Understanding Phosphoryl Transfer through Physical Organic Chemistry
Lead Research Organisation:
University of Sheffield
Department Name: Chemistry
Abstract
The transfer of phosphate groups is at the heart of many biological processes. However, unless it is catalysed, they are among the slowest known biochemical reactions. To understand how biological catalysts manage to acclerate these reactions so efficiently requires an insight into the transition state structure - this is the species that must be stabilised to allow the reaction to proceed rapidly. We have defined some of the background characteristics of closely relevant phosphate esters, and need to extend these studies to reveal more detail. Then, using model systems, we shall investigate how specific interactions speed up the reaction and how they affect the probes we use to characterise the transition state. These studies will inform the interpretation of structural and kinetic data of biological catalysts, and help direct the design of more effective artificial catalysts that can be used within a biological context. Such catalysts have valuable potential as robust tools for use in molecular biology, particularly in manipulating DNA if they can be made efficient enough. The same approach and modifications shall be made with Zn based complexes that are already effective for cleaving RNA model compounds; the models will aid their development, and the analysis will establish where to focus further improvements.
Organisations
People |
ORCID iD |
Nicholas Williams (Principal Investigator) |
Publications
Alkherraz A
(2010)
Phosphate ester analogues as probes for understanding enzyme catalysed phosphoryl transfer
in Faraday Discuss.
Feng G
(2009)
Mechanism and transition state structure of aryl methylphosphonate esters doubly coordinated to a dinuclear cobalt(III) center.
in Journal of the American Chemical Society
Kamerlin SC
(2008)
Dineopentyl phosphate hydrolysis: evidence for stepwise water attack.
in The Journal of organic chemistry
Kirby AJ
(2011)
Activating water: important effects of non-leaving groups on the hydrolysis of phosphate triesters.
in Chemistry (Weinheim an der Bergstrasse, Germany)
Kirby AJ
(2013)
Intramolecular general base catalysis in the hydrolysis of a phosphate diester. Calculational guidance to a choice of mechanism.
in The Journal of organic chemistry
Korhonen H
(2012)
The mechanism of cleavage and isomerisation of RNA promoted by an efficient dinuclear Zn2+ complex.
in Chemistry (Weinheim an der Bergstrasse, Germany)
Linjalahti H
(2008)
Cleavage and isomerization of UpU promoted by dinuclear metal ion complexes.
in Journal of the American Chemical Society
Tirel EY
(2014)
Catalytic zinc complexes for phosphate diester hydrolysis.
in Angewandte Chemie (International ed. in English)
Description | That intramolecular hydrogen bonding is structurally sensitive for practical reasons, but not intrinsically sensitive to local structure. That weak interactions can be successfully combined to create highly active metal ion complexes; and that these can be made catalytic by using features that allow intermediate to beak down by carefully designed routes. These routes are relevant to biological catalysts, and show what is possible with specific interactions. |
Exploitation Route | To create more effective artificial catalysts |
Sectors | Chemicals |
Description | To generate a deeper understanding of phosphoryl transfer. |
First Year Of Impact | 2010 |
Sector | Chemicals |
Impact Types | Societal |
Description | European Union Framework 7 |
Amount | £321,878 (GBP) |
Funding ID | 238679 |
Organisation | European Commission |
Department | Seventh Framework Programme (FP7) |
Sector | Public |
Country | European Union (EU) |
Start | 07/2010 |
End | 06/2014 |