 mice that express ChannelRhodopsin-2 (ChR2) in a Cre-dependent manner, to obtain mice that express ChR2 in Merkel cells. We will identify these Merkel-PWNs by testing whether they respond to transcutaneous delivery of blue (473 nm) light.

Planned Impact

This is a basic research proposal. In the short term, the expected outcome from this research is insight into the mechanisms of sensation in peripheral sensory nerves and, in particular, into mechanisms of sensation in the whisker system. In the long term, these advances have potential impact on (1) diseases of the peripheral nerves and (2) tactile sensory systems for robotics. Here, and in the pathways to impact document, we map out a pathway to translate outcomes from this project into impact in these two areas.

(1) Disease of peripheral nerve. In order to realise this impact, we are focussing on a major peripheral nerve disease - diabetic neuropathy. The present project can achieve impact through application of the sophisticated methods we are developing for studying sensory coding in the whisker system to animal models of diabetes. My vision is that application of our methods will lead to a better understanding of disease mechanisms, and thereby facilitate the development of improved therapies, solidly rooted in basic science. To this end, RP's group started a collaboration on diabetic neuropathy, with Manchester diabetes expert, Dr. Natalie Gardiner, to study the effect of streptozotocin-induced diabetes on whisker neuron function. An significant impact milestone was recently achieved in that we recently published the first results of our collaboration (Freeman et al, 2016). The next step is to apply for translational funding to pursue our collaboration, by applying state of the art behavioural monitoring and awake electrophysiological recording methods, developed in the present proposal, to the study of nerve function in diabetic rodents.

(2) Tactile sensory systems for robots. There is substantial commercial interest in developing robots with human-like abilities to manipulate objects through touch, with tactile sensors being developed, for example by SynTouch and Tekscan. The potential applications include surgical robots and prosthetic hands. However, current devices are incredibly crude compared to primate hands or rodent whiskers. The impact potential here is that insight into the mechanisms of active touch could stimulate the development of more sophisticated and more effective technology robotic devices. My vision is that improved understanding of mechanisms of active touch from the present project will impact first on companies developing artificial touch technology, and, as those companies' products improve, consequently on a wide range of markets. I have existing links with the UK academic roboticists who have pioneered tactile robots, including whisker-driven ones (Sheffield, Bristol), but this has yet to translate into genuine collaboration. The next step on the pathway to impact is to network in the most effective possible way with roboticist researchers and robotics companies and to develop collaborations.

Due to its multi-disciplinary character, involving not only in vivo experiment but also computational modelling, the proposed project offers exceptional training potential for the PDRA and technician.

References
OJ Freeman, MH Evans, GJS Cooper, RS Petersen, NJ Gardiner (2016) Thalamic amplification of sensory input in experimental diabetes. European Journal of Neuroscience. DOI 10.1111/ejn.13267.

Publications

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Campagner D (2018) What the whiskers tell the brain. in Neuroscience

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Campagner D (2019) Prediction of Choice from Competing Mechanosensory and Choice-Memory Cues during Active Tactile Decision Making. in The Journal of neuroscience : the official journal of the Society for Neuroscience

 
Description Our study shows that animal choices during active tactile decision making can be predicted from mechanosenory and choice-memory signals; and provides a new task, well-suited for future study of the neural basis of active perceptual decisions. Published as Campagner et al (2019).

Our work has led to development of a new software method (detailed on this site). Briefly, A system for tracking whisker kinematics and whisker shape in three dimensions. Published as Petersen et al (2020).

Our work has shown that sensory adaptation operates in awake, behaving brain
Exploitation Route Provides a new task, well-suited for future study of the neural basis of active perceptual decisions.
Provides new 3D whisker tracking method making new long-standing research quesitons now feasible to investigate.
Sectors Digital/Communication/Information Technologies (including Software),Electronics

 
Description Effect of motor control on sensory coding in the awake, freely moving mouse
Amount £509,815 (GBP)
Funding ID BB/V009680/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 04/2021 
End 03/2024
 
Title 3D whisker tracker 
Description Machine learning method for tracking mouse whiskers from video data in 3D 
Type Of Material Technology assay or reagent 
Year Produced 2020 
Provided To Others? Yes  
Impact Our innovation here is to extract 3D information about whiskers using a two-camera, high-speed imaging system and to develop computational methods to reconstruct 3D whisker state from the imaging data. Our hope is that this study will facilitate comprehensive, 3D analysis of whisker behaviour and, more generally, contribute new insight into brain mechanisms of perception and behaviour. 
URL https://github.com/PetersenLab/WhiskerMan
 
Title A system for tracking whisker kinematics and whisker shape in three dimensions 
Description Here, we developed a high-speed imaging system that measures whisker movements simultaneously from two vantage points. We developed a whisker tracker algorithm that automatically reconstructs 3D whisker information directly from the 'stereo' video data. The tracker is controlled via a Graphical User Interface that also allows user-friendly curation. The algorithm tracks whiskers, by fitting a 3D Bezier curve to the basal section of each target whisker. By using prior knowledge of natural whisker motion and natural whisker shape to constrain the fits and by minimising the number of fitted parameters, the algorithm is able to track multiple whiskers in parallel with low error rate. 
Type Of Technology Software 
Year Produced 2020 
Open Source License? Yes  
Impact We used the output of the tracker to produce a 3D description of each tracked whisker, including its 3D orientation and 3D shape, as well as bending-related mechanical force. In conclusion, we present a non-invasive, automatic system to track whiskers in 3D from high-speed video, creating the opportunity for comprehensive 3D analysis of sensorimotor behaviour and its neural basis. 
URL https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1007402
 
Description British Science Week Science Extravaganza 2019 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact . The main aim of this programme of activities is to enthuse and inspire young people about science, technology, engineering and maths and increase their desire to study it to A-level and beyond.
Year(s) Of Engagement Activity 2019