Simulations for Future X-ray Free electron Lasers

Lead Research Organisation: University of Strathclyde
Department Name: Physics

Abstract

When a beam of fast, high energy electrons are injected into an undulating magnetic field (often called a 'wiggler'), they are forced to oscillate perpendicular to their direction of propagation and to emit light at the electron oscillation frequency. As this mixture of electrons and light propagates along the wiggler, the electrons begin to 'bunch' at the same wavelength as the light and act in unison to generate high brightness coherent light. When this happens it is called a Free Electron Laser (FEL). When the electrons are accelerated to speeds just below the speed of light, the electrons can emit X-ray light. This has a very short wavelength and can be used to make images of very small objects such as atoms. If the X-rays can be made into very short pulses, they can also take images of atoms without blurring - just like using the flash on a camera in a dark room.

Most computer codes that simulate this FEL interaction make simplifications in the process which allows faster computation times. However, these simplifications mean that some information about the process is lost. This lost information is necessary if one wants to simulate e.g. very short light pulse generation. This proposal includes the lost information in a computer simulation code 'PUFFIN' which allows new methods to be investigated to improve the quality of the light emitted by the FEL. In addition, we will connect up PUFFIN with other simulation codes that allow the full FEL to be modelled from the start of the electron acceleration through to their exit at the end of the FEL. These 'start-to-end' simulations are important as they can allow different electron accelerators to be tested as drivers of the FEL, and can model their different characteristics. One such accelerator of current interest is the plasma accelerator which can be much smaller than current Radio-Frequency accelerators used to drive FELs. Use of plasma accelerators would significantly reduce the cost of FELs and make then more accessible to a wider group of scientists. PUFFIN is useful as it can model electron beams from plasma accelerators much better than other simulation codes.

Keeping the extra information contained in the PUFFIN simulations, and linking it up with other simulation codes, results in a powerful FEL simulator that can model effects such as very short pulse generation and plasma accelerator drivers of FELs. This ability opens up many new areas for research to improve the light output from FELs.

With these improvements would come the ability to investigate new areas of science that have until now been closed to us. These areas differ hugely, from observing how viruses and potential new drugs penetrate the membranes of living cells to creating conditions in the laboratory similar to those at the centre of Jupiter and Saturn.

The improvements to simulating the FEL process using PUFFIN have the potential to have a real and large impact on such fundamental scientific knowledge. Furthermore, this fundamental knowledge can play a crucial role in developing new products and processes that will help economies, society and the environment.

Planned Impact

The development of the Free Electron Laser modelling software PUFFIN and its linking to other accelerator simulation software, will enable researchers to explore new methods to greatly improve FEL output quality. Light-source facility providers and their users will benefit from these improvements. This benefits scientific researchers and some commercial interests in the shorter term, with potentially longer term societal and economic benefits.
We see three main beneficiaries:

1) Light source facility providers
With the first generation of FEL light sources now on-line for users, there is significant research being conducted by the PI's group and others, towards improving their output qualities. Those facilities able to provide such improved output will inevitably attract the high research impact users who are able to utilise the output for world-first experiments. With no short wavelength FEL facility in the UK, the opportunity exists for the UK to skip the first generation FEL facilities and to invest in a facility with these improved output qualities, or perhaps with the reduced costs that a plasma accelerator driven FEL may offer. The combination of new methods for achieving such results, together with the advanced FEL modelling capability detailed in this proposal, can direct and inform the underpinning experiments and later designs that would enable the UK to build such a second generation FEL facility.

2) Users of light sources (both for research and industrial uses)
The current users of short wavelength FEL facilities are multifarious. The research proposed here would help enable X-ray FEL source development which would impact at least two of the EPSRC 'Physics Grand Challenges': Emergence and Physics Far From Equilibrium (creation and properties of warm dense matter), Understanding the Physics of Life (3D imaging of in-vivo biological samples at the atomic and molecular scales and Synthetic Biology) and several themes including: Digital Economy (understanding magnetisation at the electronic level); Energy (underlying dynamical processes in inertial confinement fusion); . Healthcare Technologies (understanding functional processes at cell membranes leads to basis for the development of new medicines); and Manufacturing the Future (improved silicon wafer lithography and Catalysis). The FEL is an instrument that enables the exploration of matter and its functioning, at a ubiquitous fundamental level that has previously been inaccessible. This ability has a significant potential impact in diverse EPSRC research infrastructure. The development of the software tools proposed here will improve FEL output, so opening up further and digging deeper into, existing fields of investigation.

An FEL in an industrial context will be a significantly different beast from that in a research environment. Their design will require exhaustive simulation studies that examine the statistical nature of the output due to plant fluctuations. Some aspects of the FEL interaction for such facilities may not be modelled correctly by current simulation codes and will require modelling by codes such as Puffin to confirm or otherwise, that output remains within specification. The PI is currently beginning a commercially confidential collaboration with a large industrial company with a multi-billion pound turnover, to investigate such issues.

3) Beneficiaries of light source research
Given the broad range of science that FELs cover, the potential benefits to wider society can be significant. Examples of potential societal and economic impact range from energy generation by internal confinement fusion to the development of new pharmaceuticals. In 10-50 years, new manufacturing methods, products, pharmaceuticals and the way in which some aspects of society functions, will undoubtedly be able to be traced back to discoveries made as a result of research conducted using short-wavelength Free Electron Lasers.

Publications

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Bonifacio R (2017) Design of sub-Angstrom compact free-electron laser source in Optics Communications

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Brown M (2017) An extended model of the quantum free-electron laser in Optics Express

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Campbell L.T. (2017) Wide bandwidth, frequency modulated free electron laser in Proceedings of the 38th International Free-Electron Laser Conference, FEL 2017

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Campbell LT (2019) Frequency modulated free electron laser. in Optics express

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Garcia B (2016) Method to generate a pulse train of few-cycle coherent radiation in Physical Review Accelerators and Beams

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Henderson J (2016) Modelling elliptically polarised free electron lasers in New Journal of Physics

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Henderson J (2015) Free electron lasers using 'beam by design' in New Journal of Physics

 
Description High Performance Computing software has been developed to allow the modelling of coherent X-ray light sources - the Free electron Laser.
Exploitation Route The software is now being used in the design of new facilities in the UK, USA, The EU and China.
Sectors Chemicals,Digital/Communication/Information Technologies (including Software),Energy,Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description While the software developed under this grant is now beginning to be utilised in on-going FEL facility designs, the capability that the software offers is leading other international researchers at Stanford and in Europe to imagine processes that previously they had not considered, and which could significantly improve FEL output towards its theoretical limit. In particular, a joint PhD research programme between Stanford and Strathclyde has been jointly funded to allow exploration of such ideas. Ultimately, the fruits of this research can yield new FEL output which will allow the users of the light to conduct novel research across the natural sciences. To these ends, the Research Co-I is visiting Stanford in March 2017 to develop these ideas. At the same time, the PI has been discussing and meeting with colleagues at DESY, Hamburg, Uppsala University, Sweden and Bec University, Hungary methods to generate single-cycle FEL output in the hard X-ray. Such output can only currently be modeled using the softwrae developed by this grant. Recent experimental progress has been made internationally at the large-scale design of the SwissFEL X-ray FEL user facility (£225 Million) to incorporate design details and methods described only able to be modelled correctly by the developed software. Design changes are currently being implemented at the facility and should have direct impact for users of the SwissFEL facility before 2020.
First Year Of Impact 2017
Sector Chemicals,Digital/Communication/Information Technologies (including Software),Energy,Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology
Impact Types Societal,Economic

 
Description HPC requirements for accelerator strategy of STFC
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
 
Description International Strategic Partnership PhD position
Amount £30,000 (GBP)
Organisation University of Strathclyde 
Sector Academic/University
Country United Kingdom
Start 10/2017 
End 10/2020
 
Description Project Proposal for HPC Access to JURECA
Amount € 58,500 (EUR)
Funding ID HHH20 
Organisation John von Neumann Institute for Computing 
Sector Academic/University
Country Germany
Start 11/2015 
End 11/2016
 
Title Designing Future X-ray FELs 
Description "Powerpoint and pdf files of content presented and discussed at the Workshop: Designing Future X-ray FELs, Daresbury Laboratory, UK. The Free Electron Laser is a unique source of coherent radiation, able to operate into the hard X-ray and opening up new windows of scientific exploration. However, X-ray FELs are still in the first stages of their development with orders of magnitude improvements still achievable before theoretical limits are reached. Many new ideas to improve FELs towards these limits are being proposed. They can be difficult to model analytically and require significant numerical modelling, often requiring the use of many different codes and High Performance Computing. This workshop will bring together those proposing the new ideas and the numerical code developers to examine the state-of-the-art and find new ways forward." 
Type Of Material Database/Collection of data 
Year Produced 2016 
Provided To Others? Yes  
Impact
 
Title Parallel Unaveraged Fel INtegrator (Puffin) Free Electron Laser simulation software 
Description "This software simulates the Free Electron Laser interaction using a minimal number of approximations. Puffin (Parallel Unaveraged Fel INtegrator) simulates a Free Electron Laser (FEL). Puffin is a massively parallel numerical solver for an unaveraged, 3D FEL system of equations, and is written mostly in Fortran 90, using MPI and OpenMP. Software held in a Zenodo-GitHub archive" 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact
 
Description Stanford simulations collaboration. A PhD position has been funded and filled from 1 October 2017 under an International Strategic Partners (ISPs) Joint PhD Cluster award. 
Organisation Stanford University
Department SLAC National Accelerator Laboratory
Country United States 
Sector Public 
PI Contribution As stated in our letter of collaboration to SLAC (NLCTA facility): "As part of this collaboration we can offer access to our computational simulation suite of accelerator and FEL simulation codes under development at Strathclyde and Daresbury. This suite is ideally suited to the modelling and testing of novel concepts involving complex electron beam structures such as those currently being used at NLCTA."
Collaborator Contribution It is part of SLAC's own center mission to examine challenging scientific questions through the development of novel concepts and experimental techniques for controlling electron beams and for reaching new frontiers in modern FEL science. As such, there is mutual benefit in close collaboration on the shared goals of enhancing and expanding FEL capabilities. As stated by SLAC in their letter of collaboration: "We look forward to an exciting collaboration between SLAC, Daresbury Laboratory and the University of Strathclyde in the development of potentially powerful new FEL concepts and techniques."
Impact Ongoing research towards new methods. This resulted in a joint publication: https://doi.org/10.1103/PhysRevAccelBeams.19.090701
Start Year 2015
 
Title FXFEL 
Description The FXFEL project contains the definition of a standard, intermediate format for accelerator (specifically, FEL) simulation codes, and scripts to convert data output from various accelerator codes to and from this format. This enables an s2e framework which is extensible to other codes without too much effort. Other FXFEL software was developed in Python to enable Puffin to operate with other existing software which models other systems in a FEL facility design such as RF accelerators. A visualisation system was also developed using the Visit package to enable remote viewing from the HPC. The standard format is in hdf5, and contains vizSchema metadata for compatibility with Visit. See the manual for a full spec of the format. Currently supported codes are Astra Elegant VSim Puffin Genesis 
Type Of Technology Software 
Year Produced 2017 
Open Source License? Yes  
Impact This software allows a start-to-end simulation of light sources 
URL http://www.xrayfels.co.uk
 
Title The Puffin software package 
Description The core software developed was the FEL simulation code Puffin https://zenodo.org/record/376349#.WqarkufLg2w . This code was developed in Fortran 95 and enhanced to run on HPC facilities using OpemMP and MPI. 
Type Of Technology Physical Model/Kit 
Year Produced 2016 
Impact The software is currently being released to and used by facilities which are designing billion-dollar scale facilities such as LCLS-II at Stanford and at other experimental facilities such as the LUX plasma-accelerator test facility at DESY, Hamburg. 
URL https://zenodo.org/record/376349#.WqarkufLg2w
 
Description Free Electron Laser modelling workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This is an international workshop which I conceived and Chair. Top international researchers are attending from the major national facilities in Europe, Japan the USA and include strategic international partners of Strathclyde.
Year(s) Of Engagement Activity 2016
URL http://www.xrayfels.co.uk/