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Canada_IPAP: Impact of alternative nutrition management on AMR burden, transmission and trends in dairy cattle.

Lead Research Organisation: Queen's University Belfast
Department Name: Sch of Biological Sciences

Abstract

Antimicrobial resistance (AMR) is the ability of microorganisms to resist antimicrobial treatments. It is an urgent global public health threat with a direct impact on human and animal health. AMR carries a heavy economic burden due to higher costs of treatments and reduced productivity caused by sickness. Misuse and overuse of antimicrobials are the main drivers in the development of drug-resistant pathogens, including in livestock production. In dairy cattle, antibiotics important in treating pathogens in humans such as penicillin, cephalosporin and tetracycline are also used extensively to treat mastitis.

Furthermore, AMR associated bacteria in livestock can be shed and disseminated to humans via direct contact, or through contact with the environment such as soil, water and faecal material, or through cross-contamination during food processing through a process known as horizontal gene transfer. Recent research has shown that diet has important effects on the presence and types of antimicrobial resistance genes (ARGs) present in dairy cows. The shedding and dissemination of ARGs by dairy cows has also been attributed to stress response of gastrointestinal tract microorganisms in relation to diet, and infection by harmful bacteria.

This is an important finding as feeding management and dietary change are crucial for metabolic adaptation especially in the transition dairy cows. The transition period in dairy cows is the time between 3 weeks before calving to 3 weeks after calving. This period is critical for the health, fertility, and productivity of dairy cows as cows go through drastic metabolic and changes which render them extremely vulnerable to diseases. Therefore, their diet and energy intake during this period is important to boost their immunity and prevent high incidences of infectious diseases which may lead to increased antibiotic use and thus increased resistance.

It is clear that nutritional changes provide the largest opportunities for improving health, reducing antibiotic usage and reducing AMR in dairy cattle. And so, to ameliorate the problem of AMR whilst bosting animal health, the use of non-antibiotic feed supplementation is gaining traction in the dairy industry. However, the impact of these feed supplements on AMR burden and spread of is largely unknown. This emphasises the importance of fundamental research into how feed supplementation contributes to not only animal health and immunity but to AMR burden and transmission, specifically in the dairy industry, currently worth £4.4bn in market prices.

Therefore, in this study, we will investigate potential of using milk permeate as a feed supplement in transition dairy cows to improve animal health while assessing the effect this will have on the AMR burden of dairy.

Milk permeate, is a major by-product of milk processing for cheese and yogurt production Its dried is sometimes used to replace starches in dairy cow diets. However, the use of this product has been limited due to the cost associated with drying and transport and as such, there is always an oversupply of milk permeate. For example, >1M and 30M litres of milk was dumped in the UK and Canada respectively in 2020.

We aim to assess the potential of using surplus milk permeate (in its liquid form), which would otherwise be dumped, as feed supplements to improve immunity and health for transition dairy cow. This allows us address of creating a circular economy.

We will also address the gaps in knowledge regarding dietary change and feeding management using milk permeate and the corresponding effect on the presence and transmission of ARGs during the transition period of dairy cows.

Technical Summary

Dietary changes often with feed supplementation is commonly employed in livestock production especially during stressful production periods, such as the transition period in dairy cows. This period is characterised by drastic metabolic, immune and endocrine changes, rendering cows extremely susceptible to diseases.

This incidence of disease often leads to increase use of antibiotics and consequent increase in antimicrobial resistance genes (ARGs) due to selection pressure. Therefore, feeding management and dietary change are especially crucial for metabolic adaptation of the transition dairy cows.

Moreover, livestock have also been shown to excrete ARGs from their gut bacteria, attributable to stress response mechanism of gastrointestinal microbiota in relation to diet, and infection by opportunistic and pathogen bacteria. Diet has also been shown to have important effects on the complement of ARGs in the rumen microbial community and playing a critical role in the gastrointestinal microbiology and dissemination of ARGs from the dairy cow.

Due to the problem of antimicrobial resistance (AMR), and the emergence of livestock as a reservoir for AMR, there has been a shift to non-antibiotic feed supplementation in production. And while numerous alternative feedstuffs and feed additives including liquid supplementation have been used in an attempt to reduce dysbiosis, promote energy intake, and reduce the incidence of illness, their impact on ARG burden and dissemination and implications for One Health remains largely unknown.

Therefore, in this project, we aim to investigate the impact of liquid supplementation using milk permeate, a by-product of milk processing, on the burden and transmission of ARGs in transition dairy cows, whilst assessing its influence on cow, metabolism via microbiome changes, and immunity.

This will no doubt address the knowledge gaps in feeding management influences on AMR, while potentially creating a circular economy.

Publications

10 25 50
 
Description We have discovered that feeding permeate the by product of milk as a sugar source to dairy cow is an economically viable alterative which does not impact on the health of the animal. Therefore instead of wasting or dumping milk, the bye-product can be recycled and included in feed to boost dietary requirements of dairy cows during the difficult transition period (2 weeks before calving and two weeks post calving).

We aimed to ascertain whether the microbial community in animals fed permeate or not would be significantly different. We are still analysing this data due to delay in sequencing data generation, and do not have concrete conclusion on this as of yet.
Exploitation Route The outcomes of this funding could be taken forward and put to use by others in several ways:

Industry Adoption and Policy Development:
- Dairy farmers and feed manufacturers can integrate permeate into commercial dairy cow diets, particularly during the transition period, to improve feed efficiency and reduce waste.
- Agricultural and environmental policymakers could use these findings to promote sustainable by-product utilization, reducing food waste in the dairy industry.

Further Research and Validation:
- The ongoing microbial and AMR risk analysis could inform future studies on the microbiome and health implications of feeding permeate.
- Additional long-term studies could assess the impact on milk production, cow performance, and potential environmental benefits.

Sustainability and Circular Economy Applications:
- The findings align with circular economy principles, encouraging sustainable dairy farming by recycling by-products instead of discarding them.
- Businesses in the dairy sector could use this evidence to develop and market sustainable feed solutions.

Addressing Workforce and Research Challenges:
- Lessons learned from recruitment difficulties could inform better workforce planning for short-term research positions.
- Institutions and funders may consider offering longer contracts or additional incentives to retain skilled researchers.

Knowledge Exchange and Outreach:
- The findings can be shared through farmer advisory services, conferences, and extension programs to increase awareness and adoption.
- Collaboration with stakeholders, including veterinarians, nutritionists, and regulators, can help ensure the safe and effective use of permeate in dairy diets.
Sectors Agriculture

Food and Drink

Healthcare

Manufacturing

including Industrial Biotechology

 
Title host associated samples from milk permeate fed dairy cows 
Description We have generated 240 samples from 12 fistulated/canulated dairy cows including DNA from cow rumen, faeces and milk permeate. 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? No  
Impact This will be the first dataset from dairy cows fed milk permeate. This will allow us and other researchers to assess how feeding milk permeate (usually waste milk) to promote a circular economy can impact on cow health and contribute to antimicrobial resistance, a global health concern in the dairy industry. The dataset will also be used to generate shotgun metagenomic sequencing datasets which will be uploaded to public repositories and beneficial to the wider scientific research community. 
 
Description AAFC 
Organisation Agriculture and Agri-Food Canada
Department Sherbrooke Research and Development Centre
Country Canada 
Sector Academic/University 
PI Contribution My research Team and I provided technical research expertise and training on anaerobic microbiology to staff at AAFC over a 7 day period. We are also providing expertise on next generation sequencing and generating data as well as analysing the data for our joint project.
Collaborator Contribution Our partners at AAFC, provided in-kind financial contribution up to £40000 by providing experiment animals, including fistulated cows for our permeate trial. They also provided DNA samples from the experiment and contribute expertise to our next generation sequencing project.
Impact This has led to further collaborative agreements with other staff at Queen's University Belfast.
Start Year 2023
 
Description Research and Knowledge Exchange Visit to AAFC Canada 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact I visited collaborators at Agriculture and Agri-Food Canada, as well as new collaborators at the University of Sherbrooke, McGill University, and the University of Laval in Quebec. This visit involved knowledge exchange missions, the presentation of three talks on different areas of research conducted at our Lab and Institute at Queen's University Belfast, and attending presentations by researchers in various groups.
Year(s) Of Engagement Activity 2024
 
Description Seminar 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact 100 participants including 60 research students and postdoctoral researchers and leaders from industry and Government research institutes attended a two day seminar series where we discussed our research. This generated a huge interest and led to further discussions with industry partners for new collaboration opportunities.
Year(s) Of Engagement Activity 2023