ReMOT Control: Development of a flexible toolkit for the genetic manipulation of insects

Lead Research Organisation: University of Cambridge
Department Name: Genetics

Abstract

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Technical Summary

The CRISPR-Cas9 system has revolutionized genetics by allowing researchers to precisely modify the genome of essentially any organism. For most insects, current approaches rely on injecting the Cas9 endonuclease and guide RNA (or DNA encoding these) into embryos. In many species this is technically challenging and severely limits the scale and scope of genetic manipulations. We recently developed a revolutionary approach to efficiently mutate genes by delivering the Cas9 ribonucleoprotein (Cas9 and guide RNA) to oocytes by injecting adult females. This technology, which we termed ReMOT Control, relied on fusing Cas9 to a ligand from the Drosophila yolk protein that enters oocytes by receptor-mediated endocytosis. Here we will extend this technology to new forms of genetic manipulation and new species.

Our technology lends itself to delivering the molecules required for a wide range of genetic manipulations to developing embryos. Using fly and mosquito systems, we will first extend our existing Cas9 approach from simple mutagenesis to true genome editing involving the integration exogenous DNA. We will then adapt the technology both to alter gene expression by delivering RNAi and over-expression plasmids to embryos, and create transgenic insects using the phiC31 system. Finally, we will devise a straightforward strategy to identify ligands that can target cargos to the oocytes of a wide range of other Dipteran species, allowing the technique to be applied to other species of agricultural or medical importance. Together, this work will greatly enhance the molecular tool kit available to researchers working on a wide range of insect species.

Planned Impact

Insects are of critical importance to life on earth. From a human perspective some species vector disease or are agricultural pests, while others like pollinators are beneficial. Regardless of their relationship with humans, tremendous insights into the biology of insects has been achieved with reverse genetic approaches, and in turn these insights have led to economic and public health advances. However, most of this work has been achieved in only a limited number of commonly studied species and many insects are recalcitrant to genetic manipulation. Transferring these technologies to other insect species would be tremendously significant and enhance our capacity to understand, utilize and control insects. We have developed a revolutionary new system to target cargo to the insect ovary which overcomes many of the current hurdles for editing the genomes or altering transcription of many insect species. Our work will build the foundation of new approaches to edit and manipulate the genetics of model and non-model insects alike, thus greatly expanding tools available to a range of scientific fields studying a broad spectrum of insect species. As such, our findings will stimulate research in these areas underpinning human health and food security.

Publications

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Description CRISPR-Cas9 has been revolutionary in allowing researchers to precisely alter the genomes of animals and plants. The Cas9 enzyme allows the DNA to be broken at a specific position in the genome. The organism then repairs this DNA break, and it is the repair process that results in changes to the genome at that position. When the repair is carried out by end-joining mechanisms, the result is small mutations that can be used to inactivate the target gene. This process is widely used in insects and is often very efficient. However, researchers often wish to incorporate a new stretch of DNA from a 'donor template' into the genome, and this relies on a different process called homology directed repair (HDR). A major challenge facing researchers in insects such as the model organism Drosophila is that this process is very inefficient. We have found that the efficiency of this process can be increased altering the Cas9 protein so that it can bind to this donor template. We did this by adding a domain to the Cas9 molecule that covalently binds a specific DNA sequence. This DNA sequence was then added to the donor template. This resulted in increased HDR rates. We are currently testing whether this effect results from cas9-donor template binding, or the changes to the cas9 molecule per se.
Exploitation Route Cas9 based genome editing is one of the most widely used tools in genetics. Our research can be directly adopted by researchers working on Drosophila and mosquitoes, and we hope it will make their research proceed faster and more cost effectively.
Sectors Other

 
Title Drosophila lines for efficient genome editing 
Description We have created Drosophila lines that can be used to efficiently edit the Drosophila genome. To do this the flies express the Cas9 protein fused to a DNA binding protein derived from the virus PCV. By adding the recognition sequence for this protein to a DNA molecule, the DNA can be tethered to the Cas9 molecule. This increases the efficiency with which the donor template is used to repair the Cas9-induced double-stranded breaks in the Drosophila genome. This overcomes a major hurdle in generating transgenic flies, which is the the low rate of homology directed repair compared to end-joining repair. 
Type Of Material Technology assay or reagent 
Year Produced 2021 
Provided To Others? Yes  
Impact This tool is being used by one other group. The fly lines were only made available recently, so they have not made significant impacts so far.