Dynamic network reconfiguration at the transition between motor programs
Lead Research Organisation:
UNIVERSITY OF EXETER
Department Name: Institute of Biomed & Clinical Science
Abstract
Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.
Technical Summary
The activity of a neural network is shaped by its connectome. However, this structure-function relationship is not fixed and may change dynamically, enabling rapid changes in response to new situations. In frog tadpoles, motor circuits that generate forward swimming can produce backward-thrusting struggling if the tadpole is held. Whereas swimming involves a wave of muscle contractions propagating from head to tail, struggling is a slower but powerful rhythm that propagates from tail to head. We propose that dynamic network reconfiguration occurs automatically in the spinal cord as sensory inputs change, without involving neuromodulation or feedback from the brain. Continuous sensory inputs trigger reconfiguration in tadpole motor circuit by recruiting additional groups of neurons while depressing the activity of other groups of neurons. Such recruitment/de-recruitment is achieved through changes in the biophysical properties of the neurons and their synapses. We will define these biophysical changes and determine how they reconfigure motor circuits.
The Xenopus tadpole is a unique vertebrate system to study dynamic network reconfiguration because we already know the detailed connectivity of its motor circuits, which is still the main aim of many state-of-art imaging or genetic studies in other model preparations. This will allow us to build computational models of the circuits for both swimming and struggling and analyse the dynamics at the transition between them. In turn, modelling will generate predictions about the reconfiguration mechanism, which will be tested experimentally, e.g. by using optogenetics and in situ dynamic patch clamp recordings.
The principles on how vertebrate motor circuits quickly reconfigure their connectome to generate different behaviours will not only address a fundamental neuroscience question, but also potentially provide insights for the design of robots with improved mobility and obstacle avoidance.
The Xenopus tadpole is a unique vertebrate system to study dynamic network reconfiguration because we already know the detailed connectivity of its motor circuits, which is still the main aim of many state-of-art imaging or genetic studies in other model preparations. This will allow us to build computational models of the circuits for both swimming and struggling and analyse the dynamics at the transition between them. In turn, modelling will generate predictions about the reconfiguration mechanism, which will be tested experimentally, e.g. by using optogenetics and in situ dynamic patch clamp recordings.
The principles on how vertebrate motor circuits quickly reconfigure their connectome to generate different behaviours will not only address a fundamental neuroscience question, but also potentially provide insights for the design of robots with improved mobility and obstacle avoidance.
Planned Impact
The aim of this project is to uncover fundamental principles about switching mechanisms between motor programs. The results will directly benefit a range of neuroscience communities listed in the Academic Beneficiaries section and contribute to improvement of UK shortage of skilled electrophysiologists. The following text outlines impacts beyond neuroscience research.
1) Neuroscience education of general public: This is the main societal impact of our project. Frog tadpoles are among the most familiar animals to the public and attract attention across different age groups. Therefore, they provide a valuable entry point to explain how the vertebrate embryo develops, and how the nervous system is organized and controls behavior. Also, tadpoles provide context for explaining how scientific research is carried out. Thus, using a simple animal is an important societal advantage of our research project. Recently our colleagues from Bristol setup the tadpole website (http://tadpoles.org.uk/) for neuroscience education of general public. This website has been attracting on average 70 visitors every day, totaling around a quarter million a year. We will update this webpage using our new results on struggling. Xenopus tadpoles go through metamorphosis to develop into frogs. A couple of years ago, our St-Andrews colleagues Prof Keith Sillar and Isobel Maynard had started to send spare tadpoles to local schools that the students can observe the metamorphosis process. This activity has received a huge enthusiasm from both students and teachers. With Isobel's recent retirement, Dr Li and Prof Sillar will continue to participate in this outreach activity.
2) Knowledge exchange with clinically applied researchers and potentially pharmaceutic companies: Development of effective clinical tools to tackle movement disorders and spinal injuries rely on understanding the basic principles underlying motor behaviours and the transition between them. This is immensely difficult in mammals. Using tadpoles presents opportunities to obtain novel, deeper insights that relate to these conditions. Both medical practitioners and pharmaceutical companies need insights from basic research to guide their own research activities and design new medicines. Direct communication with these parties can bridge gaps and help to produce better drugs.
3) Knowledge exchange with the robotic industry: Robots are taking over many tedious jobs in industrial and domestic settings. Robots that use mechanical legs for movement can go through surfaces that wheeled robots cannot enter. However, they require better stability and motion control. One difficult problem to address is what happens when a robot is stuck. Work on tadpole locomotion has shown that design details such as nonlinearities can have profound impact on robustness of motor outputs. By revealing how tadpoles quickly and robustly switch between motor programmes when the need arises, our work can potentially lead to more robust, novel robot designs.
4) Knowledge exchange with research policy makers and funding bodies: Due to their evolutionary closeness to humans, mammals have been the favorite for investigating many neuronal system functions and conditions. However, many discoveries have proven the value of choosing the simplest and most appropriate system for investigation of specific questions. Communicating the findings from this project to funding decision-makers will help to support the use of model animals and reduce experiments with adult mammals. Indeed, using tadpoles as a model animal to study motor control is internationally recognized but is carried out almost entirely in the UK. With Prof Roberts's and Dr Soffe's retirement, the tadpole research has been shifting to Scotland (Prof Keith Sillar, Drs Wen-Chang Li and Hong-Yan Zhang). The success of research outputs from this model system will continue to raise the profile of UK research.
1) Neuroscience education of general public: This is the main societal impact of our project. Frog tadpoles are among the most familiar animals to the public and attract attention across different age groups. Therefore, they provide a valuable entry point to explain how the vertebrate embryo develops, and how the nervous system is organized and controls behavior. Also, tadpoles provide context for explaining how scientific research is carried out. Thus, using a simple animal is an important societal advantage of our research project. Recently our colleagues from Bristol setup the tadpole website (http://tadpoles.org.uk/) for neuroscience education of general public. This website has been attracting on average 70 visitors every day, totaling around a quarter million a year. We will update this webpage using our new results on struggling. Xenopus tadpoles go through metamorphosis to develop into frogs. A couple of years ago, our St-Andrews colleagues Prof Keith Sillar and Isobel Maynard had started to send spare tadpoles to local schools that the students can observe the metamorphosis process. This activity has received a huge enthusiasm from both students and teachers. With Isobel's recent retirement, Dr Li and Prof Sillar will continue to participate in this outreach activity.
2) Knowledge exchange with clinically applied researchers and potentially pharmaceutic companies: Development of effective clinical tools to tackle movement disorders and spinal injuries rely on understanding the basic principles underlying motor behaviours and the transition between them. This is immensely difficult in mammals. Using tadpoles presents opportunities to obtain novel, deeper insights that relate to these conditions. Both medical practitioners and pharmaceutical companies need insights from basic research to guide their own research activities and design new medicines. Direct communication with these parties can bridge gaps and help to produce better drugs.
3) Knowledge exchange with the robotic industry: Robots are taking over many tedious jobs in industrial and domestic settings. Robots that use mechanical legs for movement can go through surfaces that wheeled robots cannot enter. However, they require better stability and motion control. One difficult problem to address is what happens when a robot is stuck. Work on tadpole locomotion has shown that design details such as nonlinearities can have profound impact on robustness of motor outputs. By revealing how tadpoles quickly and robustly switch between motor programmes when the need arises, our work can potentially lead to more robust, novel robot designs.
4) Knowledge exchange with research policy makers and funding bodies: Due to their evolutionary closeness to humans, mammals have been the favorite for investigating many neuronal system functions and conditions. However, many discoveries have proven the value of choosing the simplest and most appropriate system for investigation of specific questions. Communicating the findings from this project to funding decision-makers will help to support the use of model animals and reduce experiments with adult mammals. Indeed, using tadpoles as a model animal to study motor control is internationally recognized but is carried out almost entirely in the UK. With Prof Roberts's and Dr Soffe's retirement, the tadpole research has been shifting to Scotland (Prof Keith Sillar, Drs Wen-Chang Li and Hong-Yan Zhang). The success of research outputs from this model system will continue to raise the profile of UK research.
Publications

Balachandar Arun Neru
(2021)
Synaptic pulse duration determines phase difference between asymmetrically coupled oscillators
in JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Borisyuk R
(2023)
From phase advance to phase delay: Flexible coordination between neuronal rhythms by the duration of synaptic input
in Physical Review Research
Description | 1) We have found that when one oscillator drives a second oscillator using coupling pulses, the relative phase between the two oscillators depends on the duration of the pulses. Specifically, as the duration of the coupling pulses is reduced, the driven oscillator becomes more advanced relative to the driver oscillator. This has implication for the swimming and struggling motor activity patterns produced by tadpoles and fish. In these animals, swimming forward is due to oscillatory activity propagating from head to tail. This propagation is reversed during struggling and backward swimming, with oscillation waves starting at the tail and propagating toward the head. Our finding that coupling pulse duration between oscillator can change the relative phase advance/delay between oscillators offers a new hypothesis to explain the reversal of wave propagation associated with struggling and backward swimming. This finding is published in Borisyuk et al 2023. 2) Another new finding is about the relationship between body contraction and electrical activity during struggling motor behaviour. Struggling refers to powerful, rhythmic body contraction that occur when the tadpole is captured and tries to free itself. The body contractions, observed with a high-speed camera, propagate from one point around 2/3 down the tadpole's body length, and propagate toward the head, and toward the tail, from that point. However, electrical activity in immobilised tadpoles' spinal cord, recorded during "fictive struggling", propagates only from tail to head. To explain this apparent contradiction between video footage and recordings of electrical activity in the spinal cord we used a "Virtual Tadpole" model that takes a pattern of spinal cord electrical activity as input, and produce body movements as output. This Virtual Tadpole model showed that even though electrical activity propagates from tail to head through the spinal cord, the pattern of body contractions does propagate from two-third down the body in both directions. This demonstrates that body mechanics play an important role in transducing the pattern of electrical activity produced by the spinal cord. We also showed that if electrical activity propagates instead from head to tail the tadpole cannot free itself. |
Exploitation Route | 1) This new finding can be tested on other nervous systems where activity can propagate in different directions. We have been able to explain why pulse duration affect the relative phase between the driver and driven oscillator, and this can explain why people can experience jetlag when traveling on the north/south axis, i.e. without changing time zone. 2) Our finding about the difference between electrical activity propagation in the spinal cord and body contraction propagation can be applied in robot design. |
Sectors | Healthcare Transport Other |
Description | Life and Physical Sciences interface: Whole animal mathematical and computational modelling of motion |
Amount | £23,690 (GBP) |
Funding ID | BB/X005038/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2023 |
End | 08/2024 |
Description | UKRI - Exeter Covid Extension Funding |
Amount | £25,905 (GBP) |
Funding ID | 112029R |
Organisation | University of Exeter |
Sector | Academic/University |
Country | United Kingdom |
Start | 03/2021 |
End | 09/2021 |
Description | UK-Swiss collaboration: Whole animal mathematical and computational modelling of locomotion |
Organisation | Swiss Federal Institute of Technology in Lausanne (EPFL) |
Country | Switzerland |
Sector | Public |
PI Contribution | This BBSRC Project is a collaboration between the University of Exeter and University of St Andrews. Thus, there are two collaborators in Exeter - Dr Joel Tabak and Prof Roman Borisyuk. Our neurobiological collaborator is Dr Wenchang Li, University of St Andrews. Also, Prof Alan Roberts and Dr Steve Soffe (University of Bristol) provide consultancy for the current project. Our role in Exeter involves computational modelling of the tadpole nervous system. We hope that our new results will lead to new insights into the structure and function of this system and, in particular, on switching between swimming and struggling. From 2022 we establish a new collaboration with the Swiss Biorobotics Laboratory at the Swiss Federal Institute of Technology in Lausanne (EPFL), Switzerland. This collaboration was supported by BBSRC grant: Life and Physical Sciences interface: Whole animal mathematical and computational modelling of motion. The kick off meeting in EPFL (Objective 1 of the project) took place 12-13 October 2023 when the UK research team visited the EPFL. The meeting included several presentations from UK and Swiss teams and there were many fruitful discussions. The meeting was very successful and it became clear that there are many mutual interests and possibilities for productive collaboration. It was suggested to work together on writing the review paper for a top biological journal where recent results on experiments and modelling of tadpole and salamander would be presented and compared. It was a fruitful discussion on planning of collaborative grant proposals. According to Objective 2, we started our preparatory work on organisation of the Workshop on the whole-body movement modelling. Considerable time was devoted to discussion of Workshop organisation. As a result of these discussions, the goals and detailed plans were developed (types of modelling were specified - from neuronal to bio-mechanical models and robots; objects of modelling, animals, were agreed on - from nematode to mammals). A list of leading experts as potential Workshop participants was prepared. After the visit, the UK and the EPFL teams continue to collaborate and meet via Zoom to decide the place and dates of the workshop as well as the finalised the list of participants. |
Collaborator Contribution | Our partners in University of St Andrews provide experimental neurobiological data that we can use to refine our computational models. They also participate directly in our modelling and adjustment of the model, and provide the questions that need to be answered using modelling. Recently our collaborators from the University of St Andrews recorded new spiking and Ventral Root (VR) activities of identified neurons participated in struggling. This data provide a new opportunity for computational and mathematical modelling to deeper understand swimming and struggling behaviour and transitions between them. To deeper understand the mechanism of transition we use the bio-mechanical virtual tadpole (VT) model. This modelling presents a first attempt to build a detailed biologically realistic 3-dimensional model of a whole animal's body and show how its locomotor behaviour is controlled by neuronal networks. The VT model reconstructs detailed physical and anatomical measurements of the shapes and mass distribution of organs like the notochord, muscles and belly in real tadpoles. We place the reconstructed virtual body in "water" and feed patterns of motoneuron spiking from the neuronal model to the muscle segments of the VT model to drive "virtual" swimming and struggling movements. Videos demonstrate that VT model simulations produce realistic swimming and struggling behaviour as well as transitions between them. Thus, combining neuronal and biomechanical modelling we can produce movements in the 3D water pool. Experimental recordings in an immobilised tadpole sculpt the CNS model and provide questions and hypotheses for simulations. CNS model outputs will are used to activate muscles in the VT model and generate movements. The output of the VT model provides the feedback to experiments and the CNS model. Thus, we suggest a new approach to experimental and theoretical studies of movement, where multiple computational experiments with CNS and VT models can produce new insights on how a nervous system generates appropriate movement in response to input signals from different sensory modalities. Our collaborators from EPFL are leading experts in bio-mechanical modelling and robotics and this new collaboration will help us to exchange experiences, methods and discuss new modelling and future collaboration. During the visit to EPFL of UK team, our collaborators suggested to extend several new ideas and techniques which they use for salamander modelling to modelling of young Xenopus tadpoles. We have already started to investigate this ne approaches and found that several of them can help us in description and understanding of tadpole struggling and escaping behaviour. Currently we include the methods and results to the publication on struggling which is under development. |
Impact | Multi-disciplinary: Neurobiology, Computing and Mathematics, Computational Neuroscience, Bio-mechanical modelling. Most of the papers and other publications listed in this submission are a result of this collaboration between Exeter and St Andrews. This collaboration with St Andrews (and previously with Bristol) resulted in 3 BBSRC grants to study the nervous system of the young Xenopus tadpole. Several papers have been published and several papers are in preparation. Currently we plan to continue our collaboration between the University of Exeter and St Andrews to study how neuronal motor circuits appear on the early stages of tadpole development. Currently we are working on the new grant proposal with intention to submit in April 2024. We expect that UK-Swiss collaboration will lead in review article in a leading journal to describe and compare neuronal and mechanical development of young tadpole and salamander. |
Start Year | 2022 |
Description | UK-Swiss collaboration: Whole animal mathematical and computational modelling of locomotion |
Organisation | University of St Andrews |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | This BBSRC Project is a collaboration between the University of Exeter and University of St Andrews. Thus, there are two collaborators in Exeter - Dr Joel Tabak and Prof Roman Borisyuk. Our neurobiological collaborator is Dr Wenchang Li, University of St Andrews. Also, Prof Alan Roberts and Dr Steve Soffe (University of Bristol) provide consultancy for the current project. Our role in Exeter involves computational modelling of the tadpole nervous system. We hope that our new results will lead to new insights into the structure and function of this system and, in particular, on switching between swimming and struggling. From 2022 we establish a new collaboration with the Swiss Biorobotics Laboratory at the Swiss Federal Institute of Technology in Lausanne (EPFL), Switzerland. This collaboration was supported by BBSRC grant: Life and Physical Sciences interface: Whole animal mathematical and computational modelling of motion. The kick off meeting in EPFL (Objective 1 of the project) took place 12-13 October 2023 when the UK research team visited the EPFL. The meeting included several presentations from UK and Swiss teams and there were many fruitful discussions. The meeting was very successful and it became clear that there are many mutual interests and possibilities for productive collaboration. It was suggested to work together on writing the review paper for a top biological journal where recent results on experiments and modelling of tadpole and salamander would be presented and compared. It was a fruitful discussion on planning of collaborative grant proposals. According to Objective 2, we started our preparatory work on organisation of the Workshop on the whole-body movement modelling. Considerable time was devoted to discussion of Workshop organisation. As a result of these discussions, the goals and detailed plans were developed (types of modelling were specified - from neuronal to bio-mechanical models and robots; objects of modelling, animals, were agreed on - from nematode to mammals). A list of leading experts as potential Workshop participants was prepared. After the visit, the UK and the EPFL teams continue to collaborate and meet via Zoom to decide the place and dates of the workshop as well as the finalised the list of participants. |
Collaborator Contribution | Our partners in University of St Andrews provide experimental neurobiological data that we can use to refine our computational models. They also participate directly in our modelling and adjustment of the model, and provide the questions that need to be answered using modelling. Recently our collaborators from the University of St Andrews recorded new spiking and Ventral Root (VR) activities of identified neurons participated in struggling. This data provide a new opportunity for computational and mathematical modelling to deeper understand swimming and struggling behaviour and transitions between them. To deeper understand the mechanism of transition we use the bio-mechanical virtual tadpole (VT) model. This modelling presents a first attempt to build a detailed biologically realistic 3-dimensional model of a whole animal's body and show how its locomotor behaviour is controlled by neuronal networks. The VT model reconstructs detailed physical and anatomical measurements of the shapes and mass distribution of organs like the notochord, muscles and belly in real tadpoles. We place the reconstructed virtual body in "water" and feed patterns of motoneuron spiking from the neuronal model to the muscle segments of the VT model to drive "virtual" swimming and struggling movements. Videos demonstrate that VT model simulations produce realistic swimming and struggling behaviour as well as transitions between them. Thus, combining neuronal and biomechanical modelling we can produce movements in the 3D water pool. Experimental recordings in an immobilised tadpole sculpt the CNS model and provide questions and hypotheses for simulations. CNS model outputs will are used to activate muscles in the VT model and generate movements. The output of the VT model provides the feedback to experiments and the CNS model. Thus, we suggest a new approach to experimental and theoretical studies of movement, where multiple computational experiments with CNS and VT models can produce new insights on how a nervous system generates appropriate movement in response to input signals from different sensory modalities. Our collaborators from EPFL are leading experts in bio-mechanical modelling and robotics and this new collaboration will help us to exchange experiences, methods and discuss new modelling and future collaboration. During the visit to EPFL of UK team, our collaborators suggested to extend several new ideas and techniques which they use for salamander modelling to modelling of young Xenopus tadpoles. We have already started to investigate this ne approaches and found that several of them can help us in description and understanding of tadpole struggling and escaping behaviour. Currently we include the methods and results to the publication on struggling which is under development. |
Impact | Multi-disciplinary: Neurobiology, Computing and Mathematics, Computational Neuroscience, Bio-mechanical modelling. Most of the papers and other publications listed in this submission are a result of this collaboration between Exeter and St Andrews. This collaboration with St Andrews (and previously with Bristol) resulted in 3 BBSRC grants to study the nervous system of the young Xenopus tadpole. Several papers have been published and several papers are in preparation. Currently we plan to continue our collaboration between the University of Exeter and St Andrews to study how neuronal motor circuits appear on the early stages of tadpole development. Currently we are working on the new grant proposal with intention to submit in April 2024. We expect that UK-Swiss collaboration will lead in review article in a leading journal to describe and compare neuronal and mechanical development of young tadpole and salamander. |
Start Year | 2022 |