Synthesis of the Palmerolides

Lead Research Organisation: University of St Andrews
Department Name: Chemistry

Abstract

The vast marine ecosystem has become a prolific source of structurally diverse and bioactive secondary metabolites over the last three decades. The biological activities displayed by many of these secondary metabolites is often startling, demonstrating, for example, potent cytotoxic, antibiotic, pesticidal and antifungal properties. Today, there remains a pressing demand for the continual development of new drugs with the onset of antibiotic resistance in bacterial diseases and the problem of multi-drug resistance in cancer treatment. As a result, bioactive marine natural products, with their unique modes of action and potent activities, continue to have great potential as lead compounds for the development of new generation pharmaceuticals. The low natural abundance, however, of many of these compounds isolated from rare marine species requires that alternative means of supply are required to enable further biological evaluation, in which total synthesis continues to provide a powerful solution, while inspiring the development of new synthetic methodology. In conjunction, total synthesis can unambiguously confirm the initial structural assignment of a new natural product, while providing an opportunity to introduce molecular diversity through the design of simplified analogues, which may have more desirable pharmacological properties in terms of efficacy and safety.The Antarctic seas have remained largely unexplored until very recently, due primarily to their extreme isolation and climate. However, they have evolved a largely indigenous population of invertebrate fauna and algae with rich biodiversity which have adapted to the cold and developed unusual chemical defence mechanisms to combat predators. This research programme targets the synthesis of the palmerolides- a family of cytotoxic marine macrolides isolated from the rare Antarctic tunicate Synoicum adareanum collected in the shallow waters surrounding Anvers Island on the Antarctic Peninsula. The parent member of this family, palmerolide A displays significantly increased selectivity for melanoma cancer cell lines. Further biological screening revealed palmerolide A to inhibit vacuolar-ATPase, although the precise mechanism of action remains unknown at present, and demonstrated in vivo activity in the NCI's hollow-fibre assay. As such, palmerolide A has great potential for development as a new cancer therapeutic and a programme of research towards its synthesis and analogues, will alleviate the supply issue providing material for further biological studies, unambiguosly define the absolute structure and serve as a scaffold for the design of analogues for structure activity relationship studies, in order to elucidate the key structural features required for biological activity.

Publications

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Florence GJ (2013) Total synthesis, stereochemical assignment, and biological activity of chamuvarinin and structural analogues. in Chemistry (Weinheim an der Bergstrasse, Germany)

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Florence GJ (2011) Synthesis and stereochemical assignment of (+)-chamuvarinin. in Organic letters

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Florence GJ (2012) Synthesis of the originally proposed structure of palmerolide C. in Chemistry (Weinheim an der Bergstrasse, Germany)

 
Description The palmerolides are a family of 20-membered macrolides isolated from the Antarctic tunicate Synoicum adareanum, which display unprecedented selectivity towards human melanoma cells. We initiated a programme in late 2007 initially targeting the synthesis of palmerolide A. By incorporating all the necessary functional groups and stereocentres in our advanced fragments, the number of post-coupling transformations was essentially minimised, and the C15-C24 subunit is common to other members of the palmerolide family, including palmerolide C. Utilising convergent strategies we developed efficient syntheses of the fully elaborated C1-C14 and C15-C24 subunits. The C1-C14 subunit utilised HWE coupling at C8-C9 and DIPCl asymmetric reduction at C10. For the synthesis of the C15-C24 sulfone we opted to install the C24 vinyl iodide at an early stage in the synthesis and carry this sensitive motif through all the remaining steps which included an ambitious vinylogous Mukaiyama aldol reaction under Felkin-Anh control to install the 1,2-syn motif at C19-C20 which proceeded in excellent yield and with high levels of both regio- and diastereoselectivity. At this stage, following the completed synthesis and stereochemical assignment of palmerolide A by the groups of De Brabander, Nicolaou and Hall, we opted to revise our target and focus on the synthesis of the regioisomeric family member palmerolide C due to its unresolved stereochemistry. In collaboration with the isolation group of Prof Bill Baker (University of South Florida) a series of diastereomeric C7-C14 fragments were prepared for comparison with the naturally-derived degradation fragment and which enabled in part the assignment of the relative and absolute configuration of the C8-C10 stereotriad. With this information in hand, the stereocontrolled preparation of the requisite fully elaborated C1-14 aldehyde was completed in 17 synthetic steps. The Julia-Kocienski olefination of this subunit with C15-C24 sulfone proceeded in excellent yield to install the C14-C17 E,E-diene, this intermediate was progressed to the C1-C24 seco-acid which underwent classical Yamaguchi macrolactonisation to provide the 20-membered macrolide. Deprotection of the silyl groups at C8-C9 has enabled access to the direct precursor which underwent enamide formation at C24 is required to deliver the proposed structure of palmerolide C. Comparsion of the NMR spectra for our synthetic material with the natural product revealed significant differences prompting our reassignment of the proposed initially proposed structure. The completion of the initially proposed structure of palmerolide Cdemonstrates the applicability of our flexible coupling strategy, initially proposed for palmerolide A, using fully elaborated subunits in key couplings. This enables a short endgame strategy of 5 steps and the outcomes were disclosed in Chemistry- A European Journal. Concurrently with the research directed towards the palmerolides the PDRA contributed to an additional project concerned with the synthesis and structure elucidation of chamuvarinin, a unique acetogenin containing an adjacently linked bis-THF-THP ether array. His contribution enabled the confident assignment of the relative configuration of this array and ultimately paved the way for the first total synthesis of this novel metabolite, confirming the absolute configuration and gaining access to further material for biological assays against the parasite T. brucei and its potential as a lead compound in the search for new treatments for West African sleeping sickness. This research was published in Organic Letters in February 2011 and followed by a full paper in Chemistry - A European Journal, detailing a revised synthetic strategy an biological studies.
Exploitation Route Findings related to palmerolide C have helped to resolve structure of this rare metabolite which displays activity towards human melanoma (skin cancer). This is the first synthesis of this framework and sets precedent in its construction.
Chamuvarinin has proven to be a useful template for further medicinal chemistry/chemical biology programmes in particular our own work on African Sleeping Sickness. As part of the original work we have established a medicinal chemistry/chemical biology programme in which we have developed several series of simplified natural product like inhibitors and the most promising display broad spectrum kinetoplastid activity with low mammalian toxicity. In addition we have developed a series of photoaffinity labelling probes that have enabled the specific protein target to be indentified.
Sectors Chemicals,Pharmaceuticals and Medical Biotechnology

 
Description AstraZeneca
Amount £10,500 (GBP)
Funding ID Research Award 
Organisation AstraZeneca 
Sector Private
Country United Kingdom
Start  
 
Description Cancer Research UK
Amount £27,000 (GBP)
Funding ID C1006/A6950 
Organisation Cancer Research UK 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2007 
End 09/2011
 
Description Leverhulme Research Leadership
Amount £959,000 (GBP)
Organisation The Leverhulme Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 02/2012 
End 03/2018