Computational X-ray Spectroscopy
Lead Research Organisation:
University of Nottingham
Department Name: Sch of Chemistry
Abstract
In recent years, advances in X-ray light sources have led to resurgence in interest in spectroscopy in the X-ray region, and the development of X-ray free-electron lasers that can deliver short femtosecond pulses of hard X-rays has opened up a new vista in time-resolved X-ray absorption measurements that hold the promise of resolving ultrafast chemical processes at an atomic level. The chemical selectivity of these techniques make it ideal as a local probe, providing both the local geometric structure and the electronic environment around a given atom. A common aspect of many studies exploiting these techniques is the use of computational simulations to interpret and analyse the experimental data. This has led to a pressing need for quantitatively accurate calculations of X-ray spectroscopy that can be applied to a wide spectrum of problems. However, the development of methods to simulate spectroscopy in the X-ray region has lagged behind comparable methods able to treat spectroscopy in the UV region, and currently there is no software available that is able to provide quantitatively accurate X-ray absorption and emission spectra for a wide range of systems.
This proposal aims to re-address this balance through the development of specifically designed functionality for the computation of X-ray absorption and emission spectroscopies within the framework of time-dependent density functional theory. This will result in software capable of providing accurate simulations of X-ray absorption and emission spectra that can be applied to a diverse range of systems that can be used by a non-expert user and is capable of treating very large molecules and excitations from transition metal elements. A complementary strand of the work will be to exploit the techniques developed to address systems of key interest, including the interpretation of the X-ray spectroscopic measurements of liquid water, ionic liquids and picosecond X-ray absorption spectroscopy of photo-excited transition metal complexes. This aspect of the project will be enabled through the award of a PhD studentship funded by the School of Chemistry at Nottingham.
This proposal aims to re-address this balance through the development of specifically designed functionality for the computation of X-ray absorption and emission spectroscopies within the framework of time-dependent density functional theory. This will result in software capable of providing accurate simulations of X-ray absorption and emission spectra that can be applied to a diverse range of systems that can be used by a non-expert user and is capable of treating very large molecules and excitations from transition metal elements. A complementary strand of the work will be to exploit the techniques developed to address systems of key interest, including the interpretation of the X-ray spectroscopic measurements of liquid water, ionic liquids and picosecond X-ray absorption spectroscopy of photo-excited transition metal complexes. This aspect of the project will be enabled through the award of a PhD studentship funded by the School of Chemistry at Nottingham.
Planned Impact
The 2012 report 'UK e-Infrastructure Strategy for Science and Business' commissioned by The Department for Business, Innovation & Skills (BIS) highlighted the importance of computation and simulation in scientific process and innovation and led the EPSRC to recognise that the large suite of codes used in research therefore needs to be regarded as a research infrastructure in its own right, requiring support and maintenance along the innovation chain, and throughout its lifecycle. The proposal fits into this framework and outlines a detailed programme for the development and implementation of computational methodologies for the simulation of X-ray absorption and X-ray emission spectroscopies. The primary impact of the work will be amongst the academic and industrial research communities exploiting X-ray spectroscopies in their work. These researchers will benefit from the greater accuracy and much wider range of systems that will be opened up for study by the new software. The software will be readily available through the Q-Chem and Spartan software packages and will be designed to be used by a non-expert user.
Furthermore, the project will address specific scientific problems including interpreting the X-ray spectroscopy of liquid water and understanding the implications for its structure, the study of ionic liquids and the X-ray absorption spectroscopy of photo-excited transition metal complexes building on International and National collaborations resulting in impact in these areas of research. The project will provide excellent training in software development and High Performance Computing for the appointed PDRA and graduate student. Computational science has a proven track record in developing both the technical and soft skills of its practitioners, so giving access to numerous high-level career pathways either within or outside of academia. There will be considerable secondary impact that will stem from the scientific projects that exploit the new software which can be from across the spectrum of work in the remit of EPSRC encompassing many of the Grand Challenges.
Furthermore, the project will address specific scientific problems including interpreting the X-ray spectroscopy of liquid water and understanding the implications for its structure, the study of ionic liquids and the X-ray absorption spectroscopy of photo-excited transition metal complexes building on International and National collaborations resulting in impact in these areas of research. The project will provide excellent training in software development and High Performance Computing for the appointed PDRA and graduate student. Computational science has a proven track record in developing both the technical and soft skills of its practitioners, so giving access to numerous high-level career pathways either within or outside of academia. There will be considerable secondary impact that will stem from the scientific projects that exploit the new software which can be from across the spectrum of work in the remit of EPSRC encompassing many of the Grand Challenges.
Publications
Besley NA
(2016)
Fast Time-Dependent Density Functional Theory Calculations of the X-ray Absorption Spectroscopy of Large Systems.
in Journal of chemical theory and computation
Besley NA
(2020)
Density Functional Theory Based Methods for the Calculation of X-ray Spectroscopy.
in Accounts of chemical research
Clarke CJ
(2019)
Zinc 1s Valence-to-Core X-ray Emission Spectroscopy of Halozincate Complexes.
in The journal of physical chemistry. A
Fogarty R
(2017)
NEXAFS spectroscopy of ionic liquids: experiments versus calculations
in Physical Chemistry Chemical Physics
Forbes R
(2020)
Photoabsorption, photoionization, and Auger processes at the carbon K edge in C H 3 I
in Physical Review A
Forbes R
(2018)
Photoionization of the iodine 3d, 4s, and 4p orbitals in methyl iodide.
in The Journal of chemical physics
Forbes R
(2020)
Photoionization of the I 4d and valence orbitals of methyl iodide
in Journal of Physics B: Atomic, Molecular and Optical Physics
Fransson T
(2016)
X-ray and Electron Spectroscopy of Water.
in Chemical reviews
Hanson-Heine M
(2019)
Electronically excited state geometries and vibrational frequencies calculated using the algebraic diagrammatic construction scheme for the polarization propagator
in Chemical Physics Letters
Hanson-Heine M
(2018)
Assessment of time-dependent density functional theory with the restricted excitation space approximation for excited state calculations of large systems
in Molecular Physics
Description | In the grant to date we have formulated and implemented a method that greatly speeds up the calculation of x-ray absorption spectra within the Q-Chem software package. It is now possible to study much larger systems than could be achieved previously. We have also improved the accuracy of calculations of X-ray emission spectra and this has been made available in the Q-Chem software package. We have used this approach to investigate the X-ray emission spectroscopy of fullerenes and carbon nanotubes. |
Exploitation Route | The code we have developed will become available to other researchers through the Q-Chem software package. |
Sectors | Energy,Other |
Description | The impact of the work is likely be amongst the academic and industrial research communities exploiting X-ray spectroscopies in their work. The computational developments will benefit researchers in terms of the greater accuracy and much wider range of systems that will be opened-up aiding the use of the facility and such software will be readily available through the Q-Chem and Spartan software packages and will be designed to be used by a non-expert user. |
First Year Of Impact | 2023 |
Sector | Chemicals |
Impact Types | Economic |
Description | Probing Femtosecond Dynamics with Core Hole Spectroscopy: A Theoretical Approach |
Amount | £146,559 (GBP) |
Funding ID | RPG-2016-103 |
Organisation | The Leverhulme Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2016 |
End | 06/2020 |
Title | Fast Calculations of X-ray Absorption Spectroscopy |
Description | Based upon the developments in "Fast time-dependent density functional theory calculations of the X-ray absorption spectroscopy of large systems" J. Chem. Theory and Comput., 12, 5018-5025 (2016) the capability to perform calculations of X-ray absorption fine structure based upon time-dependent density functional theory has been extended to much larger systems. This has been implemented within the Q-Chem software program. |
Type Of Material | Improvements to research infrastructure |
Year Produced | 2016 |
Provided To Others? | Yes |
Impact | N/A - too early |
URL | http://www.q-chem.com |
Title | New basis sets for core-electron spectroscopy calculations |
Description | A new set of basis sets for use in quantum chemical calculations of X-ray spectroscopy were introduced. These basis sets provide a more balanced treatment of the neutral and core-ionised states and can reproduce values of much larger basis sets with only the addition of a small number of basis functions. This allows accurate calculations to be performed more efficiently. |
Type Of Material | Improvements to research infrastructure |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | Too early |
URL | http://www.sciencedirect.com/science/article/pii/S0009261418302616 |
Title | X-ray Emission Spectroscopy Calculations |
Description | Based upon the developments reported in "Kohn-Sham density functional theory calculations of non-resonant and resonant X-ray emission spectroscopy" J. Chem. Phys., 146, 094106 (2017) the capability to compute accurate X-ray emission spectra using a computationally efficient approach has been implemented and made available in the Q-Chem software package. |
Type Of Material | Improvements to research infrastructure |
Year Produced | 2017 |
Provided To Others? | Yes |
Impact | N/A - too early. |
URL | http://www.q-chem.com |
Description | Q-Chem Inc. |
Organisation | Q-Chem Inc |
Country | United States |
Sector | Private |
PI Contribution | Q-Chem is a commercial software package of which I am a contributing author. Over the last 10 years this software has grown and now involves a large team involving researchers from many different countries. I have implemented a number of new methods/functionality in the code. |
Collaborator Contribution | The software is maintained and distributed by Q-Chem. This allows my work to be available to the many (10's of thousands) of Q-Chem users in both academia and industry. |
Impact | Q-Chem 2.0: A high performance ab initio electronic structure program package. J. Kong et al. J. Comput. Chem.,21, 1532-1548 (2000) Advances in quantum chemical methods in the Q-Chem 3.0 program package. Y. Shao et al. Phys. Chem. Chem. Phys.,8, 3172-3191 (2006) |