Catalytic generation and harnessing of reactive intermediates

Lead Research Organisation: Queen Mary University of London
Department Name: Sch of Biological and Chemical Sciences

Abstract

Reactive chemical intermediates are short-lived and high-energy molecules. Whilst it is inherently demanding to exploit the high levels of reactivity of these species, the potential benefits are compelling. Great opportunities are afforded to conduct powerful new chemical and biological processes, with applications in medicine and materials development amongst others. The goal of this proposal is to provide new methods to harness reactive intermediates and hence facilitate reactions of immense utility.

We will focus on intermediates called arynes; molecules in which one of the three carbon-carbon (C-C) double bonds in a benzene ring has been replaced with a C-C triple bond. Incorporating this triple bond causes the ring to become highly strained and thus highly reactive. Arynes are extremely useful as they enable rapid generation of complex benzene ring-containing products that are common in pharmaceuticals, agrochemicals, materials and dyes.

Despite recent advances, methods for an ideal scenario whereby arynes are prepared using a catalyst - a small amount of a substance that promotes a reaction but is not consumed and can thus be recycled - are extremely rare and no general procedure exists. As a result, our long term goal will be to develop a general strategy for catalytic aryne synthesis that also exploits abundant chemicals. There are myriad potential benefits, from the development of new chemical reactions for application in healthcare and manufacturing, to the environmental issues of reduced waste production and the use of more plentiful starting materials.

One example of a cheap bulk chemical for this process is phenol (a benzene ring with an oxygen atom attached), with 60,000 commercially available analogues also offering great potential for structural diversification. By attaching an activating group to the oxygen, we will investigate strategies that enable the proximal addition of a catalyst onto the benzene ring. This catalyst can then interact with the adjacent activating group to aid elimination of the two species from the ring, producing an aryne. The catalyst will then be free to add to another activated phenol ring and thus the cycle is established.

We will also look to subsequently exploit the reactivity of arynes in demanding reactions, such as manipulating the ubiquitous carbon-hydrogen (C-H) bond. Breaking a particular C-H bond and replacing that hydrogen with another atom is extremely desirable, as it means valuable compounds can be made directly from cheap hydrocarbon materials. However, this process is very difficult due to the strength of the C-H bond and most progress has been made using metal catalysts that can be expensive and toxic. Here we will utilise the high reactivity of arynes to develop new complementary metal-free methods for selective C-H bond breaking, involving an initial hydrogen ion transfer from the hydrocarbon compound onto the aryne. This novel process results in two oppositely charged molecules, and we propose that via the recombination of these charges, a new C-C bond will be made. Studies into hydrogen ion transfer onto an aryne will commence with systems where the two components are in the same molecule, tied together in close proximity to aid the reaction. As our understanding increases, we will see whether they can be part of different molecules, which is anticipated to be more challenging. Crucially, we have a preliminary result to support this unique concept.

This research area has been chosen because arynes enable rapid construction of useful complex molecules. Developing these new methods will enable chemists to make drug, polymer, dye and agrochemical compounds more efficiently, and maybe even prepare molecules that are currently inaccessible. These advances can benefit wider society through the development of drugs to treat illnesses, herbicides and pesticides to improve global food production and by harnessing more sustainable chemical feedstocks.

Planned Impact

Within academia the research described in this proposal will be of fundamental utility to synthetic chemists. These new processes will provide enabling methods for the construction of highly functionalised aromatic and heteroaromatic rings, which are not only central to organic synthesis, but are also key fragments within medicinal agents, polymer materials and natural products. It follows that related disciplines such as medicinal, materials and biological chemistry will be interested in elements of the research. The more mechanistic aspects of the work centre on transition metal catalysis and hydride transfer, which are likely to interest organometallic and computational chemists respectively. Through the engagement of academics in these allied areas, new catalyst systems and applications beyond the scope of this specific research programme will be developed.

Away from academia, the main impact of this research will be realised in the pharmaceutical, agrochemical and fine chemicals sectors. The new routes to heterocycles and functionalised aromatic systems proposed here should enable more efficient access to these important fragments for drug design and the probing of biological systems. Benefits to the manufacturing sector are envisaged due to the catalytic and C-H arylation processes that should allow cheaper and more sustainable hydrocarbon feedstocks to be exploited. Metal-free C-H arylation processes will also be particularly attractive to the industrial sector as a result of reduced costs and toxicity. In addition to the intellectual and economic gains to UK academia and industry, it follows that these benefits will eventually impact upon the health and wellbeing of society in general. For example, applications in the agrochemical arena have potential to impact upon national and global food production, as the development of new herbicides and pesticides should augment current crop output.

Close consultation with industry will ensure that specific synthetic requirements are addressed and will also enable the chemistry to be tailored to areas that are considered to be of fundamental importance to an intended end-user. The applicant has a number of existing links to industry, such as Syngenta, and will look to build upon these whilst also establishing new partnerships. Dissemination of results will occur predominantly through peer-reviewed publication in high quality journals, whilst attendance at conferences with a significant industrial presence, as well as existing links between QMUL and partner institutions, will aid the founding of collaborations. Commercially viable results will be exploited through the QMUL Business Support Office and QM Innovation.

Another important aspect of the fellowship relates to my development as an academic and a leader. Realisation of my personal objectives will result in the foundations of an internationally recognised research profile that presents further high-impacting research avenues on projects outside of this proposal. To this end I have significant experience in the identification and development of research programmes in the areas of catalysis and organic synthesis. It is also my aim to provide a rigorous and stimulating environment in which co-workers (PDRA, Ph.D., Master's students) will be trained as highly skilled scientists, thus impacting upon the futures of UK academia and chemical industry. Furthermore, the students will learn key skills such as critical-thinking and time management that will be directly transferable to non-academic professions. Elsewhere, engagement in public outreach activities offers an invaluable opportunity to impact upon the public perception and understanding of science, as well as encouraging interest amongst young people. To this end the applicant has received media training and created podcasts for the Oxford chemistry website and has experience of coordinating a number of departmental public open days.

Publications

10 25 50
 
Description We have successfully demonstrated hydride transfer onto arynes, one of our key research hypotheses. This means that we can selectively break a strong carbon-hydrogen bond (the most common bond within all organic molecules) by transferring it onto a reactive chemical species called an aryne, allowing for a new bond to be made to the original carbon atom and thereby constructing more complex molecules. Having verified this hypothesis we can now move onto the next stage of our proposal, namely studying the formal insertion of arynes into carbon-hydrogen bonds, which we propose proceeds by a two-step process, the first of which is hydride transfer onto an aryne.
Elsewhere we have also used the reactive aryne species to develop small models for probing the mechanism of biological processes involving NAD(P)H; a biological molecule found in approximately 1 in 6 enzymatic reactions. We have also used arynes to shorten the number of steps required to make a number of different biologically active small molecules. Finally, we have started to investigate applications of our research within materials chemistry, with a view to developing new materials for more efficient battery technologies.
All of our research findings have been published in leading international chemistry journals and we are currently working on developing these studies for other transformations.
Exploitation Route The methodology developed in our research will be of interest to organic and medicinal chemists, who can use the new methods to synthesise different target molecules (e.g. natural products, pharmaceuticals, agrochemicals, biological markers/probes etc.). Other aspects of our work are being used by materials scientists, who are particularly interested in larger and predominantly flat molecules bearing multiple fused aromatic rings that we have prepared. This has applications in organic electronics and new solid-state battery technologies.
Sectors Chemicals,Energy,Pharmaceuticals and Medical Biotechnology

URL https://joneschemistry.wordpress.com/publications/
 
Description Postgraduate training course for HPLC users, in conjunction with Hichrom
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
 
Description Design and assessment of solid-state alkali metal-ion conductor 1D channelled framework materials (EPSRC CAM-IES Network grant)
Amount £124,987 (GBP)
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 12/2019 
End 11/2020
 
Description EPSRC ECR Capital Equipment Call (Internal QMUL)
Amount £14,800 (GBP)
Organisation Queen Mary University of London 
Sector Academic/University
Country United Kingdom
Start 03/2019 
End 12/2019
 
Description Postgraduate Research Fund
Amount £1,000 (GBP)
Funding ID NA 
Organisation Queen Mary University of London 
Sector Academic/University
Country United Kingdom
Start 08/2017 
End 08/2017
 
Description Royal Society of Chemistry Undergraduate Summer Bursary
Amount £1,680 (GBP)
Organisation Royal Society of Chemistry 
Sector Charity/Non Profit
Country United Kingdom
Start 07/2021 
End 08/2021
 
Description Royal Society of Chemistry Undergraduate Summer Bursary
Amount £1,680 (GBP)
Organisation Royal Society of Chemistry 
Sector Charity/Non Profit
Country United Kingdom
Start 07/2019 
End 08/2019
 
Description Royal Society of Chemistry Undergraduate Summer Research Bursary
Amount £1,680 (GBP)
Organisation Royal Society of Chemistry 
Sector Charity/Non Profit
Country United Kingdom
Start 06/2016 
End 08/2016
 
Description Royal Society of Chemistry Undergraduate Summer Research Bursary
Amount £1,680 (GBP)
Organisation Royal Society of Chemistry 
Sector Charity/Non Profit
Country United Kingdom
Start 07/2018 
End 08/2018
 
Description Biological Testing 
Organisation University of Huddersfield
Department School of Applied Sciences Huddersfield
Country United Kingdom 
Sector Academic/University 
PI Contribution Conducted novel synthetic organic chemistry research to develop new method to 3D-heterocyclic fragments.
Collaborator Contribution Tested a selection of the products against a range of cancer cell lines to assess biological properties.
Impact Paper/publication. Aryne-Mediated Arylation of Hantzsch Esters: Access to Highly Substituted Aryl-dihydropyridines, Aryl-tetrahydropyridines and Spiro[benzocyclobutene-1,1'-(3',4'-dihydropyridines)]. Multidisciplinary: synthetic chemistry, computational chemistry & biology
Start Year 2018
 
Description Carbon Nanotube Junctions 
Organisation Queen Mary University of London
Department School of Biological and Chemical Science QMUL
Country United Kingdom 
Sector Academic/University 
PI Contribution Academic input and synthesised organic linker
Collaborator Contribution Palma research group (at QMUL) are experts with CNTs and posed initial question of how to control CNT junctions
Impact Paper published: ChemPlusChem, 2019, 84, 1235 (https://onlinelibrary.wiley.com/doi/full/10.1002/cplu.201900151)
Start Year 2018
 
Description Computation chemistry 
Organisation Queen Mary University of London
Department Department of Chemistry and Biochemistry
Country United Kingdom 
Sector Academic/University 
PI Contribution Conducted novel synthetic organic chemistry research
Collaborator Contribution Modelled the organic chemistry to provide insight into the reaction mechanism of the new transformations.
Impact 2 x papers and more work to be communicated. Aryne-Mediated Arylation of Hantzsch Esters: Access to Highly Substituted Aryl-dihydropyridines, Aryl-tetrahydropyridines and Spiro[benzocyclobutene-1,1'-(3',4'-dihydropyridines)]. Multidisciplinary: synthetic chemistry & computational chemistry
Start Year 2017
 
Description Covalent Organic Frameworks for alkali metal ion transport 
Organisation Queen Mary University of London
Department School of Engineering and Materials Science
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaboration between 3 disciplines; chemistry, materials and physics. Provided academic discussions and hypotheses. Supervise synthesis of different organic linkers. Co-supervised postdoctoral student on this project, and 1 x BSc project student. Co-supervise current PhD student on this project
Collaborator Contribution Helped develop project, use our organic linkers to synthesise the framework materials and then physical techniques to analyse properties.
Impact Received grant funding (£124,987 fEC) for postdoctoral researcher from EPSRC CAM-IES Network, which has now finished. Also awarded synchrotron beam time in France (ILL) for May 2020 & March 2021 to analyse the material outputs from the project. PhD studentship awarded from China Scholarship Council to continue this project (start date Oct 2021).
Start Year 2019
 
Description European Lead Factory 
Organisation European Lead Factory
Country European Union (EU) 
Sector Public 
PI Contribution One of my PhD students was invited to attend and present at the European Lead Factory Annual Chemistry Learnings and Achievements Meeting on 6-7 November. Over 75 participants from Europe, including nineteen external early career researchers, were invited to join the two-day conference at the Janssen Pharmaceutica Campus in Beerse, Belgium.
Collaborator Contribution The European Lead Factory (ELF) acknowledges the need for open exchange between researchers with different professional backgrounds and puts a focus on the career development of young scientists. Therefore, the European Lead Factory annually invites young talented EU Lead Factory chemists from participating small and medium-sized enterprises (SMEs) and academic institutions to a so-called Learnings and Achievements meeting, where they can present their scientific work, interact with colleagues and liaise with representatives from participating established pharmaceutical companies and SME partners.
Impact Indirectly as a result of this meeting we have begun a collaboration with Dr F Javid from University of Huddersfield, School of Pharmacy. This partnership involves our partners at Huddersfield running biological tests on our novel compounds. The results of this collaboration are currently being written up and prepared for publication.
Start Year 2017
 
Description Synthesis and characterisation of N-doped carbon nanomaterials 
Organisation Imperial College London
Department Faculty of Engineering
Country United Kingdom 
Sector Academic/University 
PI Contribution Co-supervise two PhD students on related projects. I supervise the synthetic chemistry (preparation of reactive intermediates and subsequent functionalisation of carbon nanomaterials).
Collaborator Contribution Partner (Prof M. Titirici) contributes intellectual input into characterisation and application of synthesised materials, as well as in-kind support with access to and training on requisite apparatus within their labs and/or department
Impact No so far, one paper recently submitted and two further research papers in preparation
Start Year 2018
 
Description Research video for A-Level & prospective undergraduate students 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Recorded a 10-15 minute video that was sent to local schools to help with engagement and prospective undergraduate recruitment. The video is also housed on the QMUL university webpages, so the potential audience is much higher and further-reaching. The video gave a brief overview of the logistics & key info on conducting research in general, then provided an overview of the research across the whole Chemistry Department at QMUL, then the majority of time focussed on my research to provide examples of what we study, why we do it and what we discover.
Year(s) Of Engagement Activity 2020
URL https://www.qmul.ac.uk/sbcs/about-us/our-departments/chemistry/lay-summaries/
 
Description University Open Day 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Undergraduate students
Results and Impact During a university-wide Open Day, I gave a chemistry talk (PowerPoint) and led a tour of the department, both of which involved discussing my research to prospective undergraduates as well as their accompanying guests (i.e. general public).
Year(s) Of Engagement Activity 2020