Lipid transport and metabolism
Lead Research Organisation:
Rothamsted Research
Department Name: UNLISTED
Abstract
Abstracts are not currently available in GtR for all funded research. This is normally because the abstract was not required at the time of proposal submission, but may be because it included sensitive information such as personal details.
Technical Summary
Acyl-CoA metabolism is central to the partitioning of lipids between different cellular pools and underpins not only our understanding of lipid signalling and metabolism but also the ability to engineer production of high value fatty acids in plants. Although the reversible activation of fatty acids by conversion to CoA esters is now known to be catalysed by a large family of acyl activating enzymes, the relationship between this process and compartmentation of different substrates is poorly defined in plants. Similarly, although the transport of lipids and lipid metabolites such as CoA esters plays key roles in metabolism, signalling and development, the molecular details of these processes remain to be established.
This project aims to identify and characterise transporters involved in the movement of fatty acids, acyl CoAs and related molecules across membranes and to elucidate their cellular and physiological roles. A specific goal is to understand how substrates, co-substrates and cofactors of beta-oxidation are imported into peroxisomes and how peroxisomal metabolism is co-ordinated with other cellular compartments. The extent to which non-native lipids are metabolised by beta-oxidation will also be addressed. Longer term aims include the development of methods to assay lipid/metabolite transport, the identification of novel transporters and their roles in lipid compartmentation.
This project aims to identify and characterise transporters involved in the movement of fatty acids, acyl CoAs and related molecules across membranes and to elucidate their cellular and physiological roles. A specific goal is to understand how substrates, co-substrates and cofactors of beta-oxidation are imported into peroxisomes and how peroxisomal metabolism is co-ordinated with other cellular compartments. The extent to which non-native lipids are metabolised by beta-oxidation will also be addressed. Longer term aims include the development of methods to assay lipid/metabolite transport, the identification of novel transporters and their roles in lipid compartmentation.
Planned Impact
unavailable
Organisations
Publications
Carrera E
(2008)
Seed after-ripening is a discrete developmental pathway associated with specific gene networks in Arabidopsis.
in The Plant journal : for cell and molecular biology
De Marcos Lousa C
(2013)
Intrinsic acyl-CoA thioesterase activity of a peroxisomal ATP binding cassette transporter is required for transport and metabolism of fatty acids.
in Proceedings of the National Academy of Sciences of the United States of America
De Marcos Lousa C
(2009)
The NBDs that wouldn't die: A cautionary tale of the use of isolated nucleotide binding domains of ABC transporters.
in Communicative & integrative biology
Dietrich D
(2009)
Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series.
in Molecular biology of the cell
Geisler, Markus; Venema, Kees
(2010)
Transporters and Pumps in Plant Signaling
Gibbs DJ
(2011)
Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants.
in Nature
Holman TJ
(2009)
The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis.
in Proceedings of the National Academy of Sciences of the United States of America
Kemp S
(2011)
Mammalian peroxisomal ABC transporters: from endogenous substrates to pathology and clinical significance.
in British journal of pharmacology
Linka N
(2008)
Peroxisomal ATP import is essential for seedling development in Arabidopsis thaliana.
in The Plant cell
| Description | 1. I discovered (with colleagues at Nottingham University) the first functions in plants for a pathway of controlled protein breakdown, called the N-end rule pathway. We discovered a gene in this pathway because it plays an important role in seed germination and the breakdown of seed oil reserves. However this project also led to our discovery that the N-end rule pathway acts as a sensor for oxygen. This was an important milestone in understanding how plants interact with their environment and has implications for improving flooding tolerance of crops. This is also a nice example of how basic research can lead to unexpected but highly important discoveries. 2. I led an international effort to annotate (name and catalogue) plant members of a large family of genes which code for ABC proteins. ABC proteins are very diverse and play important medical and agronomic roles. In collaboration with the research community, we agreed a standard system of nomenclature which has put an end to much confusion in the past which has arisen from multiple, non-systematic naming systems. 3. With collaborators in Duesseldorf, I characterised two new transport proteins which are important for seedling establishment and mobilisation of seed oil reserves. |
| Exploitation Route | The immediate beneficiary of many these findings is the academic community but the discovery of the plant oxygen sensor is being taken forward by the hypoxia research community and has relevance to breeding or engineering flooding-tolerant crops. The new findings on control of seed oil breakdown might be of future use in developing oilseed crops with enhanced oil composition or yield. The improved annotation and nomenclature of ABC transporters has been used widely by the research community to inform and communicate work on these proteins and I envisage that this will continue to be the case. |
| Sectors | Agriculture Food and Drink Environment |
| Description | The discovery of the plant oxygen sensor is being taken forward by the hypoxia research community and has relevance to breeding or engineering flooding-tolerant crops. Flood tolerant rice has been described as the first step of the second green revolution and other flood tolerant crops are of great importance in relation to food security and climate change |
| First Year Of Impact | 2011 |
| Sector | Agriculture, Food and Drink |
| Impact Types | Societal |
