Biocatalytic Nanolithography: Nanofabrication of High Chemical Complexity Surfaces
Lead Research Organisation:
University of Manchester
Department Name: Chemistry
Abstract
Living organisms construct a tremendous variety of structures across a range of sizes, from large bones to microscopic cell components in order to carry out their life processes. Despite this variation in size, the assembly of all of these objects ultimately relies on the generation of molecules that are nanometres in scale (a billionth of a metre, or 1/100,000th of the thickness of a human hair). These biological "building blocks", composed of compounds such as sugars and proteins are produced by enzymes, the molecular machinery of all living organisms. In order to generate these complex larger structures, living organisms have developed a range of methods for moving these enzymes to specific locations where the structures need to be formed.
The ability to manipulate and study objects on nanometre scales is called nanotechnology, and is particularly interesting since at this size range, materials display new properties that are radically different from when they exist in their bulk form. By finding ways of harnessing these unusual properties, it is expected that they can be used to create entirely new types of technologies and devices. The basic idea of being able to move enzymes to particular locations as a means of controlling the construction of objects on this scale would therefore be extremely useful if it could be applied by us to assemble highly miniaturised devices, such as electronic components or circuits.
Harnessing enzymes for this purpose is particularly appealing since they are able to conduct a wide range of chemical reactions very efficiently and generate few unwanted by-products. Furthermore, they function under mild conditions and do not rely on rare or toxic materials. In contrast, many of the current techniques used in nanotechnology are derived from the electronics industry are not only limited in the types of chemistry they can achieve due to the harshness of the conditions under which they operate, but are also very power consuming.
Accordingly, the aim of this research project is to use enzymes that are able to promote the formation and deposition of materials to generate nanometre-scale patterns on a variety of surfaces. To achieve this aim, enzymes will be used together with an instrument called a "scanning probe microscope". This instrument uses miniature electrical motors to move a very sharp tip, the "probe" of the instrument, which is only a few nanometres wide. The instrument is also able to control the movement of this probe with nanometre precision. This ability to move and position the probe with such fine control makes it possible to use it to "write" patterns on surfaces. By attaching these enzymes to the tips of these probes, the chemical reactivity of the enzymes can be directed to deposit their materials as nanoscopic patterns. This new method of writing nanopatterns will be further facilitated by developing modified versions of these enzymes so that they will perform efficiently on a scanning probe. For example, they may be modified to deposit a wider range of compounds, or to be more resistant to damage so they may be used for a longer period of time before needing to be replaced.
The materials that are produced will then be tested to determine their electrical properties so that they can then be applied for the construction of miniaturised electronic devices. Furthermore, experiments will be carried out using many scanning probes writing patterns simultaneously, which will demonstrate how this new method of nanofabrication could be used for the mass production of chemically complex miniaturised devices.
The ability to manipulate and study objects on nanometre scales is called nanotechnology, and is particularly interesting since at this size range, materials display new properties that are radically different from when they exist in their bulk form. By finding ways of harnessing these unusual properties, it is expected that they can be used to create entirely new types of technologies and devices. The basic idea of being able to move enzymes to particular locations as a means of controlling the construction of objects on this scale would therefore be extremely useful if it could be applied by us to assemble highly miniaturised devices, such as electronic components or circuits.
Harnessing enzymes for this purpose is particularly appealing since they are able to conduct a wide range of chemical reactions very efficiently and generate few unwanted by-products. Furthermore, they function under mild conditions and do not rely on rare or toxic materials. In contrast, many of the current techniques used in nanotechnology are derived from the electronics industry are not only limited in the types of chemistry they can achieve due to the harshness of the conditions under which they operate, but are also very power consuming.
Accordingly, the aim of this research project is to use enzymes that are able to promote the formation and deposition of materials to generate nanometre-scale patterns on a variety of surfaces. To achieve this aim, enzymes will be used together with an instrument called a "scanning probe microscope". This instrument uses miniature electrical motors to move a very sharp tip, the "probe" of the instrument, which is only a few nanometres wide. The instrument is also able to control the movement of this probe with nanometre precision. This ability to move and position the probe with such fine control makes it possible to use it to "write" patterns on surfaces. By attaching these enzymes to the tips of these probes, the chemical reactivity of the enzymes can be directed to deposit their materials as nanoscopic patterns. This new method of writing nanopatterns will be further facilitated by developing modified versions of these enzymes so that they will perform efficiently on a scanning probe. For example, they may be modified to deposit a wider range of compounds, or to be more resistant to damage so they may be used for a longer period of time before needing to be replaced.
The materials that are produced will then be tested to determine their electrical properties so that they can then be applied for the construction of miniaturised electronic devices. Furthermore, experiments will be carried out using many scanning probes writing patterns simultaneously, which will demonstrate how this new method of nanofabrication could be used for the mass production of chemically complex miniaturised devices.
Planned Impact
This study will employ recombinantly engineered enzymes on scanning probes to develop a new nanolithography method. In doing so, it is intended that the method will enable the fabrication of organically functionalised nanopatterns that would be difficult to achieve using existing methods and be more sustainable. This research will therefore benefit a wide range of parties in academia and industry through the development of new biocatalysts and nanotechnology tools.
Firstly, this research would be relevant to scientists working in surface nanofabrication since current methods of manipulating materials at nanoscopic length scales are relatively limited in terms of the types of materials and surfaces that can be used. Furthermore, the two types of polymers proposed here are amenable to the generation of devices with potential applications in biosensing and electronics. This research would therefore be of interest to materials engineers that are attempting to harness new materials for the construction of miniaturised devices.
In terms of the enzyme engineering, the enzymes that will be developed here will give rise to new synthetic methods, as well as processes that are non-energy intensive and avoid the need for toxic feedstocks (i.e. more sustainable). This research will therefore benefit researchers in the area of applied biocatalysis through the development of new biocatalysts and insights into their application for the synthesis of polymers.
Beyond academic research, the development of this nanofabrication technique would be a significant step towards a low cost "desktop fab" that would allow access to a nanofabrication tool for a wider range of industries and researchers in the micro- (and nano-) machining sectors for the rapid production and prototyping of nanoscale devices, and would be an alternative to the current high cost, harsh and limited fabrication methods derived from the electronics industry.
Similarly, the ability to generate polymers with increased efficiency through the use of enzymes would lead to cost savings during the manufacturing of such materials. This is particularly important as silicones are widely used as components in a variety of areas, from consumer products (e.g. cosmetics, paints, detergents) to industrial applications (e.g. lubricants, coatings, sealants). The use of electrically conducting polyanilines, on the other hand, offers a route towards the production of electronic circuits that are not critically reliant on metals or semiconductors, which may rare or subject to supply insecurity.
More generally, the outcome of this research will contribute to the UK's position as a major participant in the fields of biotechnology and nanotechnology. Research in these areas will cultivate a new generation of scientists and enable the UK to better harness the potential economic and social benefits arising from the life science-nanotechnology interface, in the so-called area of "gold" biotechnology. The sustainable processes developed here will also reduce the environmental impact of human activity, enhancing the UK's green credentials and benefit the wider global community.
By the end of this grant period, we expect to have demonstrated the feasibility of using modified enzymes in conjunction with scanning probe microscopy for nanofabrication, allowing external parties to take our findings forward for wider applications in their respective areas. We will engage the potential end users of our research through publishing our findings in scientific papers and meetings and, where appropriate, through the exploitation of our intellectual property (e.g. patents, consultancy).
Firstly, this research would be relevant to scientists working in surface nanofabrication since current methods of manipulating materials at nanoscopic length scales are relatively limited in terms of the types of materials and surfaces that can be used. Furthermore, the two types of polymers proposed here are amenable to the generation of devices with potential applications in biosensing and electronics. This research would therefore be of interest to materials engineers that are attempting to harness new materials for the construction of miniaturised devices.
In terms of the enzyme engineering, the enzymes that will be developed here will give rise to new synthetic methods, as well as processes that are non-energy intensive and avoid the need for toxic feedstocks (i.e. more sustainable). This research will therefore benefit researchers in the area of applied biocatalysis through the development of new biocatalysts and insights into their application for the synthesis of polymers.
Beyond academic research, the development of this nanofabrication technique would be a significant step towards a low cost "desktop fab" that would allow access to a nanofabrication tool for a wider range of industries and researchers in the micro- (and nano-) machining sectors for the rapid production and prototyping of nanoscale devices, and would be an alternative to the current high cost, harsh and limited fabrication methods derived from the electronics industry.
Similarly, the ability to generate polymers with increased efficiency through the use of enzymes would lead to cost savings during the manufacturing of such materials. This is particularly important as silicones are widely used as components in a variety of areas, from consumer products (e.g. cosmetics, paints, detergents) to industrial applications (e.g. lubricants, coatings, sealants). The use of electrically conducting polyanilines, on the other hand, offers a route towards the production of electronic circuits that are not critically reliant on metals or semiconductors, which may rare or subject to supply insecurity.
More generally, the outcome of this research will contribute to the UK's position as a major participant in the fields of biotechnology and nanotechnology. Research in these areas will cultivate a new generation of scientists and enable the UK to better harness the potential economic and social benefits arising from the life science-nanotechnology interface, in the so-called area of "gold" biotechnology. The sustainable processes developed here will also reduce the environmental impact of human activity, enhancing the UK's green credentials and benefit the wider global community.
By the end of this grant period, we expect to have demonstrated the feasibility of using modified enzymes in conjunction with scanning probe microscopy for nanofabrication, allowing external parties to take our findings forward for wider applications in their respective areas. We will engage the potential end users of our research through publishing our findings in scientific papers and meetings and, where appropriate, through the exploitation of our intellectual property (e.g. patents, consultancy).
Publications
Carnally SA
(2014)
Harnessing catalysis to enhance scanning probe nanolithography.
in Nanoscale
Fruncillo S
(2022)
Lithographic Patterning of Nanoscale Arrays of the Oxidase Enzyme CotA: Effects on Activity and Stability
in Advanced Materials Technologies
Hosford J
(2018)
Parallelized biocatalytic scanning probe lithography for the additive fabrication of conjugated polymer structures.
in Nanoscale
Hosford J
(2014)
A high-throughput assay for arylamine halogenation based on a peroxidase-mediated quinone-amine coupling with applications in the screening of enzymatic halogenations.
in Chemistry (Weinheim an der Bergstrasse, Germany)
Hosford Joseph
(2014)
Enzyme-compatible, high-throughput, and quantitative spectrophotometric assays for arylamine halogenations
in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
Lee IN
(2018)
Large-area Scanning Probe Nanolithography Facilitated by Automated Alignment and Its Application to Substrate Fabrication for Cell Culture Studies.
in Journal of visualized experiments : JoVE
Rani E
(2019)
High-Resolution Scanning Probe Nanolithography of 2D Materials: Novel Nanostructures
in Advanced Materials Technologies
Description | We have demonstrated the main aim of this research: the use of enzymes as catalysts in scanning probe instrumentation to perform nanofabrication under more sustainable, non-energy intensive conditions. |
Exploitation Route | This demonstration of the basic concept can now be expanded to a range of other enzymes and materials. |
Sectors | Electronics,Manufacturing, including Industrial Biotechology |
Description | In the process of developing the main objectives of this project, we also developed some software that enables the alignment of the instrumentation. This software has now been marketed by UMIP: http://www.click2go.umip.com/i/software/Biomedical_Software/afm.html |
First Year Of Impact | 2015 |
Sector | Digital/Communication/Information Technologies (including Software),Other |
Impact Types | Economic |
Description | Biocatalytic Approaches to the Synthetic Manipulation of Silicones |
Amount | £444,992 (GBP) |
Funding ID | EP/S013539/1 |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 01/2019 |
End | 02/2022 |
Description | Biocatalytic Approaches to the Synthetic Manipulation of Silicones |
Amount | £34,022 (GBP) |
Funding ID | EP/S013660/1 |
Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
Sector | Public |
Country | United Kingdom |
Start | 01/2019 |
End | 12/2021 |
Description | British Council Newton Fund Institutional Links |
Amount | £149,933 (GBP) |
Funding ID | 216196834 |
Organisation | British Council |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2016 |
End | 09/2018 |
Description | British Council Newton Fund Institutional Links |
Amount | £93,162 (GBP) |
Funding ID | 172701477 |
Organisation | British Council |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2015 |
End | 09/2016 |
Description | Institutional Strategic Support Fund (ISSF) |
Amount | £49,499 (GBP) |
Funding ID | 105610/Z/14/Z |
Organisation | Wellcome Trust |
Department | Wellcome Trust Centre for Cell-Matrix Research |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 08/2015 |
End | 03/2016 |
Description | MultiUSer equipment for high-throughput, high-content analysis in Industrial and Cellular biotechnology (MUSIC) |
Amount | £277,784 (GBP) |
Funding ID | BB/R000093/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 08/2017 |
End | 08/2018 |
Description | UMRI Pump Priming Fund |
Amount | £31,199 (GBP) |
Organisation | University of Manchester |
Sector | Academic/University |
Country | United Kingdom |
Start | 03/2015 |
End | 08/2015 |
Title | Automated Alignment of Probe Arrays for Large-Area Scanning Probe Nanolithography |
Description | The precision and versatility afforded by scanning probe microscopy has enabled the development of a variety of methods for the facile fabrication of user-defined patterns on a variety of surfaces with nanoscale resolution. Historically, the major limitation of such scanning-probe nanolithography has been the inherently low throughput of single probe instrumentation, which has been addressed by the use of "two-dimensional" arrays of multiple probes for parallelised nanolithography. Key to the successful implementation of such arrays is a means to accurately align them relative to the substrate surface, such that all probes come into contact with the surface simultaneously upon the commencement of lithography. Here, an algorithm for the rapid, accurate and automated alignment of an array is described in the context of polymer pen lithography. This automation enables the alignment of the array of probes within minutes, without user intervention. Subsequent nanolithography of thiols on gold substrates demonstrated the generation of features over large (cm2) areas with high uniformity. Example features were 66.5 ± 9.8 and 71.3 ± 9.3 nm in size across a distance of 1.4 cm, indicating any misalignment as =0.0003°. |
Type Of Material | Improvements to research infrastructure |
Provided To Others? | No |
Impact | This software was subsequently marketed by click2go (http://www.click2go.umip.com/) and published in an RSC Advances paper. |
Title | Algorithm for automated probe array alignment for use with scanning probe nanolithography |
Description | The precision and versatility afforded by scanning probe microscopy has enabled the development of a variety of methods for the facile fabrication of user-defined patterns on a variety of surfaces with nanoscale resolution. Historically, the major limitation of such scanning-probe nanolithography has been the inherently low throughput of single probe instrumentation, which has been addressed by the use of "two-dimensional" arrays of multiple probes for parallelised nanolithography. Key to the successful implementation of such arrays is a means to accurately align them relative to the substrate surface, such that all probes come into contact with the surface simultaneously upon the commencement of lithography. Here, an algorithm for the rapid, accurate and automated alignment of an array is described in the context of polymer pen lithography. This automation enables the alignment of the array of probes within minutes, without user intervention. Subsequent nanolithography of thiols on gold substrates demonstrated the generation of features over large (cm2) areas with high uniformity. Example features were 66.5 ± 9.8 and 71.3 ± 9.3 nm in size across a distance of 1.4 cm, indicating any misalignment as =0.0003°. |
IP Reference | |
Protection | Copyrighted (e.g. software) |
Year Protection Granted | 2016 |
Licensed | Commercial In Confidence |
Impact | Algorithm used by researchers using the scanning probe nanolithography equipment at the University of Manchester |
Title | AFM Multiprobe Alignment Software |
Description | This is software enables the automated alignment of multiprobe arrays on scanning probe microscope systems, which enables reproducible nanolithography by these instruments. |
Type Of Technology | Systems, Materials & Instrumental Engineering |
Year Produced | 2015 |
Impact | The software has been marketed by UMIP. See URL link below. |
URL | http://www.click2go.umip.com/i/software/Biomedical_Software/afm.html |
Description | Visit to Institute of Materials Research and Engineering A*STAR Singapore, Dec 2016 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Visited IMRE to deliver seminar and meet with local researchers at that institution. |
Year(s) Of Engagement Activity | 2016 |