Biopesticides for Africa: A model system

Lead Research Organisation: Lancaster University
Department Name: Lancaster Environment Centre

Abstract

African agriculture is impacted by a range of stresses leading to losses in yield, of which insect crop pests are a major problem. It has been estimated that agricultural crop pests account for around a 30% loss of crops grown globally. Conventional chemical pesticides are highly effective at protecting such crops, but are generally expensive and in Tanzania, for example, more than 70% of farmers cannot afford them. It is a similar story throughout most of sub-Saharan Africa. In addition to the problems with cost, those farmers who can afford them risk exposing themselves to harmful chemicals due to a lack of appropriate safety gear. Moreover, many chemical pesticides harm beneficial insects such as pollinators, livestock and the wider environment; in Europe this has resulted in a drastic reduction in the number of chemical products allowed in crop protection over the last two decades.

Both globally and across Africa in particular, there is a pressing need to develop cheaper, environment-friendly alternatives to chemical pesticides, and this is the focus of our project. Biological pesticides used to protect agricultural crops are derived from plants and microorganisms, such as fungi, bacteria, and viruses. They are often much cheaper to develop than new chemicals and, currently, global sales of biopesticides are estimated to be worth $2.3 billion, around 5% of the overall pesticides market and growing at around 16% per annum.

The long-term goal of our proposed study is to develop a novel, cheap, effective and locally-produced biopesticide in Tanzania (known as SpexNPV) to combat the one of the most infamous insect pests in sub-Saharan Africa. This pest is the caterpillar stage of the African armyworm moth (Spodoptera exempta). The product will be derived from a naturally-occurring virus, which is ever-present in natural populations of the armyworm in small amounts. Whilst our proposal necessarily addresses issues that are specific to the armyworm-SpexNPV system, this can better be viewed as a model system for understanding generic technical and production issues associated with the mass-production, mass-application and formulation of novel biopesticides, especially in Africa.

The overall objective of the proposed study is to use a specific host-biopesticide system (African armyworm-SpexNPV baculovirus) as a model for exploring some of the key issues associated with developing and deploying a new biopesticide in Africa. We will do so by better understanding the process of developing and applying the biopesticide. Specifically, we will test to see what impact application of the biopesticide has upon the target insect (e.g. will it develop resistance to the pesticide over time?), its gut microbial community (e.g. does this protect or harm its host?) and the effectiveness of the biopesticide itself (does it evolve undesirable traits over time?), and the potential to utilise this knowledge to develop novel biocontrol strategies (e.g. can we design novel combinations of viruses and bacteria to make the biopesticide more effective and cheaper?).

Technical Summary

Food security in sub-Saharan Africa is impacted by a range of stresses leading to losses in crop yield, of which insect pests are a major contributor. Whilst chemical pesticides are highly effective at protecting such crops, they are generally prohibitively expensive to the smallholder. The objective of this study is to use a specific host-biopesticide system (Spodoptera exempta-SpexNPV baculovirus) as a model for exploring the key issues associated with developing and deploying a new biopesticide in Africa.

Firstly, we will establish whether continual 'field production' of biopesticide will lead to selection for undesirable biopesticide traits. Specifically, whether the genetic and phenotypic profile of SpexNPV changes following host selection. This will be tested using both field trials in Africa and laboratory bioassays in the UK, in which the genetic and phenotypic traits of the virus will be quantified pre- and post-selection. Secondly, we will test whether mass-inundation of biopesticide is likely to select for a more resistant host population. Specifically, will controlling the armyworm pest population with SpexNPV inadvertently select for resistant, or generally more vigorous, insects? And thirdly, does the gut microbiota of the host influence susceptibility to the biopesticide and can this be manipulated to improve biopesticide efficacy? For example, are there resident microbes that influence S. exempta susceptibility to viral disease, or can we combine SpexNPV with other microbes to make armyworms more susceptible to infection? Laboratory trials will be undertaken testing gut microbiota faecal transplants between susceptible and resistant hosts to compare host genetic and microbiome effects, as well as exploring the possibility that specific gut bacteria modulate host susceptibility to baculoviruses. Ultimately, this project will answer key questions regarding the development and application of field-based, mass-production techniques for biopesticides.

Planned Impact

A major contributor to poverty in sub-Saharan Africa is the inability to produce sufficient food for a growing population, due partly to crop losses caused by insect pests. Most smallholder farmers cannot access expensive imported chemical pesticides, and where these are used they risk having damaging effects on the health of humans, beneficial insects, livestock and the wider environment. Biopesticides derived from microbial pathogens of insects could provide a lower-cost, environment-friendly solution for the control of crop pests by these farmers. The proposed study will address key issues in the production and use of biopesticides in Africa, and could have significant long-term impact.

The main beneficiaries of this research are likely to be the following:

BIOPESTICIDES INDUSTRY: Around a half of current chemical pesticides used in Europe will soon be banned due to environmental concerns. As a result, there is renewed interest in biopesticides in the EU and indeed globally. The research proposed here focusses on the interaction between the African armyworm and SpexNPV, a baculovirus we are developing as a biopesticide in Africa in collaboration with a Tanzanian SME, Crop Bioscience Solutions Ltd., who will be an immediate beneficiary of this research. Outputs from the proposed activities will feed directly into this biopesticides research programme by providing new insights into the long-term consequences of biopesticide field-production and mass-application. By understanding these challenges and opportunities, we hope to develop 'smarter' strategies for their use. For example, we envisage it might be possible to combine the SpexNPV-biopesticide with bacteria to enhance its efficacy against the pest, taking advantage of a previously identified interaction between armyworms, SpexNPV and a bacterial endosymbiont called Wolbachia: armyworms carrying Wolbachia are up to 14 times more susceptible to SpexNPV than those that are not. If similar interactions are observed with other bacteria, then this could be developed as a novel biopesticide 'combination' formulation for the control of African armyworms. And if similar interactions occur between other pest-virus-bacteria interactions then other novel biopesticides may also be developed.

FOOD PRODUCERS: Insect crop pests pose a major threat to global food security. The proposed research will contribute to our understanding of insect pest outbreaks and their control using biological biopesticides. In particular, it will provide us with a greater understanding of the factors that might limit the success of biopesticides, such as the evolution of host resistance, the effects of microbial symbionts, and virus virulence effects.

AGRICULTURAL COMMUNITIES IN AFRICA: Our previous research has already generated some important new findings (e.g. genetic and phenotypic diversity of the baculovirus and its epidemiology in natural armyworm outbreaks), and has resulted in the building of a biopesticide production facility in Tanzania, managed by project collaborator Crop Bioscience Solutions Ltd. Throughout this process, we have built capacity in biopesticide production and application via engagement with government, private sector and universities. In December 2013, PI Wilson met with the Vice-President of Zambia to advise on the control of African armyworm following a major food crisis caused by the pest, demonstrating that this research is likely to have impact at the highest levels in Africa. The proposed project would maintain these existing channels of communication and establish new ones, especially with the academic community in Africa via new links with the Nelson Mandela African Institution for Science and Technology (NM-AIST). Our impact plan includes a 'biopesticides' workshop specifically targeted at young scientists in Tanzania, in the hope of inspiring the next generation of biopesticide innovators in the region.

Publications

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Antwis RE (2017) Fifty important research questions in microbial ecology. in FEMS microbiology ecology

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Wilson K (2021) Trans-generational viral transmission and immune priming are dose-dependent. in The Journal of animal ecology

 
Description We have shown that there is considerable genetic variation in the the virus we have been developing as a biopesticide for the control of a crop pest in Africa and that the proposed strategy for local mass production of the virus will need to put practices in place to prevent the evolution of the virus, which could limit its potential efficacy.

We have sequenced the entire genomes of 40 of these virus isolates and are currently looking to establish how virus genotype determines its phenotype (i.e. how quickly it kills the pest insect, how virulent it is and how productive it is). There is also evidence for seasonal directional selection favouring some genotypes over others. This may have implications for the future development of this biopesticide and others if we can identify key genes.

We are in the process of quantifying genetic variation in the pest insect which could result in the evolution of resistance to the biopesticide.

We have determined that the potential efficacy of the biopesticide is also influenced by the presence of other viruses and bacteria in the insect. This helps to explain some of the variation we have observed in field trials of the biopesticide.

The biopesticides workshop we held in Arusha, Tanzania, was extremely successful in inspiring the next generation of researchers and policy makers to develop and utilise safer biological pesticides as alternatives to chemical pesticides.
Exploitation Route The research will likely impact the future development of biopesticides, especially in Africa.

Additional GCRF cluster funding has been secured to take this work further in Africa (ongoing).
Sectors Agriculture, Food and Drink

 
Description Our research has fed into the UN-FAO's policy guidelines for the management of an invasive crop pest species in Africa and Asia - the fall armyworm, with the use of biological pesticides now seen as a key plank in the control of the pest, so contributing to food security and reducing the impact of damaging chemicals on biodiversity and human health. The work has not directly led to an economic impact for the DAC country involved (Tanzania) but our workshop, which was gender balanced, has helped to inspire the next generation of researchers to develop and use safer biological alternatives to chemical pesticides.
First Year Of Impact 2018
Sector Agriculture, Food and Drink
Impact Types Policy & public services

 
Description Leader of the United Nations Food & Agriculture Organisation's Biopesticides Technical Working Group
Geographic Reach Multiple continents/international 
Policy Influence Type Participation in a guidance/advisory committee
Impact As leader of the United Nations Food & Agriculture Organisation's (UN-FAO) Biopesticides Technical Working Group for Invasive Fall Armyworm, I have played a key role in advocating the use of environmentally-friendly biological pesticides for the management of a globally important invasive crop pest, as part of an integrated pest management strategy.
URL http://www.fao.org/3/ca9771en/ca9771en.pdf
 
Description Global Challenges Research Fund
Amount £637,889 (GBP)
Funding ID BB/PO23444/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 05/2017 
End 12/2019
 
Description Newton International Fellowship Scheme
Amount £66,000 (GBP)
Funding ID NF161146 
Organisation Newton Fund 
Sector Public
Country United Kingdom
Start 02/2017 
End 01/2019
 
Description Scaling up biocontrol innovations in Africa
Amount £127,663 (GBP)
Funding ID EP/T024410/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 06/2020 
End 05/2021
 
Title Trans-generational viral transmission and immune priming are dose-dependent 
Description It is becoming increasingly apparent that trans-generational immune priming (i.e. the transfer of the parental immunological experience to its progeny resulting in offspring protection from pathogens that persist across generations) is a common phenomenon not only in vertebrates, but also invertebrates. Likewise, it is known that covert pathogenic infections may become 'triggered' into an overt infection by various stimuli, including exposure to heterologous infections. Yet rarely have both phenomena been explored in parallel. Using as a model system the African armyworm (Spodoptera exempta), an eruptive agricultural pest, and its endemic dsDNA virus (Spodoptera exempta nucleopolyhedrovirus, SpexNPV), the aim of this study was to explore the impact of parental inoculating-dose on trans-generational pathogen transmission and immune priming (in its broadest sense). Larvae were orally-challenged with one of five doses of SpexNPV and survivors from these treatments were mated and their offspring monitored for viral mortality. Offspring from parents challenged with low viral doses showed evidence of 'immune priming' (i.e. enhanced survival following SpexNPV challenge); in contrast, offspring from parents challenged with higher viral doses exhibited greater susceptibility to viral challenge. Most offspring larvae died of the virus they were orally-challenged with; in contrast, most offspring from parents that had been challenged with the highest doses were killed by the vertically-transmitted virus (90%) and not the challenge virus. These results demonstrate that the outcome of a potentially lethal virus challenge is critically dependent on the level of exposure to virus in the parental generation - either increasing resistance at very low parental viral doses (consistent with trans-generational immune-priming) or increasing susceptibility at higher parental doses (consistent with virus triggering). We discuss the implications of these findings for understanding both natural epizootics of baculoviruses and for using them as biological control agents. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
URL http://datadryad.org/stash/dataset/doi:10.5061/dryad.qjq2bvqft
 
Description Collaboration with the Chinese Academy of Agricultural Sciences 
Organisation Chinese Academy of Agricultural Sciences
Country China 
Sector Academic/University 
PI Contribution We have collaborated extensively on research projects that have yield a number of recent publications, providing intellectual contributions and hosting visitors and Fellows from CAAS.
Collaborator Contribution They have provided access to staff and data and provided intellectual input and technical expertise.
Impact This collaboration has resulted in 5+ research papers, as well as a CAAS scientist successfully applying for a 2-year Newton International Fellowship, as well as several other short-term visitors.
Start Year 2014
 
Description 4 Day Biological Control Agents Workshop for Tanzanian students/staff in Arusha 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Around 25 local postgraduate students, staff, practitioners and policy members attended a 4 day workshop in Arusha, Tanzania, to learn about and discuss the production and use of biological control agents to control insect crop pests and disease vectors. The workshop was extremely well received and sparked lots of discussion and praise from the workshop delegates and local host organisation.
Year(s) Of Engagement Activity 2019
 
Description Blog post for Global Food Security 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact The blog was an update of a previous blog I wrote about biopesticides and armyworms in Africa, targeted primarily at interested non-experts. The post was commented on by a number of the public, both directly and via email, as well as several international companies, leading to potential collaborations, and the press.
Year(s) Of Engagement Activity 2017
URL http://www.foodsecurity.ac.uk/blog/2017/01/natural-killers-developing-better-biopesticides/
 
Description Management of Fall armyworm in Africa 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact I engaged with a number of international workshops in Africa (Zimbabwe, Kenya, Ghana) and Europe (Italy), as well as numerous teleconferences and discussion groups, to develop strategies for the monitoring and management of an invasive pest in Africa - the Fall armyworm. This resulted in the production of a field manual for resource-poor farmers via Farmer Field Schools in Africa (http://www.fao.org/3/I8665EN/i8665en.pdf) and wider discussions with government officials and biopesticide producers.
Year(s) Of Engagement Activity 2017,2018
URL http://www.fao.org/news/story/en/item/1100355/icode/
 
Description Media engagement about the Fall armyworm crisis in Africa 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I gave numerous interviews to the press (x10+), radio (BBC World Service, BBC Science in Action, Radio France International, Radio Zimbabwe) and TV (Al Jazeera [https://goo.gl/fYrh41], BBC Newsround [https://goo.gl/TKHajU], Islam.tv [https://youtu.be/8b3VcAZ_6dY]) about the invasive Fall armyworms in Africa, based on my research on African armyworms in Africa and research on Fall armyworms (and invasive Old World Bollworm) in Brazil and the UK. I also wrote a piece for the Conversation (https://theconversation.com/armyworms-are-wreaking-havoc-in-southern-africa-why-its-a-big-deal-72822). This sparked significant media and public interest, as well as invitations to speak to the UN FAO meeting in Harare, Zimbabwe, and to write a briefing note and advise DFID on the crisis.
Year(s) Of Engagement Activity 2017
URL https://goo.gl/fYrh41
 
Description Webinar for UN-FAO on biopesticides 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact >150 attendees live from >40 countries globally on the use of pesticides and biopesticides for the control of fall armyworms, with Q&A session
Year(s) Of Engagement Activity 2020
URL http://www.fao.org/fall-armyworm/education/webinars/en/