ChELSI: Chemical Engineering Life Science Interface

Lead Research Organisation: University of Sheffield
Department Name: Chemical & Biological Engineering

Abstract

In the United States and countries such as Singapore and Korea, chemical engineers collaborate extensively with biologists at what is termed the Life Science Interface. In the United Kingdom, such collaborations are worryingly few in numbers. We propose to establish a research centre - ChELSI, where Chemical Engineers will work at the Life Science Interface. ChELSI's purpose is to build a centre of excellence in its own right and to reach out to the whole UK chemical engineering community.ChELSI will be based in the Department of Chemical and Process Engineering at the University of Sheffield. At the core of ChELSI will be existing staff from the Biological and Environmental Systems Group bolstered by new appointments - 3 lecturers, 3 PDRAs, 3 PhD students, 2 technicians and administrative support. The University of Sheffield will contribute to ChELSI by providing 1000 m2 of new laboratories, offices and an ideas space . In this bid we seek funds to support the 11 research staff for five years and to provide laboratory equipment and consumables and small amounts of funding to enable pump-priming of external collaborations.Our vision for ChELSI is that it will be focused on problems of relevance to human health. We propose initial projects in the areas of stem cells and regenerative medicine, kidney diseases, reproductive biology and protein aggregation. However the staff resources we propose should be much more broadly oriented and propose that these be in three thematic areas: (1) analytical techniques underpinning - omic measurement (2) multi-scale modelling and (3) metabolic engineering. These individuals will contribute to our exemplar projects, initiate their own activity and provide a vital source of expertise for reaching out to new collaborators. The concept of ChELSI is that it will be outward looking. To ensure success it must bridge to the life science community and the UK chemical engineering community. This concept is embedded in every level of what we plan: from the layout of the new facilities, with its ideas space , to our portal concept, our hub-and-spoke model for use of facilities, our multi-level communications plan and the membership of our advisory panel.At the end of the five years funding sought with this bid, we expect ChELSI to be a thriving centre of excellence for chemical engineering at the life science interface. More than 25 individuals will work in Sheffield with the costs of the lecturers and technicians borne by the University. Further there will be active links to other chemical engineering departments in the UK and beyond where chemical engineers have become involved in life-science work, in part we hope, because of ChELSI. The net result of this collection of engineers taking their skills to another problem set will be added vitality in their discipline in the UK, the emergence of the UK as the lead competitor to the USA in this field and emergence of quantitative systems level analysis as a routine tool in UK life science research.Given the rate of progress in life science tools and knowledge, we argue that if investment is not made now, the UK will not bridge the gap to the US, chemical engineering here will diverge in nature from other leading countries and UK biologists will either not have access to these skills or will have to seek them overseas.

Publications

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Bandalusena H (2010) Creeping flow analysis of an integrated microfluidic device for rheometry in Journal of Non-Newtonian Fluid Mechanics

 
Description The research funded has enabled the establishment of expertise and facilities for advancing analytical techniques underpinning omic characterisations, in particular quantitative proteomics and metabolomics, multi-scale modelling and metabolic engineering, several upstream developments in biomanufacturing impacting on biopharmaceutical, chemical, water, energy and agricultural sectors. These have been used to initiate several projects with life science faculties across the country and beyond, as is evidenced by representative further funding (given elsewhere) that this award has contributed in attracting. It has helped further our interactions with the bio-industry, in particular the bio-pharmaceutical and agricultural sector. The research activities have informed teaching in the Department, resulting in incorporation of life science principles and concepts in chemical engineering curriculum , broadly evidenced by a change in the name of the department from "Chemical & Process Engineering" to "Chemical & Biological Engineering". It has resulted in the establishment of a Masters programme in Biological & Bioprocess Engineering to attract life science graduates to upgrade their education with Chemical Engineering fundamentals. In addition, challenges and concepts in life sciences are taught to undergraduate and post-graduate engineering students in the department to enable and prepare a UK workforce for tomorrow capable of interacting with biologists and addressing the challenges presented by Life Sciences in the Life Science Interface.
Exploitation Route The expertise developed using the grant will impact in the education of chemical engineers who will be trained in the challenges of working in the life science interface, as is required, for example, in the burgeoning bio-manufacturing industry with relevance to a wide variety of sectors, such as healthcare, biopharmaceuticals, agriculture, food, environment, energy, bio-based chemicals, etc. The facilities that this grant has helped establish can be used in developing systems level characterisation of biological systems towards developing an understanding of underlying metabolism and developing processes with impact in several of the sectors mentioned above.
Sectors Agriculture, Food and Drink,Chemicals,Education,Energy,Environment,Healthcare,Pharmaceuticals and Medical Biotechnology

URL https://www.sheffield.ac.uk/cbe
 
Description The grant has been instrumental in bringing the life sciences interface into chemical engineering education and research at Sheffield, which was the primary vision. This is clearly demonstrated by a change in the name of the associated department from "Chemical & Process Engineering" to "Chemical & Biological Engineering", reflecting the various educational and research activities that the department currently focuses on. The facilities and personnel that the grant helped us attract have been instrumental in developing future Chemical Engineers who are well aware of the challenges they need to address in applying their skill sets to find solutions in the life sciences interface. The grant has been instrumental in initiating and establishing collaborations with life scientists and bio-based industry, contributing to the economic competitiveness of the UK. The grant has enabled establishment of 11 academic members of staff (25% of the department) directly working in the Life Science interface, creating economic and societal impact. It has so far enabled attraction of research income to the tune of GBP 80M (~50M directly apportioned to the department, including 8M from Industry) to create economic and societal impact. It has enabled interactions with Life Science Industries, such as Biogen Idec Ltd., Lonza, Medimmune, Pfizer, Syngenta, etc., to spur economic activity in the UK and beyond. It has enabled interactions with Life Scientists in the UK and abroad (for example, Wageningen Uni, Netherlands, UCL Berkley, USA and Vilnius Univertsity, Lithuania, Bharathidasan University, India) for creating impact.
First Year Of Impact 2008
Sector Agriculture, Food and Drink,Chemicals,Education,Energy,Environment,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology
Impact Types Societal,Economic,Policy & public services

 
Description BBSRC ALERT14
Amount £400,000 (GBP)
Funding ID BB/M012166/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 01/2015 
End 12/2015
 
Description Chinese Scholarship Council
Amount £10,000 (GBP)
Funding ID 2009623024 
Organisation Chinese Scholarship Council 
Sector Charity/Non Profit
Country China
Start  
 
Description Engineering new capacities for solar energy utilisation in bacteria
Amount £3,380,116 (GBP)
Funding ID BB/M000265/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 02/2015 
End 12/2020
 
Description Enhanced Biofuel Production via Integrated Microbubble Technology
Amount £932,491 (GBP)
Funding ID EP/N011511/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 01/2016 
End 07/2019
 
Description Marie-Sklodowska Curie Fellowship
Amount € 195,000 (EUR)
Funding ID 661063 - EQUIP 
Organisation Marie Sklodowska-Curie Actions 
Sector Charity/Non Profit
Country Global
Start 05/2015 
End 04/2017
 
Description Sustainable Bioenergy from biomass
Amount £2,000,000 (GBP)
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 11/2013 
End 10/2016
 
Description The Biogenesis, Structure and Function of Biological Membranes
Amount £3,514,959 (GBP)
Funding ID BB/G021546/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 11/2009 
End 02/2015
 
Title Dissolved inorganic carbon speciation in aquatic environments 
Description A method was proposed for the assay of DIC speciation in aquatic environments. 
Type Of Material Biological samples 
Provided To Others? No  
Impact Impact is notable in our research group. Yet to notice impact elsewhere. Likely areas of impact are in Marine science and in algal biotechnology practice. 
 
Title iTRAQ based proteomic methodology 
Description Methodology for quantitative proteomics in microalgae were developed using hydrophobic interaction liquid chromatography (HILIC). 
Type Of Material Biological samples 
Provided To Others? No  
Impact Notable impact has been seen within the research group and department. Yet to see notable changes elsewhere. 
 
Title Seminal fluid protein divergence among populations exhibiting postmating prezygotic reproductive isolation 
Description Despite holding a central role for fertilisation success, reproductive traits often show elevated rates of evolution and diversification. The rapid evolution of seminal fluid proteins (Sfps) within populations is predicted to cause mis-signalling between the male ejaculate and female reproductive tract between populations resulting in postmating prezygotic (PMPZ) isolation. Crosses between populations of Drosophila montana show PMPZ isolation in the form of reduced fertilisation success in both noncompetitive and competitive contexts. Here we test whether male ejaculate proteins deriving from either the accessory glands or the ejaculatory bulb differ between populations using liquid chromatography tandem mass spectrometry. We find more than 150 differentially abundant proteins between populations which may contribute to PMPZ isolation. These proteins include a number of proteases and peptidases, and several orthologs of D. melanogaster Sfps, all known to mediate fertilisation success and which mimic PMPZ isolation phenotypes. Males of one population typically produced greater quantities of Sfps and the strongest PMPZ isolation occurs in this direction. The accessory glands and ejaculatory bulb have different functions and the ejaculatory bulb contributes more to population differences than the accessory glands. Proteins with a secretory signal, but not Sfps, evolve faster than non-secretory proteins although the conservative criteria used to define Sfps may have impaired the ability to identify rapidly evolving proteins. We take advantage of quantitative proteomics data from three Drosophila species to determine shared and unique functional enrichments of Sfps that could be subject to selection between taxa and subsequently mediate PMPZ isolation. Our study provides the first high throughput quantitative proteomic evidence showing divergence of reproductive proteins implicated in the emergence of PMPZ isolation between populations. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
URL http://datadryad.org/stash/dataset/doi:10.5061/dryad.pvmcvdnhw
 
Description China research 
Organisation State Oceanic Administration
Department Third Institute of Oceanography
Country China 
Sector Academic/University 
PI Contribution Initiate collaborative dialogue through project student, resulting in joint publication (no formal collaboration yet).
Collaborator Contribution Initiate collaborative dialogue through project student, resulting in joint publication.
Impact 2 joint publications so far. There has been an initiation of dialogue but no formal collaboration, multi-disciplinary - Engineering and ocean sciences/oceanography.
Start Year 2015