Modeling and analysis of integrated metabolic, proteomic and genetic regulatory networs
Lead Research Organisation:
King's College London
Department Name: Mathematics
Abstract
Recent advances in experimental biology enable for the first time the systematic reconstruction of large cellular signaling and regulatory networks. This prompted the birth of `systems biology', which aims to understand the emergence of thelarge scale functional properties of cells from the complex interactions between their molecular components. Achieving this aim requires intensive collaboration between biologists and mathematicians. So far, the mathematical study of complex cellular networks has mainly focused on their topological characterization and evolutionary origin. However, in a separate development, since around 2000 the disordered systems community has been generating powerful new mathematical techniques with which to analyze and solve stochastic processes on complex random graphs in physics and computer science. The aim of this project is to investigate and harvest the potential of transferring these new techniques (in suitably adapted form) to the field of integrated metabolic, proteomic and genetic regulatory networks.
Organisations
People |
ORCID iD |
Anthony C.C. (Ton) Coolen (Principal Investigator) |
Publications
Agliari E
(2013)
Immune networks: multitasking capabilities near saturation
in Journal of Physics A: Mathematical and Theoretical
Agliari E
(2013)
Immune networks: multi-tasking capabilities at medium load
in Journal of Physics A: Mathematical and Theoretical
Annibale A
(2010)
Network resilience against intelligent attacks constrained by the degree-dependent node removal cost
in Journal of Physics A: Mathematical and Theoretical
Annibale A
(2015)
Quantifying noise in mass spectrometry and yeast two-hybrid protein interaction detection experiments.
in Journal of the Royal Society, Interface
Annibale A
(2009)
Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure.
in Journal of physics A: Mathematical and general
Coolen A
(2009)
Constrained Markovian Dynamics of Random Graphs
in Journal of Statistical Physics
Coolen A
(2009)
Generating functional analysis of complex formation and dissociation in large protein interaction networks
in Journal of Physics: Conference Series
Fernandes LP
(2010)
Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods.
in PloS one
Fruhwirth GO
(2011)
How Förster resonance energy transfer imaging improves the understanding of protein interaction networks in cancer biology.
in Chemphyschem : a European journal of chemical physics and physical chemistry
Kelleher MT
(2009)
The potential of optical proteomic technologies to individualize prognosis and guide rational treatment for cancer patients.
in Targeted oncology