Brain pathways for visually-guided defence behaviours

Lead Research Organisation: University College London
Department Name: Experimental Psychology

Abstract

Much of our daily lives, and those of other animals, involves reacting instinctively to events. For example if we see a snake while we are walking in the forest we either freeze or escape. In this project we aim to understand the brain pathways that allow the selection and execution of these instinctive behaviours in animals. Because these pathways emerge early in development, and are shared by humans and other animals, distinguishing the roles of older ("primitive") pathways can be of broad relevance for understanding brain function.

The instinctive reaction to freeze or to escape in the presence of a potential threat is called a defence behaviour. These defence behaviours are not panic. For example, analyses of evacuations during fires show that people do not run randomly but return the way they came. Similarly, animals running away from a potential threat do not run randomly, but straight to a place of refuge if it is available. We have recently discovered that rodents, like humans, use vision to guide their selection of defence behaviour. We found that simply manipulating the visual stimulus that is presented to animals guided them to freeze or escape.

In this project we will use this simple visual manipulation to understand how signals from the eye are used to guide defence behaviours in rodents. We will test the hypothesis that both threat discrimination and defence behaviour are supported by a small area of the mid-brain called the superior colliculus. We will establish how outputs of the eye reach this brain area, how those signals are analysed, and how they are transformed into behavioural outputs. We will test the hypothesis that this brain area works with other navigational guidance systems in the brain to guide behaviour and enable escape to a safe place of refuge. The final outcome will shed light on how the brain links vision to action, in a system likely common to all mammals.

The project is important because evolutionary older pathways are likely to have preserved function in humans, especially for rapid, instinctive behaviours, and may be particularly important in visual functions following cerebral stroke or neonatal brain injury. As well as providing fundamental knowledge about how brains support normal behaviour, the proposed study may therefore shed light on why some visually-guided behaviours are possible in people lacking conscious vision - a phenomenon often known as blindsight. It may also guide the development of interfaces or autonomous devices that need to interact with biological organisms. Finally, it may help the design of the built environment to be informed by an understanding of how we interact with the world in the presence of potential threats.

Technical Summary

The aim of this project is to discover how the brain uses vision to guide defence behaviours, a vital set of behaviours that are shared across many species. Defence behaviours are thought to depend on circuits through the mid-brain superior colliculus (SC), but how these circuits discriminate potential threats and organise subsequent behaviour is not known.

We have recently discovered that rodents choose to freeze or escape depending on the nature of a threatening visual stimulus: a small disc moving overhead ('sweep') causes mice to freeze; an expanding disc ('loom') causes mice to rapidly escape to refuge. Our discovery suggests that subcortical circuits are capable of organising a simple sensorimotor transformation - converting vision (sweep vs. loom) into different defence behaviours (freeze vs. escape).

Our specific hypotheses are:
1. Visually-guided escape and freeze can occur independently of cortical vision.
2. Sweep and loom visual stimuli are differentially encoded by sensory pathways in the SC.
3. The SC interacts with navigational guidance systems to direct escape in the direction of a refuge.
4. Neurons in SC link the visual stimuli to both escape and freezing.

We will use behavioural measurements, causal interventions, and measurements of neural activity at key points in the circuit that links visual sensory signals to defence behaviour. The major outcomes are as follows. First, if defence behaviours do not require visual cortical pathways, then this specifies a subcortical circuit. Second, if circuits in SC link different visual stimuli to different behaviours, then this defines a sensorimotor transformation for a behaviour that is conserved across many species. Third, if finding refuge requires guidance systems in the brain, then this implicates the SC in cognitive as well as reflex behaviours. These findings will therefore take us a significant step forward towards understanding how ancient visual pathways guide behaviour.

Planned Impact

Academic impact:
Our approach brings together sensory, behavioural and navigational disciplines that have previously had little connection, and therefore offers to be of substantial interest to a large proportion of the neuroscience community. We expect that it is therefore likely to be the subject of invited talks at leading international institutions, for the researcher as well as the primary and co-investigators. To ensure that the proposed work has the widest possible academic impact, we have requested funds to present it at the leading international conferences. In addition, at the end of Year 2 we plan to organise a symposium that brings together research in related fields of conscious and unconscious visual processing, technology, urban design and navigation research. This symposium would aim to disseminate work related to instinctive behaviour to an audience that could find wider applications of the behavioural paradigms.

Societal impact:
Understanding how instinctive behaviours are guided is of clear potential importance to the design of transport, care homes and other public spaces. Because these behaviours recruit ancient subsystems of the mammalian brain, the proposed research offers potential insight into how the brain's alert systems are used to guide behaviour, including whether real threats drive escape or freeze, in humans as well as animals. Academic studies of escape dynamics are already used to inform the design of public spaces, but there has been little assimilation with contemporary neuroscience. To encourage a multi-disciplinary approach with real potential impact on urban design, our proposal includes pathways to collaboration and debate with urban environmental designers and relevant regulatory bodies. In addition, the behavioural experiments are straightforward in design and analysis, and they therefore offer an experimental entry point for undergraduate students. Indeed, a co-author of the paper reporting our initial discovery was a third-year undergraduate student in the psychology programme. By helping us engage with future students in a similar way, this proposal would facilitate understanding of animal experiments among our large undergraduate programme.

Economic and technological impact:
The proposed research offers a clear avenue to economic and technological impact. Recent advances in autonomous systems, including self-driving cars, bring digital and biological organisms into contact during potentially dangerous events. Knowledge of how instinctive escape or freeze behaviours are implemented in biological systems, and what information is used to inform their execution, may be incorporated into digital organisms to avoid escalation of danger to biological organisms, and potentially to reduce that danger. Pathways to developing commercial applications of this knowledge require interest from potential industrial partners. To do this we will start by working with a partner company, whose aim is to provide practical insight to organisations that wish to understand how people interact with the built environment, to translate our discoveries to human behaviours and explore their potential commercial implications.

Publications

10 25 50
 
Description The objectives of the project were to:
1) Establish if subcortical pathways are sufficient for defence behaviours.
2) Determine the sensory pathways for detection of visual stimuli in subcortical brain area superior colliculus (SC)
3) Determine the role of a directional sense in escape
4) Determine whether individual SC neurons encode visual stimuli and behaviour

Experimental measurements were made on all objectives, but the laboratory was closed from late March 2020 through to beginning of August 2020, and was then at 25% then 50% capacity until early 2021. We were very grateful for the additional 4 months of funding that was provided to complete the aims of this project. Yet publication of the results of these experiments has been substantially delayed as the PDRA employed on the project has had to move to a new position in Italy, and the write-up of the results has therefore been slower than anticipated. Nevertheless we are making good progress and expect to be able to submit three additional publications arising from this work over the next few months.

1) We have measured behaviour after making lesions in visual cortex to permanently disable it. We find that the behaviours are preserved, therefore subcortical pathways are sufficient for execution of the behaviours. We find, however, that there is a role for visual cortex in linking appropriate action to appropriate visual stimuli. This suggests that visual cortex is not necessary for detecting a visual stimulus, but has a role in defining the appropriate action in response to that visual stimulus. We followed this up with measurements while reversibly inactivating visual cortex using DREADDs. These experiments further suggest that visual cortex is not required for the detection of visual threats or execution of subsequent behaviours. In addition, we have leveraged a large dataset of defence responses acquired as part of a collaboration with researchers at the Institute of Ophthalmology at UCL, in which we have been able to use machine-learning on videos of mouse behaviour to define more subtle aspects of defence behaviour, including head turns. These measurements reveal that head-turns are ultra-rapid detection events that precede subsequent freeze and flight responses, or a return to ongoing behaviour and therefore suggest that there is a dissociation between 'turning', 'freeze' and 'escape' circuitry in subcortical areas. We have developed these observations into what we believe is a powerful new model for understanding organisation of subcortical circuits (Wheatcroft et al.), now accepted for publication in Frontiers in Neural Circuits. We have followed up a key behavioural prediction of this model, which is that the response to threats depends on where they are relative to the animal (in the upper or lower field) and find strong evidence for this prediction. We are currently writing these results up.

2) Using an intersectional viral approach and calcium imaging we have now measured the response properties of neurons in two of the pathways through SC (one that conveys signals to the thalamus, that may allow freezing behaviour, and one to the periaqueductal grey, that may allow escape behaviour). We find that neurons in both pathways are sensitive to both slowly moving stimuli, that normally evoke freezing behaviour, and fast-moving looming stimuli, that normally evoke flight behaviour. These data therefore suggest that the choice of freezing or escape behaviour relies on comparison, or gating, of the sensory signals in different pathways that leave the SC, rather than specialised sensory properties of those neurones. We are at the final stages of writing up these observations and expect to submit them for consideration in the next couple of months.

3) We have designed and constructed an apparatus that allows us to understand if directional sense contributes to escape behaviours. We find limited evidence that it does, however, we have not yet been able to follow up these experiments.

4) As part of the measurements in Obj (2) we have discovered that the activity of neurones that project to the periaqueductal gray, and to a lesser extent those projecting to the thalamus, are associated with changes in locomotion and arousal state of the mouse, suggesting that modulation of the output of these pathways by context, such as anxiety, may gate their effectiveness at driving freeze of flight responses. In addition we have developed a novel behavioural assay where animals show spontaneous visually-guided behaviour in a virtual reality environment. We have now made high-density electrophysiological measurements from thousands of neurons in the superficial and intermediate layers of SC during this behaviour and find that many neurons in the intermediate layers, but not in the superficial layers, are strongly linked to the behaviour. We are currently analysing these responses to understand if the activity of the neurons in the intermediate layers are likely to be causal in the behaviour. We expect to complete these analyses over the next couple of months.
Exploitation Route We believe our findings will have importance for transport (particularly autonomous control systems, such as self-driving vehicles) because they will provide much needed information about how subcortical ("unconscious") brain pathways signal, and mediate responses to, potentially threatening events. Knowledge of how these pathways are used in instinctive visual behaviours may guide the development of better control systems. We also believe our fundings are likely to be important to pharmaceutical and medical biotechnology industry because these instinctive behaviours may provide better frameworks for measuring the efficacy of treatments in animal models of eye disease.
Sectors Pharmaceuticals and Medical Biotechnology,Transport

 
Description Does the brain speed up when we move?
Amount £478,154 (GBP)
Funding ID BB/W01579X/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 06/2022 
End 06/2025
 
Description Moorfields Eye Charity PhD Studentship
Amount £100,000 (GBP)
Funding ID R180015A 
Organisation Moorfields Eye Charity 
Sector Charity/Non Profit
Country United Kingdom
Start 12/2018 
End 12/2021
 
Title BonVision 
Description An open source visual environment generator capable of rendering 2D and 3D scenes and patterns, in a viewpoint dependent manner, and natively integrated into an event related framework (Bonsai) capable of closed-loop interactions (eg. with body pose) and interfacing with hardware peripherals. As of March 2020 we have produced a website detailing how to use the software package, and have produced a manuscript outlining the key achievements, indicative experimental data on viability, now released on biorxiv. 
Type Of Material Technology assay or reagent 
Year Produced 2019 
Provided To Others? Yes  
Impact No impacts yet. 
URL https://bonvision.github.io/#
 
Description Visually-guided instinctive behaviour in rodents 
Organisation GlaxoSmithKline (GSK)
Department Institute of Ophthalmology
Country United Kingdom 
Sector Academic/University 
PI Contribution We have developed new behavioural tests for rodents that show instinctive behaviours in response to simple visual stimuli. These tests grew out of our observation that during training on visual detection tasks, rodents initially display instinctive withdrawal response to some visual stimuli, that they then habituate too under appetitive conditioning. To understand whether these instinctive behaviours were generic to visual stimuli, or elicited by specific visual stimuli, we video taped untrained animals exploring a box, while we presented different visual stimuli on a computer monitor. We found that different visual stimuli elicit different instinctive behaviours. Because these behaviours do not require training, they provide a simple method for understanding visually guided behaviour in rodents. We have now developed largely automated methods for presenting stimuli and analysing videos of responses.
Collaborator Contribution We have developed partnership with Dr Rachael Pearson in the Institute of Ophthalmology. Dr Pearson researches the use of stem cells in treating eye-disease, using mice as an experimental model. She has used the tests that we have developed to study the behavioural response of different strains of mice with different developmental or acquired eye-disease. The aim is to use these behaviours to provide a straightforward test of visual function in mice undergoing stem-cell treatment. Dr Pearson and Dr Solomon co-supervise a PhD student - starting December 2018, funded by the Moorfields Eye Charity - to provide baseline data for this behaviour.
Impact Our initial discovery of the behavioural responses was reported in De Franceschi et al. (2016) in the journal Current Biology. In collaboration with Prof Pearson's team we have now been able to characterise the conditions under which these instinctive behaviours can be reliably produced, including age, gender and strain differences, as well as the testing regimes (e.g. retest frequency) under which they do and do not habituate. We have further been able to extend the definition of behaviour from simple changes in locomotion speed to incorporate body pose (such as head movements, spine/tail straightening, or body rotations) which makes the test much more sensitive and able to detect even small reactions to the presentation of a visual stimulus. This work is been conducted as part of PhD student Monica Freitas' candidature and will be written up for publication shortly (time of writing Feb 2021).
Start Year 2015
 
Title BonVision 
Description An open source visual environment generator capable of rendering 2D and 3D scenes and patterns, in a viewpoint dependent manner, and natively integrated into an event related framework (Bonsai) capable of closed-loop interactions (eg. with body pose) and interfacing with hardware peripherals 
Type Of Technology Software 
Year Produced 2019 
Open Source License? Yes  
Impact No impacts yet 
URL https://bonvision.github.io/#
 
Description FENS 2020 - CARE Special Interest Event 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presentation on the comparative advantages and disadvantages of major animal models used in neuroscience research, as part of special forum from the Committee on Animals in Research (CARE) at the FENS 2020 conference (held on-line).
Year(s) Of Engagement Activity 2020
 
Description International Navigation Conference 2018 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact Activity was a symposium at the International Conference on Navigation aimed at engaging industry practitioners with academic research on navigation. An estimated 30-40 people attended the symposium itself but the attendees also engaged with the wider conference. As a result of the meeting the Cognitive Navigation Special Interest Group recruited new members and there have been new discussions about how to link academia and industry, as well as discussions of potentials collaborations (still ongoing)
Year(s) Of Engagement Activity 2018
URL https://rin.org.uk/page/INC2018