Biophysical defence in the mammalian gut: Unlocking the molecular mechanisms of dietary fibre interaction with mucin glycoproteins.

Lead Research Organisation: University of Nottingham
Department Name: Sch of Biosciences

Abstract

Public Health England dietary recommendation for fibre is 30 g/day - twice above the average adult consumption in the UK. The recommendation is based on epidemiological evidence in which beneficial health outcomes, such as decreased risks of developing diabetes, heart disease and arthritis, are found to be associated with the diet rich in naturally integrated dietary fibre associated with the consumption of whole cereals, vegetables and fruit [SACN Carbohydrates and Health Report (2015)]. The definition of dietary fibre - "a type of carbohydrate that cannot be digested by our bodies' enzymes" - is based on chemical analysis and does not provide a fair prediction of its physiological effects. To date, there are no reliable measures of fibre "goodness" in term of its impact on the overall digestive health. This is partly due to a lack of understanding of fundamental mechanisms of how fibre "works" in human body.
In this project, we aim to advance our understanding about the role of dietary fibre in the protection of the gut and its mucus lining. Mucus secretions play a vital role in maintaining gut health by forming a physical barrier and supporting healthy gut microbiota. In the healthy gut, microbes reside in the upper layers of the mucus film, and thus are kept separate from the intestinal tissues. This physical separation minimises the possibility of microbes' incursion into the epithelium, which can cause inflammatory response and possibility of developing a chronic condition or gut dysfunction.
The mucus role in digestion and drug delivery is often overlooked due to mucus chemical complexity and heterogeneity. We take a different approach and put our focus on mucus biophysical properties such as flow properties (viscosity), "sliminess" (viscoelasticity) and lubrication. The project will consider and explore the role of these biophysical factors in order to identify the mechanisms by which dietary fibre affects barrier and protective functionality of mucus to ensure our digestive organs remain in good working order, especially in aging population.
Taking full advantage of novel characterisation and imaging facilities, the proposed study will consider a systematic approach whereby research will progress from model dietary fibre systems to food fibre particles isolated form white wheat flour. We will seek to vary systematically the dietary fibre composition, particles size and its mechanical property. The latter is of particular importance for advancing the area of minimally processed foods, which must strive to retain the natural structure of dietary fibre where the "soft" components (soluble fibre) are integrated within the solid-like particles (insoluble fibre). Further, through enzymatic modification and physical processing, we seek to develop dietary fibre assemblies that specifically designed to interact with mucus. In particular, we will focus on processing of wheat endosperm cell walls, a key fibre component of white wheat flour, to target the delivery of fibre functionality through one of the key cereal crops.
The outcomes of this study will advance the knowledge base of how functional dietary fibre can benefit mucus integrity and its barrier function. In practice, the results of this study will provide scientific underpinning and a set of new measurement techniques and tools for the food industry to enable rational development of healthier foods in an effort to increase the fibre intake across the UK. The insights generated will also guide the development of improved crops with enhanced dietary fibre functionality. The broader impact of this study has the potential to guide emerging research that targets major problems and challenges of digestive health such as gluten intolerance, inflammatory bowel dysfunctions and cystic fibrosis.

Technical Summary

Mucus plays pivotal role in gut health, including its role in maintaining healthy microbiota. Despite the importance of mucus biofluids to human health and well-being, there is a limited knowledge about how dietary fibre interact with mucus. The emerging evidence suggests that fibre-rich diet can support mucus integrity and boost its barrier function.
This project considers the effect of dietary fibre on biophysical properties of mucus, such as rheology (flow, viscoelasticity), hydration, lubrication and permeability. The key scientific question is to uncover the interaction mechanisms between dietary fibre polymers / fibre assemblies (e.g., plant cell walls) and mucus. Common dietary fibre with proven health benefits (e.g., oat b-glucan) display no mucoadhesive properties when tested using instrumental techniques commonly employed in drug delivery research. The emerging hypothesis is that interactions are mediated by the bound water and are physical in nature amplified by polymer entanglement.
By bringing key capabilities in analytical centrifugation, rheology, micromechanical testing and advanced microscopy, the project aims to tackle this fundamental problem by addressing three specific research questions: (a) uncover the role of DF molecular architecture on hydration, viscoelasticity, and responsiveness of mucus/dietary fibre complexes; (b) by controlling the molecular architecture of fibre polymers, unlock the potential of fibre to control mucus rheological properties; and (c) design dietary fibre composites to tune and modulate mucus barrier functionality.
Methodologically, the project focuses on three groups of fibre materials: (a) soluble fibre polymers, (b) model dietary fibre assemblies (soluble/insoluble fibre composite), as well as (c) natural dietary fibre from wheat endosperm cell walls. The research platform enables delivering impact in the areas of food structure design, dietary recommendation policy, and biomedical areas.

Planned Impact

The key challenge facing the effectiveness of dietary fibre (DF)-rich foods is establishing the link between DF structure/composition and the DF role in the gut. This limits our ability to define functional DF beyond rudimentary 'soluble'/'insoluble' categories and constrains development of technological solutions for selecting and modulating fibre structure in order to achieve positive health outcomes. The capability to measure the relevant biophysical and chemical properties of DF is one of the key outcomes of the proposed project. This advance will enable rational design of functional DF by targeting the development of specific DF structures through food manufacture and processing, as well as by optimising growth conditions of the crops.
Our focused project will stimulate wider consideration and discussion across a broader research community, raising awareness of policymakers and industry about the need for revisiting DF categorisation. The link between DF structure and physiological function will provide a set of hypotheses to drive future clinical and epidemiological research, outcomes of which will guide DF recommendation policy to effect improved DF intake globally. The need for improved DF functionality is of great concern to the developed and developing countries alike. In the former, there is a need to increase DF intake, whilst across the latter regions high intake of coarse or non-functional DF may inhibit absorption of proteins and lipids, leading to malnutrition.
By addressing a specific problem of DF interaction with mucins, this project will uncover how DF structure/composition affects mucus rheological and barrier properties, which is one of the least explored functions of DF. In addition, the project will develop biophysical characterisation techniques that deliver, for the first time, the toolbox of methods to characterise DF from the molecular level to nano-mechanics and macroscopic properties such as rheology. These techniques will be utilised by others in the field to probe the relationship between DF structure/composition and other functions of DF in the gut, such as influence on gut microbiota, competitive binding to digestive enzymes and influence on bile salt transport. Further, the outcomes of the project will be instrumental for tackling key digestive health challenges such as gluten intolerance and mucus dysfunction conditions such as inflammatory bowel conditions and cystic fibrosis.
In addition to providing a unique contribution to BBSRC's strategic priority area "Food, nutrition and health", the project will have direct impact on three areas within the food/animal nutrition industry. PI Yakubov's industrial background and CI Harding's track record of working with industry will ensure new insights will be leveraged and expedited with industry.
1. The food industry will receive a map of DF properties that influence mucus barrier function, thus providing a new technology platform for modifying DF from well-established sources (e.g., psyllium husk, oat b-glucan, wheat bran/endosperm cell walls) to produce highly efficiency food thickeners and gluten-replacing ingredients.
2. Improved understanding of functionality of DF from wheat can guide the development of wheat cultivars with specific composition and architectures of arabinoxylan fibre that positively influence mucus barrier function. DF in a form of wheat endosperm cell walls has high industrial potential due to ubiquity of wheat flour-based foods.
3. In addition to human nutrition, the outcomes will have impact in the area of animal nutrition, where fibre-modifying enzymes (e.g., xylanases) are already in use. We envisage that advances of this project associated with the use of arabinofuranosidases will benefit the introduction of solids to weaned pigs as well as in poultry. In addition, we expect that similar technologies can be applied in the area of pet nutrition to target the gut health.

Publications

10 25 50

 
Description The project has established novel protocols for determining the flow and viscoelastic of wheat arabinoxylans of increasing viscosity and concentration and, the effect of; 1) arabinofuranosidase (a-Larabinofrunosidase side chain removal), 2) increasing concentrations of mucin, and their interactions between one another. Through this work a window of opportunity (concentration) of wheat arabinoxylans have been established for which addition of mucin elicits a marked increase in viscosity and barrier function. Novel analytical (analytical ultracentrifugation, AUC) and microscopy (CLSM, Cryo-EM, TEM) approaches to understand the mechanism that underpins this behaviour has been established.
A full study on the effect of wheat arabinoxylan of increasing molecular weight with increasing mucin concentrations has been performed. Outcomes of this work has shown dramatic increases in viscosity with increasing mucin concentrations across all arabinoxylans with increasing molecular weight. Low molecular weight arabinoxylans showed the largest normalised change in viscosity with increasing mucin concentration. Excess viscosity calculations were performed on all analysed samples. All arabinoxylan-mucin mixtures exhibited excess viscosity changes far greater than the theoretical, increasing with concentration. This work was presented at an international conference (Mucins in Health and Disease, July 2022, Utrecht, Netherlands).
Analytical ultracentrifugation of arabinoxylans, mucin controls and mixtures has shown no chemical or specific biding between the two components. This has revealed the mechanism underpinning the behaviour of viscoelastic changes between arabinoxylans and mucin are not due to direc bonding. Correlating this with improved rheological analysis has shown that a supramolecular, flexible comb assembly is forming between the two components whereby the elements of the structures such as side chains of an entangled mucin get interlocked with the side chain of arabinoxylans. This mechanical locking at the molecular level results in the increase of the viscosity of arabinoxylan-mucin mixtures which translates in a dramatic increase in barrier properties of mixed systems.
An improved full study is currently ongoing on low and medium molecular weight arabinoxylans with commercially available mucin at increasing concentrations with comparisons to commercially available beta-glucans and maltodextrin. Including, the effect of side chain removal to fully understand the mechanism underpinning previously established behaviour. All established protocols for rheological, analytical and microscopy approaches will be utilised to fully determine the behaviour and mechanism underpinning the resulting changes in mechanical properties. The work is currently ongoing on two high impact publications arising from this work with one, a review paper focusing on applying advanced multiscale techniques to determine biopolymer interactions with mucin and two, publication of the full study previously established.
A working protocol for the extraction, purification, and preparative analysis of intestinal mucus from sacrificed sows has been conducted. We currently utilise this protocol to provide a physiological representation of gastrointestinal mucin interaction with arabinoxylans. This will be used in a future full study to compare our current invitro data with a more physiologically relevant model.
Exploitation Route The current outcomes can serve as a platform for screening dietary fibre for their propensity to interact with mucus and hence act as a substrate for colonic microbiota.
Sectors Agriculture, Food and Drink,Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description The finding of this work have been used to underpin innovation in the area of dietary fibre utilisation by the industry partners. Current Innovate UK project include
Sector Agriculture, Food and Drink
Impact Types Societal,Economic

 
Description Advanced processing of novel protein-based ingredients: towards designing fibrous microstructures
Amount £136,182 (GBP)
Organisation Motif FoodWorks 
Sector Private
Country United States
Start 05/2020 
End 02/2022
 
Description Australia Partnering Award: Delving down-under using advanced plant phenotyping to uncover how roots grown in hard soils
Amount £50,511 (GBP)
Funding ID BB/V018124/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 08/2021 
End 04/2025
 
Description From Plant to Plate: Biotransformation of Functional Polysaccharides.
Amount £81,000 (GBP)
Organisation University of Nottingham 
Sector Academic/University
Country United Kingdom
Start 10/2020 
End 09/2024
 
Description Improving tolerance for FODMAPs using modified celluloses: defining the role of gelation in reducing gas production in vitro and in vivo
Amount £1,450,552 (GBP)
Funding ID MR/W026295/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 07/2022 
End 03/2026
 
Description Nanoscale Characterisation of Biological and Bioinspired Materials using Integrated Fluidic Force - High-Resolution Confocal Microscopy
Amount £777,905 (GBP)
Funding ID BB/W019639/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 08/2022 
End 07/2023
 
Description Starch Gels and Mucin Interactions: Effect on Structure and Digestion
Amount £43,500 (GBP)
Funding ID INCN-2021-140 
Organisation Association of Commonwealth Universities 
Sector Charity/Non Profit
Country United Kingdom
Start 02/2022 
End 02/2023
 
Description Sustainable Future Foods: Mechano-enzymatic Assembly of Complex Food Structures
Amount £102,000 (GBP)
Organisation University of Nottingham 
Sector Academic/University
Country United Kingdom
Start 10/2021 
End 09/2025
 
Description Uncovering the Barrier Properties of Asthmatic Respiratory Mucus to Prevent Pathogenic Infection
Amount £7,914 (GBP)
Funding ID Nottingham nmRC NanoCAT 
Organisation University of Nottingham 
Sector Academic/University
Country United Kingdom
Start 01/2022 
End 06/2022
 
Description Visualisation and motion analysis of in mouth processes and oral behaviours associated with wearing dentures
Amount £102,026 (GBP)
Funding ID BB/V509553/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 09/2020 
End 09/2024
 
Description Interaction of mucins with flavour molecules 
Organisation University of Nottingham
Department National Centre for Macromolecular Hydrodynamics
Country United Kingdom 
Sector Academic/University 
PI Contribution Our team provided contribution to the characterisation of salivary mucins and their structural and rheological properties.
Collaborator Contribution NCMH team provided analysis of mucins using molecular hydrodynamics techniques and performed analysis of flavour banding capacity in a range of model and food systems.
Impact 1. Probing the effect of aroma compounds on the hydrodynamic properties of mucin glycoproteins V Dinu, T MacCalman, N Yang, GG Adams, GE Yakubov, SE Harding, ... European Biophysics Journal 49 (8), 799-808, 1, 2020 2. Understanding the lost functionality of ethanol in non-alcoholic beer using sensory evaluation, aroma release and molecular hydrodynamics I Ramsey, V Dinu, R Linforth, GE Yakubov, SE Harding, Q Yang, R Ford, ... Scientific reports 10 (1), 1-12, 2020 3. Policy, toxicology and physicochemical considerations on the inhalation of high concentrations of food flavour V Dinu, A Kilic, Q Wang, C Ayed, A Fadel, SE Harding, GE Yakubov, ... npj Science of Food 4 (1), 1-10, 2020
Start Year 2020
 
Description Modelling of dietary fibre xylans using molecular dynamics and machine learning approaches 
Organisation Basque Center for Applied Mathematics
Country Spain 
Sector Academic/University 
PI Contribution Our team has developed complex oligosaccharides that interact with mucin, and, currently, we undertake their characterisation using solution NMR and NMR relaxation experiments.
Collaborator Contribution St Andrews and BCAM teams performs computational modelling of these complex xylan structures using a combination of approaches, including molecular dynamics, density functional theory and machine learning approaches. St Andrews team committed time of a PhD student, whose PhD will be aligned with the project. BCAM team has committed time of an experienced postdoctoral researcher, who provides guidance to the PhD students and provides input into computational analysis.
Impact This is a 3-way collaboration between Nottingham, St Andrews and Basque Centre for Applied Mathematics. This is a multi-disciplinary collaboration. It combines theoretical, modelling and experimental approaches to understand the structure of complex xylans and the molecular mechanism of their interaction with water.
Start Year 2020
 
Description Modelling of dietary fibre xylans using molecular dynamics and machine learning approaches 
Organisation University of St Andrews
Department School of Chemistry St Andrews
Country United Kingdom 
Sector Academic/University 
PI Contribution Our team has developed complex oligosaccharides that interact with mucin, and, currently, we undertake their characterisation using solution NMR and NMR relaxation experiments.
Collaborator Contribution St Andrews and BCAM teams performs computational modelling of these complex xylan structures using a combination of approaches, including molecular dynamics, density functional theory and machine learning approaches. St Andrews team committed time of a PhD student, whose PhD will be aligned with the project. BCAM team has committed time of an experienced postdoctoral researcher, who provides guidance to the PhD students and provides input into computational analysis.
Impact This is a 3-way collaboration between Nottingham, St Andrews and Basque Centre for Applied Mathematics. This is a multi-disciplinary collaboration. It combines theoretical, modelling and experimental approaches to understand the structure of complex xylans and the molecular mechanism of their interaction with water.
Start Year 2020
 
Description Rheological properties of mucus in asthma 
Organisation University of Nottingham
Department School of Medicine
Country United Kingdom 
Sector Academic/University 
PI Contribution Our team is performing rheological characterisation of respiratory mucins under varying solvent and temperature conditions.
Collaborator Contribution Development of mucin collection protocol and utilisation of 3D cell culture to harvest mucus.
Impact This collaboration utilises synergies between expertise residing in the School of Medicine and the School of Biosciences. The commonalty of approaches directed at mucin characterisation will lead to new strategies for creating model mucus systems.
Start Year 2021
 
Description Uncovering the Barrier Properties of Asthmatic Respiratory Mucus to Prevent Pathogenic Infection 
Organisation University of Turin
Country Italy 
Sector Academic/University 
PI Contribution Nottingham nmRC NanoCAT Grant Principle-Investigator (Awarded £7914) Collaboration with UoN School of Medicine, Biodiscovery Institute, Bac3Gel Ltd and University of Turin. "Uncovering the Barrier Properties of Asthmatic Respiratory Mucus to Prevent Pathogenic Infection" JP successfully obtained £7914 funding from the UoN nmRC NanoCAT research funding call to investigate the barrier properties of Asthmatic Respiratory Mucus to Prevent Pathogenic Infection (5 months). JP led the funding proposal as PI, collaborating with local UoN research fellows (biodiscovery Institute, respiratory unit, Co-I's Dr Rakkar and Dr Lee), international academics (Dr Visentin, Department of Molecular Biotechnology and Health Sciences, University of Turin, Italy) and industrial partners, Bac3Gel (Dr Pacheco, Bac3Gel Ltd, Portugal).
Collaborator Contribution International academics (Dr Visentin, Department of Molecular Biotechnology and Health Sciences, University of Turin, Italy) and industrial partners, Bac3Gel (Dr Pacheco, Bac3Gel Ltd, Portugal) have been providing samples and composition analysis as well as their scientific input into the process of mucus-mimetic gel manufacture.
Impact Outcomes of this work established; the development of respiratory mucus purification from donor patient human bronchial epithelial cells, production of viral like muco-adhesive and muco-inert nanoparticles (PEG-coated), protocols for imaging using advanced fluorescence (CLSM), electron microscopy (Cryo-EM, ESEM, low-Vac SEM and TEM) at multiple length scales. This work has formed the basis of a larger EPSRC grant application (21st century products) which will be pursued by JP and collaborators titled "Alternatives to vaccines: development of personalised pharmaceutical strategies that block virus-mucus interactions in patients with healthy, early-stage or chronic respiratory diseases." Particularly, to create a highly adaptable platform empowering the development of novel mucolytic and muco-kinetic products enhancing barrier protection of mucosal interfaces for patients with respiratory diseases at all stages. JP was also awarded a Research Career Development Fund, University of Nottingham, (Awarded £800) to visit his International Academic and Industrial Partners from NanoCAT Research Grant to pursue this further.
Start Year 2022
 
Description "Atomic Force Microscopy Applications in Bioscience Challenges ", University of Toronto, Faculty of Dentistry, Invited Seminar 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Schools
Results and Impact Postdoctoral Fellow, Dr Jacob Pattem presented before 40 attendees discussing Bioscience challenges that can be addressed using Atomic Force Microscopy. Discussions were held on possible development of new techniques and methodologies for studying biological gels and mucus-related systems in the context of oral health.
Year(s) Of Engagement Activity 2021
 
Description "Biofilm mechanics", Newcastle University, Centre for Oral Health Research, Seminar Series. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact Postdoctoral Fellow, Dr Jacob Pattem presented before ca. 30 attendees discussing biofilm mechanics and challenges in its nano- and micro-scale characterisation.
Year(s) Of Engagement Activity 2021
 
Description Dietary Fibre - Mucus Interactions Enhance Mucosal Barrier Properties 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact July 2022 Poster Presentation, Mucins in Health and Disease, Utrecht, Netherlands. "Dietary Fibre - Mucus Interactions Enhance Mucosal Barrier Properties"
Year(s) Of Engagement Activity 2022
URL https://www.mucinconference.com/
 
Description EPNOE Research Roadmap 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact Within the European Polysaccharide Network of excellence, we have developed a Research Roadmap 2040 for the future of polysaccharide research. This targets policymaker and research groups as well as general public. The main objective of this document is to illustrate that polysaccharides are at the central point of the world of tomorrow as a transition to sustainable technologies is crucial for the future of humanity. Proper utilisation of polysaccharide resources has the potential to increase biodiversity, enhance food safety and sustainability, and decrease CO2 emissions and pollution. Three main drivers strongly push the use of polysaccharides: 1) The emergence of a bio economy that increases the contribution of bio-based products; 2) They are polymers with exceptional properties, opening routes for novel applications in all sectors of human activities like materials science, nutrition, health, personal care, and energy; 3) The renewable character of polysaccharides, making them the primary CO2 neutral candidates for the global transformation to a more sustainable world.
The launch event for the EPNOE Research Roadmap 2040 took place on the 31 January 2023 at the Thermotechnisch Instituut, KU Leuven, Belgium and attracted more that 100 participants attending in person and online. Two members of the European Commission attended the event, alongside representatives from the industry. The action points to be taken by the Commission is to implement the RRM2040 into their next stratigic document. The working group for this is currenlty being established.
Year(s) Of Engagement Activity 2022,2023
URL https://www.epnoe.eu/discover/research-roadmap/
 
Description Towards Understanding Polyphenol Astringency: The Role of Human Saliva 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Schools
Results and Impact Gleb Yakubov has delivered an invited public talk at the event organised by the University of Brawijaya (Indonesia) as part of the evening sessions themed "Anti-Stress Coffee" (online event, ca. 300 attendees). https://www.facebook.com/dinskopi1/photos/a.107344349933102/550745648926301
Year(s) Of Engagement Activity 2020
URL https://www.facebook.com/dinskopi1/photos/a.107344349933102/550745648926301