Optimising symbiont-mediated RNA interference as a control measure for Western Flower Thrips and Tomato Spotted Wilt Virus

Lead Research Organisation: Swansea University
Department Name: Institute of Life Science Medical School

Abstract

Current control strategies for agricultural insect pests are heavily reliant on chemical pesticides. However, there is no safe targeted chemical pesticide; these chemicals can also affect non-target beneficial insect species such as pollinating bees. The applicants have recently developed a new technology, symbiont-mediated RNA interference (SMR), that can be applied in a wide range of insects. This proposal will extend their success in applying SMR to control populations of Western Flower Thrips (WFT). WFT are a major pest of both vegetables and ornamental crops, and they feed on leaves, flowers, and pollen, of many plant species. They are globally distributed as an invasive species that has spread from western USA in the last 50 years. As a pesticide, SMR offers two-tier specificity, meaning that only the target species, and not beneficial species such as bees, should be affected. This proposal explores how the technology can be optimised for population control of WFT and whether it can be extended to limit transmission of Tomato Spotted Wilt Virus. This plant virus is transmitted by WFT and can infect over 1,000 species of plants in 84 families, giving it one of the broadest host ranges of any plant pathogen; it causes annual losses to agriculture worldwide of over $1 billion value. Demonstrating that SMR can prevent virus transmission by an insect will be an important proof-of-concept, with implications for how the technology could be applied in other contexts such as limiting the spread of Dengue and Zika viruses by mosquitoes. In addition, the research programme will provide experimental data to demonstrate target species specificity, for instance whether there could be any detrimental effects on honey bees, and whether horizontal gene transfer and the evolution of resistance could be concerns with respect to future field applications of the SMR technology.

Technical Summary

With support from a 15 month BBSRC Tools and Resources Development grant, Dyson and Whitten successfully established a new patented technology for gene silencing in insects, mediated by bacterial symbionts, and termed Symbiont-Mediated RNA interference (SMR). The group has successfully applied this technology as a population control measure in Western Flower Thrips (WFT) by targeting an essential insect gene expressed in larvae. WFT are a major worldwide pest of both vegetables and ornamental crops, and they feed on leaves, flowers, and pollen, of many plant species in different taxa. They are globally distributed as an invasive species that has spread from western North America in the last 50 years. In contrast to conventional pesticides, this new SMR biocide offers exquisite two-tier specificity in that it combines the sequence specificity of RNA interference together with the specificity of a symbiont-host association. This 'smart' technology has significant commercial potential, with the prospect of replacing conventional pesticides that are toxic to non-target fauna and to which resistance of target species is a very real problem. This proposal explores how the technology can be optimised for population control of WFT and whether it can be extended to limit transmission of Tomato Spotted Wilt Virus, establishing a proof of concept for applying SMR to limit insect spread of other RNA viruses. This plant virus is transmitted by WFT and can infect over 1,000 species of plants in 84 families, giving it one of the broadest host ranges of any plant pathogen; it causes annual losses to agriculture worldwide of over $1 billion value. In addition, the research programme will provide experimental data to demonstrate target species specificity, and whether horizontal gene transfer and the evolution of resistance could be concerns with respect to future field applications of the SMR technology.

Planned Impact

The research in this proposal is designed to strengthen further the prospects for commercialization of a patented technology developed by the applicants, symbiont-mediated RNA interference (SMR), and to seek to replace harmful non-targeted chemical pesticides with a smart, environmentally-friendly alternative and so improve worldwide agricultural productivity.

At the end of a successful 15 month BBSRC-funded Tools and Resources Development grant to develop the SMR technology, the applicants, with help from Swansea University's Tech Transfer Office (Research, Enterprise and Innovation Services; REIS) sought protection of the intellectual property with a broad patent application (GB1415502.2). In addition, after completing further research to demonstrate application of the technology in Western Flower Thrips, a second, more specific patent application was filed (PCT/GB2016/051683). As a consequence of these patents, the applicants were contacted via REIS by the US agritech company TechAccel (www.techaccel.net/) and a collaborative research agreement between Swansea University and the company followed thereafter.

The proposal aims to optimize and satisfy certain safety criteria pertaining to the population control of an agricultural insect pest population using SMR. In addition, the proposal also seeks to demonstrate how the technology can be used to prevent transmission of a plant pathogenic virus by the insect. This virus has a huge worldwide impact on agricultural productivity. This study will provide a precedent for the control of other insect-vectored pathogens of agricultural importance and, in addition, viruses that cause human and animal disease. For example, the technology could be translated to limit transmission of arboviruses transmitted by Aedes mosquitoes, such as Dengue, Zika and Chikungunya. Consequently, the impact of this proposal is far-reaching and embraces agricultural productivity, and both human and animal health.
 
Description We have determined alternative gene targets for control of thrips larvae.
We have determined that strain differences between one of the symbiotic bacterial species, BFo1, of Western Flower Thrips determine whether the second symbiont, BFo2, can be established in the insect. This is likely due to differences between strains of a Type VI secretion system that BFo1 employs to kill other bacterial species.
We have established that BFo1, but not BFo2, can establish itself in other insect species, namely a common pollinating insect, the bumblebee, and a natural predator of Western Flower Thrips, the pirate bug.
Exploitation Route The technology has potential for commercialization.
Sectors Agriculture, Food and Drink

 
Description Presentation to scientists at BASF
First Year Of Impact 2023
Sector Agriculture, Food and Drink
Impact Types Economic

 
Description Newton Mobility Grants 2018 Round 1
Amount £11,500 (GBP)
Funding ID NMG\R1\180434 
Organisation The Royal Society 
Sector Charity/Non Profit
Country United Kingdom
Start 07/2018 
End 06/2020
 
Description Exploiting symbiont-mediated RNAi for control of Western Flower Thrips 
Organisation TechAccel LLC
Country United States 
Sector Private 
PI Contribution We have developed a new technology that can be exploited to control populations of pest insects.
Collaborator Contribution TechAccel have provided input into design of the research they are funding, in addition to funding it.
Impact US Patent App. 15/580,042, 2018
Start Year 2018
 
Description Population and persistence of bacterial symbionts of Western Flower Thrips in bumblebees 
Organisation University of Ghent
Country Belgium 
Sector Academic/University 
PI Contribution We provided genetically manipulated strains of 2 different bacterial species expressing GFP.
Collaborator Contribution They have completed extensive tests to measure initial population and subsequent persistence of these bacteria in the gut of bumblebees, as well as measuring the impact of the bacteria on insect fitness.
Impact Comprehensive data sets that are currently being written up for publication.
Start Year 2021
 
Title Pest control system 
Description The invention relates to a genetically transformed or transfected bacterial cell of a gut symbiont of an insect belonging to the Order Thysanoptera wherein said cell is transformed to express double-stranded RNA (dsRNA) active against at least one selected insect gene; a vector for transforming or transfecting said bacterial cell; an insect including said transformed bacterial cell and a method of pest control employing the use of said bacterial cell and/or said insect. 
IP Reference US Patent 15580042 
Protection Patent granted
Year Protection Granted 2018
Licensed No
Impact A contract research agreement with a US company, TechAccel.
 
Description Presentation to BASF 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact BASF are interested in developing novel pest insect control strategies
Year(s) Of Engagement Activity 2023