Modeling and analysis of integrated metabolic, proteomic and genetic regulatory networs

Lead Research Organisation: King's College London
Department Name: Mathematics

Abstract

Recent advances in experimental biology enable for the first time the systematic reconstruction of large cellular signaling and regulatory networks. This prompted the birth of `systems biology', which aims to understand the emergence of thelarge scale functional properties of cells from the complex interactions between their molecular components. Achieving this aim requires intensive collaboration between biologists and mathematicians. So far, the mathematical study of complex cellular networks has mainly focused on their topological characterization and evolutionary origin. However, in a separate development, since around 2000 the disordered systems community has been generating powerful new mathematical techniques with which to analyze and solve stochastic processes on complex random graphs in physics and computer science. The aim of this project is to investigate and harvest the potential of transferring these new techniques (in suitably adapted form) to the field of integrated metabolic, proteomic and genetic regulatory networks.

Publications

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Agliari E (2013) Immune networks: multitasking capabilities near saturation in Journal of Physics A: Mathematical and Theoretical

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Agliari E (2013) Immune networks: multi-tasking capabilities at medium load in Journal of Physics A: Mathematical and Theoretical

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Annibale A (2010) Network resilience against intelligent attacks constrained by the degree-dependent node removal cost in Journal of Physics A: Mathematical and Theoretical

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Annibale A (2009) Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure. in Journal of physics A: Mathematical and general

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Coolen A (2009) Constrained Markovian Dynamics of Random Graphs in Journal of Statistical Physics

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Fruhwirth GO (2011) How Förster resonance energy transfer imaging improves the understanding of protein interaction networks in cancer biology. in Chemphyschem : a European journal of chemical physics and physical chemistry