Development of Automated Parallel CO2 Supercritical Fluid Chromatography for Use in Continuous Flow Chemical Synthesis

Lead Research Organisation: University of Cambridge
Department Name: Chemistry

Abstract

There has been a significant shift in focus within the scientific community over the previous few years towards practices that are more environmentally accessible and sustainable, driven largely by increased awareness of the impacts of current practice, governmental legislation and increasing costs of waste disposal (most especially solvents). In the chemistry world there are increasing demands for greater efficiencies, lower solvent use, lower energy consumption and improved processes. Wasteful and time-consuming practices are no longer acceptable, forcing chemists to be more responsible for their actions. The EPSRC has acknowledged the importance of this shift and is actively promoting it through the creation of a series of 'Grand Challenges' including Dial-a-Molecule (100% efficient synthesis) and CO2Chem (utilising CO2 for chemical synthesis).

Unusually, although computer-aided processes and electronic automation have been shown to be effective in other sectors at increasing efficiency and minimising costs, chemistry as a science has been slow on the uptake of new technology designed to assist chemists in routine tasks. In the traditional research environment, this can be seen most clearly by the lack of computer assistance in even the most ordinary of tasks such as titrations, crystallisations, extractions or distillations. When looking at more complex activities such as the identification, optimisation and analysis of new reactions, the situation is even worse. This must change if we are to move chemistry forward. Our research group has consistently pioneered novel methods in chemical synthesis and we are well positioned to deliver a new vision that will lead the way in addressing the present constraints and limitations of how we work in the laboratory today. Our vision of the Lab of the Future is one that breaks away from inefficient traditions and pushes the boundaries of what is possible in chemical synthesis by combining modern-day computing power with the most useful of software developments in order to intelligently combine synthesis procedures.

During the last few years there has been a significant amount of effort expended in the development of new flow synthesis enabling tools, most notably in the area of enhancing reaction capability. At the same time new in-line detection methods are being developed, with desktop NMR spectrometers and in-line miniature MS detectors providing extensive chemical structure data rapidly for compounds produced in flow. Despite the increase in these new enabling tools coming onto the market, there has been little focus on essential continuous downstream processing tools such as work-up cycles and chromatography.

In situations where compounds having similar chemical properties need to be separated, chromatography is usually the method of choice. Researchers are easily able to use semi-preparative and preparative HPLC to separate compounds reasonably quickly. The use of manual column chromatography and semi-automated flash chromatography is commonplace. However for multi-component, complex mixtures there exist no solutions for in-line continuous separation of compounds, especially on an R&D scale.

There are huge conveniences to being able to chromatograph compounds in-line (e.g. in a continuous flow multistep reaction sequence) and it is additionally attractive in terms of many benefits and economies that can be obtained. At the current time, however, there exist no devices that can conveniently achieve this in the research environment; the basis of our proposal therefore is to meet such a need: to design, build and develop the first parallel column SFC separation device for use in-line, at the R&D scale of synthesis, in flow chemistry applications. Utilising CO2 supercritical fluid chromatography enables rapid separations in a sustainable and environmentally friendly manner while fulfilling an unmet need in downstream processing.

Planned Impact

Functional materials such as pharmaceuticals, food preservatives, polymers, paints and pigments are playing an increasingly important role in modern society. As demands for these compounds grow, new methods are being sought for their creation that conform to the present world's requirements for the efficient use of materials while remaining environmentally sustainable. Continuous flow chemical synthesis has received attention as a means by which to achieve the realisation of this ambitious goal. There currently exists a need in flow synthesis, however, for a method that is capable of separating complex product mixtures continuously so that, for example, reactors may be connected in series to achieve efficient continuous synthesis processes. The proposed Parallel Column Supercritical Chromatography (SFC) unit will meet this need by enabling rapid continuous separations while aligning with the national strategy of sustainability.

Currently used batch separation methods for synthesis (e.g. semi-preparative HPLC and flash chromatography) utilise hazardous and toxic eluent solvents with little attention given to the environmental effects of solvent discharge. In addition these solvents are expensive, considerably increasing the operating costs of any chemical manufacturing operation be it lab-sized or on an industrial scale. Using a non-toxic, non-flammable and inexpensive eluent compound such as CO2 will lower these operating costs considerably and not pose a risk if discharged. Our unique design incorporates an efficient recycle loop that we calculate will allow for the reuse over 95% of the feed CO2 supply thus reducing environmental impacts and operating costs even further.

Additionally, further downstream processing is usually required for compounds separated using traditional separation techniques. Energy-intensive processes such as vacuum evaporation are commonly used to remove eluent solvents after chromatography. These procedures act as bottle-necks in any chemical process, consuming considerable amounts of researcher time, both by requiring researchers to monitor tools and creating lengthy pauses between synthesis steps. The proposed SFC unit includes product and waste cyclones that will facilitate instant collection of eluting compounds simply through the release of pressure, enabling skilled researchers to spend more time on other, less routine tasks aimed at advancing progress. For those laboratories in academia and industry that are focussed on drug discovery, this benefit will accelerate developmental progress and potentially enable drug candidates to be brought to the market more quickly.

As a group, we are committed to using open-source computer software and hardware whenever we can; the proposed project is no different. All significant developments made during this project, such as those arising during the design and coding of complex neural networking controls, will be fed back into the open-source community for others to use. The PDRA and graduate students who will be working on this project will gain significant experience in developing multifaceted, self-optimising algorithms, experience that they will take to other sectors when the project reaches completion. This will facilitate the growth of a new breed of control systems where efficiencies are rapidly optimised through intelligent computer control in a wide range of applications, lowering operating costs for businesses and improving environmental effects.

During the final year of this project, we will develop a bench-top SFC unit to the point of commercialisation in collaboration with our UK-based partner companies such as Vapourtec. In addition to prioritising the sourcing of parts, materials and machine-shop hours from Cambridge-based suppliers, this will aid the development of the nascent flow chemistry industry in the UK while supporting local small businesses.

Publications

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Briggs ME (2015) Dynamic flow synthesis of porous organic cages. in Chemical communications (Cambridge, England)

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Chen Y (2018) Photochemical Homologation for the Preparation of Aliphatic Aldehydes in Flow. in The Journal of organic chemistry

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Dingwall P (2018) C-H functionalisation of aldehydes using light generated, non-stabilised diazo compounds in flow. in Chemical communications (Cambridge, England)

 
Description This award ended with a successful delivery of all its stated goals. However, the initial phase of the new equipment configuration and commissioning took longer than expected as it constituted a "first in the world" arrangement of new modular devices. Nevertheless, the choice of supercritical CO2 as a mobile phase ensured speed of processing leading to clean product work-up during isolation. The 5 channel multiplexed injection system facilitated semi-continuous processing needed to match the output from stand-alone flow synthesis equipment. In the way we were able to separate continuously up to 5 different products via a timed sequence of injection. Full proof of concept was demonstrated leading to a publication in an international journal. The current equipment, while still a prototype in concept has highlighted the advantages that accrue during continuous in-line molecule processing.
Exploitation Route It is anticipated that the prototype rig will be used as is or scaled up and commercialised by one or more new or established manufacturers. The commercial rig is expected to further enhance and positively influence the use of flow chemistry and flow synthesis in both research and development labs as well as in production units.
Sectors Agriculture, Food and Drink,Chemicals,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology

URL http://www.leygroup.ch.cam.ac.uk/publications/2010-present
 
Description The prototype equipment developed in this project forms the basis for commercial development and serves a previously unmet need for in-line continuous separation of complex synthesis streams resulting from flow chemistry experiments. In terms of societal and economic impact it constitutes a valuable addition to the developing new world in terms of machine assisted science. Holistic systems approach to the assembly of our functional molecules is becoming more apparent, leading to improved efficiencies and robustness of the processes. The new equipment forms part of a suite of methods used for molecule downstream processing to minimise waste and avoid other labour intensive practices. Our findings have been used to forge stronger links and collaborations with instrument manufacturers and chromatography service providers. Vendors of separation technology are likely now to further develop similar systems for continuous processing and molecule assembly using machine learning techniques and automated reaction feedback control algorithms.
First Year Of Impact 2015
Sector Agriculture, Food and Drink,Chemicals,Digital/Communication/Information Technologies (including Software),Environment,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology
Impact Types Economic

 
Title Data for "Fast Continuous Alcohol Amination Employing a Hydrogen Bor-rowing Protocol" 
Description NMR and HRMS raw data for the communication entitled "Fast Continuous Alcohol Amination Employing a Hydrogen Bor-rowing Protocol" 
Type Of Material Database/Collection of data 
Provided To Others? Yes  
 
Title Data supporting "Continuous preparation and use of dibromoformaldoxime as a reactive intermediate for the synthesis of 3-bromoisoxazolines" 
Description NMR files 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title Data supporting "Photochemical homologation for the preparation of aliphatic aldehydes in flow" 
Description NMR documents for Photochemical homologation for the preparation of aliphatic aldehydes in flow 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
 
Title Data supporting "Three-component assembly of multiply-substituted homoallylic alcohols and amines using a flow chemistry photoreactor" 
Description Dataset related to 'Three-component assembly of multiply-substituted homoallylic alcohols and amines using a flow chemistry photoreactor'. Including 1H, 13C and 19F NMR files (.fid) as well as crystal structure file of compound 4a (.cif). The number of the folders, e.g. 4a, 4b, indicates the compound number in the manuscript. The name of the subfolders, e.g. 1H, 13C, indicates the revelant NMR file. Each individual file is directly generated and exported from Bruker NMR spectrometer. Subfolders could be imported, as a whole, to NMR softwares such as TopSpin or MestReNova, where they could be fully resolved into the corresponding NMR spectrum. 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
 
Title ESI from Chemoselective Continuous Ru-Catalyzed Hydrogen-transfer Oxidation of Secondary Alcohols 
Description Supplementary information data for working article entitled: Chemoselective Continuous Ru-Catalyzed Hydrogen-transfer Oxidation of Secondary Alcohol. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title ESI from Rapid Continuous Ru-Catalysed Transfer Hydrogenation of Aromatic Nitriles to Primary Amines 
Description Supplementary information for the working paper Rapid Continuous Ru-Catalysed Transfer Hydrogenation of Aromatic Nitriles to Primary Amines 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title NMR data for Continuous flow hydration of pyrazine-2-carbonitrile in a manganese dioxide column reactor 
Description NMR data 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title Research data supporting "A Parallel Column Supercritical Fluid Chromatography System for Continuous Purification" 
Description The data is twofold. First is the individual chromatograms of each experiment highlighted in the publication. Second is the NMR spectra of the fractions separated during the experiments. 
Type Of Material Database/Collection of data 
Year Produced 2016 
Provided To Others? Yes  
 
Title Research data supporting "C-H Functionalisation of Aldehydes using Light Generated, Non-Stabilised Diazo Compounds in Flow" 
Description Experimental data, including IR, mass spec, NMR, and UV-Vis 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
 
Title Research data supporting "Diastereoselective synthesis of functionalized indolines using in situ generated allyl boronic species" 
Description NMR data and IR data 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title Research data supporting 'A New Versatile Route to Unstable Diazo Compounds via Oxadiazolines and Use In Aryl-Alkyl Cross-Coupling Reactions' 
Description This data contains a .zip file of the NMR spectra for the compounds (in .mnova format, to be opened in MestReNova) described in the Supplementary Information. It also contains a .pdf copy of the Supplementary Information, which contains the experimental details and full characterisation data (NMR, IR, HRMS) of all compounds produced in this publication. A .xlsx file is provided which contains the raw FlowIR data for showing the presence of the reactive intermediate, 4-diazotetrahydropyran. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title Research data supporting [Unveiling the role of boroxines in metal-free carbon-carbon homologations using diazo compounds and boronic acid] 
Description By means of computational and experimental mechanistic studies the fundamental role of boroxines in the reaction between diazo compounds and boronic acids was elucidated. Consequently, a selective metalfree carbon-carbon homologation of aryl and vinyl boroxines using TMSCHN2, giving access to TMSpinacol boronic ester products, was developed. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title Supplementary data for Preparation of homoallylic amines via a three-component coupling process 
Description Supplementary data for Preparation of homoallylic amines via a three-component coupling process 
Type Of Material Database/Collection of data 
Provided To Others? Yes  
 
Title Supporting research data for "One-Pot Acid-Catalyzed Ring-Opening/Cyclization/Oxidation of Aziridines with N-Tosylhydrazones: Access to 1,2,4-Triazines" 
Description Characterisation data for all compounds synthetised and described in the manuscript. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
 
Title Supporting research data for "Visible-Light-Mediated Annulation of Electron-Rich Alkenes and Nitrogen-Centered Radicals from N-Sulfonylallylamines: Construction of Chlorinated Pyrrolidine Derivatives" 
Description Characterisation data for all compounds synthetised and described in the manuscript. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
 
Description ONE FLOW 
Organisation European Commission
Department Future and Emerging Technologies
Country Belgium 
Sector Public 
PI Contribution Part of an 8 European University network. We provided the our own in-house developed software for the control of chemical reactors across geographical and time domains.
Collaborator Contribution Application of our software to various chemical problems.
Impact A. Greb, J-S. Poh, S. Greed, C. Battilocchio, P. Pasau, D. C. Blakemore and S. V. Ley A Versatile Route to Unstable Diazo Compounds via Oxadiazolines and their Use in Aryl-Alkyl Cross-Coupling Reactions Angew. Chem. Int. Ed. 2017, 56, 16602 -16605. D. J. Ritson, C. Battilocchio, S.V. Ley and J. D. Sutherland Mimicking the surface and prebiotic chemistry of early Earth using flow chemistry Nature Communications 2018, 9, 1821 D. E. Fitzpatrick, R. J. Mutton and S. V. Ley In-line separation of multicomponent reaction mixtures using a new semi-continuous supercritical fluid chromatography system React. Chem. Eng., 2018, 3, 799-806. Y. Chen, D.C. Blakemore, P. Pasau and S.V. Ley Three-Component Assembly of Multiply Substituted Homoallylic Alcohols and Amines Using a Flow Chemistry Photoreactor, Org. Lett. 2018, 20, 6569-6572 P. Dingwall, A. Greb, L. N. S. Crespin, R. Labes, B. Musio, J.S. Poh, P. Pasau, D. C. Blakemore and S. V. Ley C-H functionalisation of aldehydes using light generated, non-stabilised diazo compounds in flow, Chem. Comm. 2018, 54, 11685 - 11688 D.E. Fitzpatrick, T. Maujean, A.C. Evans, and S.V. Ley Across-the-World Automated Optimization and Continuous-Flow Synthesis of Pharmaceutical Agents Operating Through a Cloud-Based Server, Angew. Chem. Int. Ed. 2018, 57, 15128 -15132
Start Year 2017
 
Company Name NEW PATH MOLECULAR RESEARCH LTD 
Description New Path is chemistry driven: no biological mechanism has an impact on human health until a molecule is discovered to disrupt it It brings the best and most innovative chemistry to lanthipeptide discovery with a focus on drug resistant gram-negative bacteria and cancer therapy. They believe the impact that can be made by the best, most creative chemists, supported by the most sophisticated machine assisted chemistry tools has yet to be explored. 
Year Established 2015 
Impact Too early to say as yet.
Website https://www.newpathmolecular.com