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Investigating the thermal biology of inflammasomes - is NLRP3 a thermosensor?

Lead Research Organisation: Queen's University Belfast
Department Name: Sch of Medicine, Dentistry & Biomed Sci

Abstract

Inflammation is a natural response to infection and injury and is an essential part of our immune response which protects us from invading microbes. For example, when we get a cut on our finger, the redness, heat and pain that we feel actually helps us clear the infection and heal the wound. Inflammation is therefore generally beneficial to us. However, it is becoming clear that inflammation also plays a negative role in many diseases, particularly those associated with ageing and metabolism. In disorders such as arthritis, liver disease, and Alzheimer's disease, this damaging inflammation causes disease progression. It is therefore imperative that we study the molecular mechanisms of inflammation as this informs our understanding of these prevalent diseases which are a huge burden on our health service and our society.

The main objective of our research proposal is to discover how a protein complex called the inflammasome is regulated or fine-tuned during the immune response. Inflammasomes, and specifically one type of inflammasome called NLRP3, are one of the most potent causes of inflammation in our immune cells. Our preliminary experiments have shown that increased temperatures, which are similar to those which occur during fever, seem to specifically block the inflammation caused by inflammasomes. This suggests that the immune response has developed a way to limit excessive or harmful inflammation triggered by these inflammasomes. We want to understand how this happens and the first aim of our study is to define how heat shock proteins (HSPs), which are naturally induced by high temperatures, influence inflammasome activity. To do this we will perform experiments using immune cells called macrophages which express high levels of inflammasome proteins. We will use chemical inhibitors of HSPs to study how HSP function affects inflammasome-dependent inflammation and the interactions of inflammasome proteins.

Our next focus will be the inflammasome sensor protein NLRP3. We have developed a new idea that NLRP3 itself can sense changes in temperature. Changes in temperature are a physiological stress faced by all organisms and as NLRP3 is able to sense many types cellular stress it could thus also be a thermosensor. To investigate this idea, we will use advanced techniques such as quantitative mass spectrometry to determine how NLRP3 behaves when cells are heated to fever range temperatures. We suspect that how NLRP3 interacts with other proteins will change with changes in temperature.

Our third objective is to understand how mutant forms of NLRP3 are activated by cold temperatures. Mutations in NLRP3 cause a rare inherited disease called familial cold autoinflammatory syndrome (FCAS). FCAS patients experience inflammatory symptoms such as skin rashes and fever when they are exposed to cold temperatures. No one yet understands how this unusual response occurs and so we will develop new cell models to study the mechanisms of this disease. We will then study the behaviour of FCAS NLRP3 in these cells using mass spectrometry and other biochemical techniques.

Ultimately, new knowledge about the function and regulation of inflammasomes and NLRP3 could help the development of new drugs for people suffering with inflammatory diseases.

Technical Summary

Inflammation is an essential host response to infection and injury, but unregulated inflammation is highly damaging to the host and must be limited by negative feedback signalling. Inflammasomes are intracellular protein complexes that control the production of the pro-inflammatory cytokines IL-1beta and IL-18 and a lytic cell death programme known as pyroptosis. Inflammasome signalling is thus an extremely inflammatory process and inflammasome-dependent inflammation is associated with the pathogenesis of many common diseases including arthritis, Alzheimer's Disease and NASH. While clinical trials for NLRP3 inflammasome inhibitors were initiated in 2019, there remains a deficit in our knowledge of inflammasome regulation, that urgently needs to be addressed. The endogenous mechanisms that limit inflammasome activity are not understood and this research proposal will address this gap in our knowledge. Our novel preliminary data demonstrate that fever range temperatures can specifically limit inflammasome activity in mouse and human macrophages. Furthermore, we have identified that NLRP3 itself is highly sensitive to temperature and thus may function as a thermosensor. We will investigate the temperature-dependent mechanisms of inflammasome regulation using a range of pharmacological and biochemical approaches. We will employ cellular thermal shift assays and cutting-edge advanced quantitative mass spectrometry techniques to study NLRP3 protein-protein interactions as a function of temperature. Mutations in NLRP3 cause familial cold autoinflammatory syndrome (FCAS) but how cold temperature triggers NLRP3 activation in FCAS is not understood. We will develop FCAS cell models including patient-derived iPSCs that will allow us to characterise FACS NLRP3 using a range of methods. This innovative proposal addresses fundamental questions in the biology of inflammation and our insights will help to advance inflammasome targeted therapies for human health.
 
Description Our work is focused on a protein called NLRP3. NLRP3 is a protein that is an important component of the immune response - when it is activated it causes inflammation and fever. We have disovered that fever range temperatures block the activity of NLRP3 directly. This shows that the immune system has developed a way to sense temperature to protect from over activation during fever.
Exploitation Route Other researchers may be inspired to study how temperature regulates immune cells.
Sectors Pharmaceuticals and Medical Biotechnology

 
Description Development of a Chemoproteomics Centre of Excellence: A Prosperity Partnership for Drug Discovery in Northern Ireland
Amount £2,629,514 (GBP)
Funding ID BB/Y00325X/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 11/2023 
End 11/2028
 
Description Establishment of mass spectrometry based proteomic capabilities at Queen's University Belfast
Amount £690,478 (GBP)
Funding ID BB/X019209/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 07/2023 
End 07/2024
 
Description Examining the thermal biology of the innate immune response
Amount £72,000 (GBP)
Organisation Department for the Economy, Northern Ireland 
Sector Public
Country United Kingdom
Start 09/2023 
End 09/2026
 
Description Is extracellular ferritin is an endogenous danger signal that exacerbates inflammation?
Amount £623,560 (GBP)
Funding ID MR/Y014065/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 05/2024 
End 05/2027
 
Description Love/hate relationships of Achromobacter species and human macrophages
Amount £538,296 (GBP)
Funding ID BB/Y00440X/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 03/2024 
End 03/2027
 
Description Examining metabolism at fever range temperatures in macrophages 
Organisation Trinity College Dublin
Department School of Biochemistry and Immunology
Country Ireland 
Sector Academic/University 
PI Contribution Preliminary data on lactate release from macrophages at FRT.
Collaborator Contribution Providing expertise with metabolism assays - hosting a lab member to conduct SeaHorse assays.
Impact Nothing yet.
Start Year 2025
 
Description Inflammasome protein biology, PTMs, and interactions 
Organisation Queen's University Belfast
Department School of Biological Sciences
Country United Kingdom 
Sector Academic/University 
PI Contribution Dr Coll contributes inflammasome expertise and biological assays and co-supervision of PhD students.
Collaborator Contribution Dr Ben Collins provides mass spectrometry expertise and analysis
Impact Dr Ben Collins ERC consolidator grant application DfE studentship Emma McKay NorthWestBio DTP project REGULATION OF INFLAMMASOME FUNCTION BY THE UBIQUITIN SYSTEM - Dino Rocca https://www.gla.ac.uk/colleges/mvls/graduateschool/northwestbio/projects/bioscience/regulationofinflammasomefunctionbytheubiquitinsystem/ PhD studentship - Thomas McConnell "New chemoproteomics tools for drug discovery in inflammation" https://www.qub.ac.uk/courses/postgraduate-research/phd-opportunities/new-chemoproteomics-tools-for-drug-discovery-in-inflammation.html
Start Year 2021
 
Description Hosted the Pint of Science event "Bac' to health: Beating the bugs that leave you breathless" 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact You have heard "antibiotics don't work on the cold or 'flu" - but soon they mightn't work for bacterial lung infections either! Where are we in the fight against antimicrobial resistance? What new ways are we discovering to treat pneumonia at home and in hospital? And could we someday have vaccines for bacterial chest infections? Join us for an evening of talks that might help you breathe easier about the future of lung infections.
Year(s) Of Engagement Activity 2024
URL https://pintofscience.co.uk/event/bac-to-health
 
Description InflammaZoom webinar series organisation 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact InflammaZoom is an international webinar series on Innate Immunity and Inflammasome biology and was established in June 2020 by Prof Clare Bryant and a group of academics from the UK including Dr Rebecca Coll, to ensure that communication of outstanding science in this area would continue in the face of the pandemic.

This monthly webinar series has been extremely successful, setting a gold standard in quality and accessibility, with over 2000 registered users from over 300 international institutions and companies. This platform has provided an excellent opportunity for immunologists active in innate Immune research internationally, to continue discussions and share findings.

Due to the success of InflammaZoom the company Abcam came on board to sponsor the series and continue to ensure that it is free and widely available.
Year(s) Of Engagement Activity 2020,2021,2022,2023
URL https://www.abcam.com/webinars/inflammazoom-webinar-series
 
Description Lab stand at the Balmoral Show 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Students and postdocs from my lab had a stand at the Balmoral Show where they engaged with the general public about our research on innate immunity.
Year(s) Of Engagement Activity 2023,2024
URL https://www.qub.ac.uk/research-centres/wwiem/Outreach/BalmoralShow2023/
 
Description Participated in the Cell Press Webinar "Targeting inflammasomes for therapies" 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This was a free live webinar attended by 100s of individuals from around the world (Cheri Sirois personal commun.), it is still available on demand. . In the one-hour webinar, we looked at how scientists are targeting and leveraging the biology of inflammasomes to devise new precision treatments for diseases. Matthias Geyer (University of Bonn) and Rebecca Coll (Queens University Belfast) discussed how the structure and function of inflammasomes comes into therapeutic targeting, while Michael McDermott will discuss the landscape of inflammasome-based treatments for disease. There were several questions and discussions after the talks.
Year(s) Of Engagement Activity 2022
URL https://www.workcast.com/register?cpak=8634935718865052