NanoDrill - A new versatile research tool - high spatial resolution light activated molecular nanomachines

Lead Research Organisation: Durham University
Department Name: Chemistry

Abstract

An important need for future bio-medical and fundamental cell biology is the targeted in vivo destruction of selected cells and cell types. Cancer affects every country regardless of financial status, medical infrastructure or the availability of highly-skilled specialists and is responsible for 8.2 million deaths/year worldwide. Our vision for the future is to develop a series of light-activated molecular nanomachines - Nano-drills - to target cancerous cells selectively and safely eradicate them. Currently this can only be facilitated using highly invasive surgical or radiotherapeutic procedures that are often harmful to administer.

We have already demonstrated that our Nano-drills (molecular Nano-Machines, MNMs) can selectively destroy cells using small quantities of ultraviolet activation light. The next phase of our research is four-fold. First, we must enable multi-two-photon (2PE) activation on our existing microscope system using biologically safe near-infra-red (NIR) light for live-cell studies. Second, extend the family of cell type and pathological condition specific nano-drills to allow a wide range of cancer cells to study. Third, design nano-drills that can be activated using plain visible light in order to comply with already established protocols in biomedical research. Fourth, create a new breed of nano-drills that will first be internalised by the targeted cancer cells and subsequently allowing eradication to be triggered them from within. This will promote a more controlled single-cell precision research tool.

Preliminary studies showed that our MNMs can be successfully activated using 2PE. In order to continue this research, we need a fast, high resolution live cell capable Multi-Photon Microscope (MPM) to image live cells. Unfortunately, due to the nature and unique instrumental requirement an off the shelf MPM system costs in the region of £500,000. However, we propose to develop a suitable custom system by adapting existing equipment at fraction of the cost. We will equip our Leica SP5 II confocal system with a tuneable high repetition rate state-of-the-art NIR laser. This experimental modification will allow us to directly compare live-cell molecular nanomachine activation with both UV and 2PE excitation and exceed the capabilities of a standard off-the-shelf microscope. We have already purchased all associated auxiliary optical components needed for attaching the NIR laser. We advanced the instrument build to a stage, where after sourcing the required laser system a simple 'plug and play' approach will yield the multi-photon upgrade on our instrument within a few weeks.

Once fully developed it could form a new extremely high precision biological research tool and opens new horizons toward wound healing and tumour/cancer progression studies. It could pave the way towards a non-invasive treatment of chemotherapeutic agent resistant cancers, such as metastatic breast cancer. This project has a potential game-changing impact on a global scale.

Technical Summary

The key innovation is the development of a fundamentally new single-cell precision biological research tool using cell type and metabolic/morphological state specific molecular nanomachines and biologically safe near infra-red activation. In order to achieve this, we have set out to achieve the following work-packages:
1) Enabling 2PE activation on our existing microscope system light for live-cell MNM studies. We have advanced the instrument build to a stage, where after sourcing the required NIR laser system a simple 'plug and play' approach will yield the multi-photon upgrade on our instrument within a few weeks.
2) Extending the family of cell type specific MNMs to target skin, colorectal, breast and prostate cancer cell lines by incorporating short target peptide sequences, using copper-catalyzed cycloaddition. Using PC3 cells, MNM cell membrane anchoring and targeted necrotic cell destruction has already been successfully demonstrated (Nature, 2017, 548, 567-572).
3) Developing MNMs with excitation/activation wavelengths extending into the visible range (above 405 nm) by attaching electron donating functional groups onto the rotor moiety at position 2 or 4 or by substitution of the thioxanthene stator moiety with a 9H-fluorene. These will introduce a bathochromic activation wavelength shift and also enhance multi-photon cross-section.
4) Establishing whether a more biologically favoured apoptotic cell death pathway could be promoted by incorporating hydrophilic pendant side chains in order to facilitate membrane transport, uptake and promote subsequent light activated cell-death form within the cell.
Combining WP2 and 4 will pave the way towards the development and study of MNMs with hybrid substitution. Once fully developed and validated these MNM will open new horizons toward wound healing or tumour/cancer progression and improve and extend molecular toolbox of biological and biomedical researchers wold-wide.

Planned Impact

Impact will be delivered by fulfilling the proposed research's key objectives and provide the stakeholders in various sectors with a novel potentially non-invasive photodynamic therapy platform using light activated molecular nanaomachines and biologically safe multi-photon excitation.
The project will ensure and deliver short and long term impact across four key areas:
People:
The training delivered to the PRDA will in part address a skill shortage in a key area affecting national competitiveness in optically active nano-materials and optical imaging research worldwide. The UK has an international standing in the fields of bio-imaging and chemical-biology and the generation of new knowledge in these areas that the project will produce will help to maintain this global advantage via contributing into a novel promising aspect of global healthcare. The PI is committed with an extensive track-record of the University's outreach programmes (i.e. Durham Celebrate Science, 3 days-7000 people/year since 2008). These activities include bringing science to students and teachers and the general public. The public engagement activities will include the use of social media to inform the public of the progress of the project and highlighting the research at public events (e.g. Royal Society Summer Science Fair, invited speaker, 8 public lectures, 2015-2018; Science Museum Lates 2015/2017). Our aim is not only to educate and inspire the next generation of scientists but also raise the public's awareness of our research. We propose to use our combined findings and create a suite of demonstration material, accompanied by adaptable outreach activities that can be delivered to all ages at Science fairs, demonstration lectures or in schools.
Society:
The development and validation of a fundamentally new single-cell precision biological research tool using cell type and metabolic/morphological state specific molecular nanomachines and biologically safe near infra-red activation. Once fully developed and validated it could open new horizons toward wound healing or tumour/cancer progression and improve and extend molecular toolbox of biological and biomedical researchers wold-wide.
Economic :
This directly links with the societal impact detailed above The proposed project has already drawn attention from potential academic, industrial and commercial partners due to the preliminary single photon studies being recently published in Nature. The generation of novel IP will help to develop new markets for commercial exploitation in the UK and worldwide.

Knowledge:
On a fundamental level this project will deliver increasing understanding of the potential that lies within light activated cell type and condition specific molecular nanomachines and will benefit researchers both in academia and industry to work towards extend molecular toolbox of bioscientists and biomedical researchers wold-wide and fill a current void in available resources.
Using the traditional academic channels results will be published via scientific publications submitted to relevant high impact journals and findings will also be disseminated via conference attendance and invited talks. Future outcomes will enable the applicant to base further grant proposals submitted to relevant funding agencies and, since the molecular machines and their associated methodologies are already patent protected by the applicants, private investment or licensing deals to relevant industrial partners. Results generated would not only open new revenues of funding to the applicants but would also enable them to establish vital consultancy links with industrial partners and biomedical/healthcare agencies.

Publications

10 25 50
publication icon
Ayala Orozco C (2020) Visible-Light-Activated Molecular Nanomachines Kill Pancreatic Cancer Cells. in ACS applied materials & interfaces

publication icon
El-Zubir O (2023) Hierarchical self-assembly in an RNA-based coordination polymer hydrogel. in Dalton transactions (Cambridge, England : 2003)

publication icon
Gunasekera RS (2020) Molecular Nanomachines Can Destroy Tissue or Kill Multicellular Eukaryotes. in ACS applied materials & interfaces

 
Description We are pawing the way towards a novel face photodynamic therapeutic method that allows light activated molecular nanomachines to be used as cancer type and metabolic condition specific targeted therapeutics. This award provided a stepping stone for this research technology to be implemented in many aspects of life from trial cancer therapeutics to trying to eliminate antibioti resistant bacteria.
Exploitation Route The information is commercially sensitive please refer to the impact section detailing patent application.
All our publications generated a great deal of interest and continuing to do so in a medical sense
Sectors Chemicals,Healthcare

 
Description A Royal Society public engagement grant has been also secured and combined with this grant we were able to develop a small portable public engegment activity where cancer cells are represented as glow in the dark balloons, and molecular nanaomachiens are light activated forklift trucks. THis has (before the pandemic) been seen and 'played with' by over 10000 people on event such as Celebrate Science Durham and Royal Society Summer Science Exhibition. A small catroon has also been developed to explain the underlying research and science with an educate and entertain approach in mind.
First Year Of Impact 2020
Sector Education,Healthcare
Impact Types Societal

 
Description NanoDrill - A new versatile research tool - high spatial resolution light activated molecular nanomachines
Amount £282,719 (GBP)
Funding ID BB/S017615/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 10/2019 
End 09/2021
 
Title Supporting data and software for: Low-temperature open-air synthesis of PVP-coated NaYF4:Yb,Er,Mn upconversion nanoparticles with strong red emission 
Description Upconversion nanoparticles (UCNPs) have unique photonic properties that make them ideally suited for many applications. They are excited by low-energy near-infrared photons and emit at higher energy (typically visible) wavebands. However, synthesis of UCNPs requires either high pressure reaction chambers or inert atmospheres. Combined with the requirements for high-temperatures (200 to 400 °C) and long reaction times (e.g. up to 24 hours), these place barriers to entry for UCNP research, in terms of both financial barriers and knowledge/"know how". These constraints may also limit the scale of UCNP production for end-user applications. We adapted and further developed a method for producing UCNPs with simple laboratory equipment, i.e. a hot-plate and beakers. No pressure vessel or inert atmosphere is required. The UCNPs produced have a polyvinylpyrrolidone (PVP) polymer coating, with strong red emission due to Mn2+ co-doping within the UCNP crystal lattice. It was found that UCNPs of composition NaYF4:Yb,Er,Mn (Yb = 20 mol %, Er = 2 mol%, Mn = 35 mol%) maximised the red emission whilst also minimising the diameter of the UCNPs to 36 ± 15 nm. These combination of optical and physical properties should make these UCNPs ideal for further development and exploitation, particularly for biological applications where red emission can penetrate over a centimetre of tissue. This dataset and software accompanies the manuscript 'Low-temperature open-air synthesis of PVP-coated NaYF4:Yb,Er,Mn upconversion nanoparticles with strong red emission', which was published in Royal Society Open Science on 19th January 2022. https://doi.org/10.1098/rsos.211508 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
URL http://datadryad.org/stash/dataset/doi:10.5061/dryad.qv9s4mwfn
 
Description Rice 
Organisation Rice University
Country United States 
Sector Academic/University 
PI Contribution This proposal is aimed at strengthening and providing the all-important next milestone in the current ongoing collaboration between the applicant and Prof. James Tour at Rice University. This collaboration has been established, when Prof. Tour visited Durham as the 2015 Durham Lecturer at our department. Prof. Tour proposed a, yet unanswered, scientific challenge as part of one of his lectures, that due to my research expertise and available instrumentation I was able to propose a series of experiments to answer with.
Collaborator Contribution Synthetic work
Impact Nature paper, ACS Biochemistry review article on our work, EPSRC grant, Royal Society GCRF application
Start Year 2015
 
Title MECHANICAL OPENING OF LIPID BILAYERS BY MOLECULAR NANOMACHINES 
Description Embodiments of the present disclosure pertain to methods of opening a lipid bilayer by associating the lipid bilayer with a molecule that includes a moving component capable of moving (e.g., rotating) in response to an external stimulus; and exposing the molecule to an external stimulus before, during or after associating the molecule with the lipid bilayer. The exposing causes the moving component of the molecule to move and thereby open the lipid bilayer (e.g., by pore formation). The external stimuli may include an energy source, such as ultraviolet light. The opened lipid bilayer may be a component of cell membranes in vitro or in vivo. The opening of the lipid bilayer may allow for the passage of various materials (e.g., active agents, such as peptide -based drugs) through the lipid bilayer and into cells. Additional embodiments of the present disclosure pertain to the aforementioned molecules for opening lipid bilayers. 
IP Reference WO2018013930 
Protection Patent application published
Year Protection Granted 2018
Licensed Yes
Impact This patent allows our research findings to be exploited in a clinical environment, and allows their application feasibility to be addressed as a novel form of photodynamic therapeutic agents.
 
Description Nanodrills 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Durham Celebrate Science
Year(s) Of Engagement Activity 2019
 
Description Royal Society Summer Science Exhibition 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact BattleBots (please refer to other sections for explanation)
Year(s) Of Engagement Activity 2019