Changing the Synthesis Landscape with Boron at the Helm: from Chiral Organometallics to Assembly Line Synthesis

Lead Research Organisation: University of Bristol
Department Name: Chemistry

Abstract

Chemistry is unique amongst the sciences in that it has the power to constantly rejuvenate itself since it has the ability to study what it also creates. Creating molecules is where the developments in chemistry begin, which ultimately leads to the advancements in society. Within this context, the synthesis of organic molecules is central to many research disciplines from medicine to materials. However, despite substantial progress, the problems and difficulties associated with chemical syntheses severely limit the rate of growth and development of these disciplines. These fields are constrained by what chemists can make easily, rather than by the imagination of the scientists. In order to meet the emerging challenges across new disciplinary boundaries in a rapidly changing scientific landscape we require a step-change in the development of more rapid and robust techniques in organic synthesis.

Our proposal is to essentially 'grow' a carbon chain with specific substituents attached at specific places and with specific stereochemistry, so that so that at the end of the sequence a complex target molecule which may be a natural product, pharmaceutical or synthetic material will be produced essentially in one step. This is a hugely ambitious goal. The 'growth' phase is conducted using a chiral carbanion with a good leaving group attached (a carbenoid) which reacts with a boronic ester to give a homologated (enlarged) boronic ester. Repeating this reaction, using a different carbanion on the new boronic ester enables a second growth step to take place. The growth steps can be likened to adding lego pieces until a model has been created. Such a process has resonance with the remarkable machinery nature has evolved [polyketide synthases (PKS)] in its biosynthesis of polyketides. Indeed, by variation of the carbenoid and its stereochemistry (lego pieces) a diverse range of molecules with specific shape should be accessible thus enabling rapid structure-activity studies on complex molecules.

The boronic ester intermediates are stable organometallic reagents which are easily accessible with control over their shape. We plan to embark on a novel method of activation of these intermediates so that they can be transformed into a much broader range of molecules bearing new functionality. Such novel methodology would significantly expand the landscape of readily available chiral organic molecules.

The (desired) properties of a molecule are defined by its shape and functionality. Being able to control these critical features lies at the heart of chemistry and is what drives much of biological and materials chemistry. We aim to create new tools to enable us to easily synthesise a broad array of molecules with control over their shape and functionality. Our proposed synthesis program will provide an additional new tool to enable science.

Planned Impact

Outside the academic research community we can identify the following users and beneficiaries of the research:
Industry: Pharmaceutical, Agrochemical and Fine Chemicals Industries. These industries are interested in reactions and strategies that provide greater efficiency and selectivity in transformations. They are also interested in new reactions that expand the available chemical space that can be probed by novel molecules as this could lead to new products. Much of the industry is focussed on easily accessible targets and so the space that they fish in becomes increasingly crowded. This proposal aims to address all of these specific issues. The new methodologies will not only lead to a significantly expanded landscape of readily available chiral organic molecules but also greater efficiency and selectivity in the synthesis of complex molecules.
We have a track record in patenting our research discoveries and have filed 8 patents to date. In addition we recently developed a new and much more efficient way of making pharmaceutically relevant heterocycles e.g. morpholines, piperazines, diazepines etc. through the use of Ph2SCH2CH2BrOTf as an alternative to 1,2-dibromo-ethane. We recognised the potential of this work and through Aldrich, the reagent has now become commercially available, thus demonstrating the capability of our group to ensure that discoveries are exploited.
People Skills:
Another key output from the grant will be a cohort of highly skilled and accomplished young researchers, who will have had the opportunity to make contributions and gain expertise in a highly challenging and rewarding area of contemporary science and so support the needs of the academic and industrial sectors. The UK chemical and pharmaceutical industries, who are major contributors to UK wealth, rely on this output. Without support in synthesis training, industrial, academic and societal progress risks stalling in the face of a ferociously competitive global economy.
We take the training of students and post-docs in our group very seriously (this is the pathway towards this impact) and have a high success rate in placing them in industry, government and academia.
Knowledge
In this proposal we have put forward fundamentally new transformations and new concepts which have the potential to open up new fields of research. This could have a significant impact in the field which would result in attracting high quality of individuals from abroad to our research group. This is likely to benefit UK in having a greater pool of highly talented and highly trained scientists that UK plc can potentially recruit from. It will also enhance the quality of our research output.
Collaboration
The extent of collaborations cannot be predicted at this stage as they are dependent on the outcome of the research. We have an extensive track record of past collaborations and will collaborate in the future within Bristol where complementary expertise is required e.g. conformational analysis, DFT calculations (Prof. Jeremy Harvey), NMR (Dr. Craig Butts), and physical organic chemistry (Prof. Guy Lloyd-Jones). New collaborations within the University will be pursued during the course of the grant if they become appropriate e.g. Prof. Chris Willis/Prof. Tom Simpson in biosynthesis studies of certain natural products (alpha 1, mycolactone) and making hybrid natural products by using semi-synthesis and modified PKSs; Dr. Charles Faul, a materials chemist with expertise in the design and synthesis of functional and switchable nanostructured materials and novel liquid crystals and a member of the implementation team of the Bristol Centre for Functional Nanomaterials DTC (specifically managing and expanding industry contacts and applications for the BCFN); Prof Paula Booth (Biochemistry), on investigations of the effects of specific lipid stereoisomers (sulfolipid I) on membrane transport proteins.

Publications

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Armstrong R (2018) Enantiodivergent Synthesis of Allenes by Point-to-Axial Chirality Transfer in Angewandte Chemie International Edition

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Armstrong RJ (2017) Stereodivergent Olefination of Enantioenriched Boronic Esters. in Angewandte Chemie (International ed. in English)

 
Description We have developed an area of research we term "Assembly Line Synthesis". The process involves 3 main phases: (i) methods for introducing boron into molecules, (ii) growth phase where the carbon chain bearing a boronic ester is 'grown' one atom at a time through lithiation-borylation reactions and (iii) termination phase where the boronic ester is converted into other functional groups with high levels of stereocontrol. In each of the three areas we have been highly successful. Highlights of (i) include the first asymmetric Markovnikov hydroboration of unactivated terminal alkenes (JACS, 2017, 9148) and a decarboxylative borylation reaction which shows very broad scope (Science, 2017, 283). Indeed, the latter process was patented and is currently being evaluated for scale-up by industry. It was used recently by Merck to make 200g of a propellane derivative for pharmaceutical investigation (Org. Lett. 2020, 22, 1648-1654).
Highlights of (ii) include the sequenced addition of lithiated benzoates in 'one pot' demonstrating that successive groups could be added to a growing chain with full control of both relative and absolute stereochemistry (Nature, 2014, 183; Scheme 1). Nine iterations could be achieved without purification of any intermediates. Furthermore, through judicious choice of stereochemistry, we were able to create molecules that preferentially adopted linear or helical conformations.
The methodology created has been applied to the synthesis of a broad range of targets and, in almost all cases, the synthetic routes were the shortest and most selective to date, demonstrating the utility of the methodology. These include: faranal (ACIE, 2009, 6317), solandelactone E and F (ACIE, 2010, 6673), erogorgiaene (JACS, 2011, 16798), sertraline (OL, 2011, 5740), botryococcene (JACS, 2012, 7570), pheromones (ACIE, 2012, 2444), giganin (ACIE, 2013, 2503), mating hormone a1 (ACIE, 2014, 4382), filiformin (ACIE, 2014, 5552), kalkitoxin (JACS, 2015, 4398), mycolactone (CEJ, 2015, 13900), clavosolide A (ACIE, 2016, 2498), tatanan A (ACIE, 2016, 15920) stemaphylline (ACIE, 2017, 2127) and baulamycin (Nature, 2017, 436). Furthermore, the reactions of secondary lithiated carbamates with boronic esters lead to tertiary boronic esters with very high er (Nature, 2008, 778; ACIE, 2010, 5142, Scheme 2), a process that has been scaled up to 24 kg by Boehringer in the synthesis of their FLAP inhibitor (OL, 2014, 4360).
By combining lithiation-borylation with protodeboronation we provided a novel strategy for organic synthesis in which there is no history of the molecule's genesis. In order to realize this strategy a new direct method to effect protodeboronation of secondary boronic esters was developed, which involved formation of a boronate complex with a suitable nucleophile followed by oxidation with Mn(OAc)3 in the presence of the hydrogen-atom donor, 4-tert-butylcatechol (Nat. Chem. 2014, 810). Using consecutive lithiation-borylation reactions followed by protodeboronation, smaller fragments could be coupled together, thereby building up long alkyl chains. This strategy was used in a 14-step synthesis of hydroxyphthioceranic acid, a key component of the cell wall lipid associated with tubercolosis.
Highlights of (iii) (Scheme 2) include the conversion of tertiary boronic esters into C-tertiary amines (ACIE, 2011, 1080) and quaternary stereogenic centres (ACIE 2011, 3760), or through protodeboronation (JACS 2010, 17096). In this area we have also developed new stereospecific cross-couplings of secondary and tertiary boronic esters with electron rich aromatics (Nat. Chem, 2014, 584; JACS, 2016, 9521). Through alternative modes of activation, we have also been able to couple pyridines, quinolines, (JACS, 2015, 10958), phenols (ACIE, 2017, 16318), arylacetylenes (ACIE, 2017, 9752), electron-poor aryls (ACIE, 2018, 1082), and benzylic amines (JACS, 2017, 9519).
Asymmetric allylboration is one of the most reliable and important C-C bond-forming reactions in synthesis. However, ?-substituted allyl/crotyl pinacol boronic esters often give low E/Z selectivity (with Z favoured) in reactions with aldehydes. Aggarwal discovered that they could access the rarely-used corresponding allyl borinic esters by reaction of the easily-accessible pinacol boronic ester with BuLi followed by trapping with trifluoroacetic anhydride (TFAA). The intermediate allyl borinic esters not only underwent allylboration with very high E selectivity but their much higher reactivity over standard boronic esters enabled them to be used with much less reactive ketones and ketimines leading to contiguous quaternary centres with perfect stereocontrol (JACS, 2013, 5316; ACIE, 2014, 10992).
Secondary boronic esters are electrophiles. However, we found that addition of an aryl lithium reagent to a secondary boronic ester leads to an intermediate boronate complex that behaved as a chiral nucleophile, reacting with a broad range of electrophiles with inversion of stereochemical configuration (JACS, 2011, 16794; Chem. Sci. 2014, 602). This work has even included stereospecific electrophilic fluorination (JACS, 2015, 10100). This discovery now adds a new, readily available, and configurationally stable, chiral organometallic-type reagent to the arsenal of methods for use in asymmetric organic synthesis.
Exploitation Route Our methodology that we have developed is being used by others to assist in their synthesis of complex molecules in both academia and industry.
Sectors Chemicals,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

URL http://www.chm.bris.ac.uk/org/aggarwal/
 
Description Although it is difficult to pin down precisely, we are aware that our methodology has been applied by Boehringer in the large scale (24 kg) synthesis of their FLAP inhibitor (OL, 2014, 4360). Our decarboxylative borylation reaction is currently being evaluated for scale-up by industry and it was used recently by Merck to make 200g of a propellane derivative for pharmaceutical investigation (Org. Lett. 2020, 22, 1648-1654). Our methodology is being used by research groups world-wide in the course of their total synthesis campaigns: S.-H. Hou, A. Y. Prichina, M. Zhang, G. Dong, Angew. Chem. Int. Ed. 2020, 59, 7848-7856. Z. Lu, X. Zhang, Z. Guo, Y. Chen, T. Mu, A. Li, J. Am. Chem. Soc. 2018, 140, 9211-9218. M. Yang, W. Peng, Y. Guo, T. Ye, Org. Lett. 2020, DOI 10.1021/acs.orglett.0c00074. Y. Linne, A. Schönwald, S. Weißbach, M. Kalesse, Chem. - A Eur. J. 2020, 26, 7998-8002.
First Year Of Impact 2014
Sector Chemicals,Healthcare,Pharmaceuticals and Medical Biotechnology
Impact Types Societal,Economic