Content Based Image Retrieval For Real-Time Registration In Image-Guided Interventions

Lead Research Organisation: University College London
Department Name: Medical Physics and Biomedical Eng

Abstract

Ultrasound imaging provides important real-time information to guide surgical interventions. Intra-operative Laparoscopic UltraSound (LUS) has been widely used in hepatic surgery, and may improve the detection, characterisation and localisation of hepatic tumours. However, it can be difficult to use LUS as the surgeon is normally required to look at both the laparoscopic video on one monitor and then the UltraSound (US) images on a different monitor, while performing their duties. Furthermore it is difficult to relate live LUS images to pre-operative images such as Magnetic Resonance (MR) or Computed Tomography (CT) scans, as the ultrasound is 2 dimensional, and the MR/CT scans are mostly 3 dimensional, and both look very different to the patients anatomy.

So, various authors including ourselves have developed image-guided laparoscopic surgery systems to provide an integrated computer system to guide the surgeon, where the aim is to provide an intuitive display of all the available imaging data, in a convenient and easy to use fashion. However, while many advancements in guidance technology have been developed by the academic community over the last 20 years, only a very small proportion has transitioned to clinical use. Challenges include the lack of space, the need for sterility, the requirement for as little user-interaction as possible and the time constraints imposed by the cost of theatre time. Many research prototypes simply do not meet these criteria and fail to translate to a clinically useful product.

Typically, current methods of registering (aligning) data are often too slow or too awkward to be used in real-time. I propose a feasibility study to build a new framework for real-time registration that can be applied to applications as diverse as laparoscopic surgery, endoscopic fetal surgery, robot-assisted surgery and image-guided ablation of tumours.

The proposed method will make use of image simulation prior to surgery. The computer will simulate and store a large quantity of ultrasound images, from a variety of different positions and orientations. Then during surgery, the live ultrasound feed will be matched to the images pre-operative, simulated, database. This will enable real-time alignment of the pre-operative data, thereby providing a much easier to use system.

Planned Impact

My role as principal investigator is to maximise the likelihood of the techniques developed through this research being exploited for positive benefits.

A particular benefit of the proposed project is that there are potentially two different routes to a product. If the technology can be made to work without electro-magnetic (EM) tracking, then it will be immediately attractive to a wide variety of ultrasound manufacturers, and will be easy to translate to the clinic, as it will not require significant hardware changes, or changes to clinical workflow. If however, the EM tracking is a necessity, then we will be well placed to translate the technology as we will be communicating with BK Medical and using their new probes.

Impact On Clinical Practice: Minimally invasive procedures offer significant patient, clinical and cost benefits over conventional open surgical procedures. The adoption of such techniques is accelerating in areas such as urology and hepatobiliary surgery. However the more complex procedures place increasing demands on the surgeon and drive the use of more advanced technology such as image guidance to reduce cognitive load. But these technologies will only have real clinical impact if they can work seamlessly in the operating room, do not hinder the normal workflow and hence can be easily adopted as a standard of care. In this project, we will first target laparoscopic ultrasound devices, for the liver and kidney, but in principal, the technology could be applicable to a wide range of imaging devices and interventional procedures.

Commercialisation: In order to have real impact, the technology must be commercialised. I have already started conversations with BK Medical who would be well placed to take advantage of the output. This could take the form of a licensing deal. An alternative is to develop the technology into a product ourselves. Recently CMIC span-out Smart Target (Dr. Dean Barratt), which involved implementing the necessary ISO-13485 quality management system and developing the software to IEC-62304. I was closely involved with setting up and establishing this framework, and my previous commercial experience means I am well placed for such an endeavour.

Intellectual Property: The UCL Business (UCLB) team will be involved throughout the project duration to ensure the timely generation of IP when techniques with commercial exploitation potential arise. UCLB have already been involved in setting up non-disclosure agreements with BK Medical.

Steps To Impact: Starting with the ideas proposed here, I will take the following steps to maximise the impact of the new techniques developed, translate them to the clinic and facilitate industrial exploitation.
1. Development of real-time simulation software and submit a paper to IPCAI 2018 (deadline Nov 2017), a prestigious conference in our field.
2. Establish a research software framework with Dr. Philip Pratt, Imperial College London.
3. Prepare a test data set from our previous porcine experiments and publish online.
4. Develop the main CBIR approach, and submit a paper to MICCAI 2018 (deadline Feb 2018), the premier conference in our field.
5. Collect human data from the RFH cases, and discuss results with BK Medical.
6. Develop a high quality software library with the key algorithms to be either licensed or open-sourced as appropriate, and as advised by UCLB at the time in question.
7. Investigate the interest of BK Medical, and pursue a combined project with BK Medical.
8. If successful, investigate start-up funding for a potential spin-out.

An ESPRC first grant is critical for steps 1 to 6 and to provide the results to support further grant funding and collaborative clinical, academic and industrial partnerships for steps 5-8. Funding for further clinical studies will be sought from the MRC and Wellcome Trust in joint proposals with RFH clinicians.

Publications

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Ramalhinho J (2023) Fan-Slicer: A Pycuda Package for Fast Reslicing of Ultrasound Shaped Planes in Journal of Open Research Software

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Ramalhinho J (2018) A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images. in International journal of computer assisted radiology and surgery

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Ramalhinho J (2022) Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT. in International journal of computer assisted radiology and surgery

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Robu MR (2018) Global rigid registration of CT to video in laparoscopic liver surgery. in International journal of computer assisted radiology and surgery

 
Description The work funded during this award led to the development of a new method for matching ultrasound images to CT images. Our particular application was in liver surgery, where the ultrasound probe is placed inside the patient. This makes it difficult for a surgeon to relate the ultrasound image to the pre-operative CT image. By automatically aligning them, the surgeon can use both images simultaneously, which makes then easier to interpret.
Exploitation Route Our new algorithm could be widely used in a range of ultrasound based applications, but each requires further research.
Sectors Digital/Communication/Information Technologies (including Software)

URL https://gow.epsrc.ukri.org/NGBOViewGrant.aspx?GrantRef=EP/T029404/1
 
Description A multi-modality, surgical planning and guidance system to improve the up-take of laparoscopic liver resection
Amount £1,444,811 (GBP)
Funding ID II-LA-1116-20005 
Organisation National Institute for Health Research 
Sector Public
Country United Kingdom
Start 01/2018 
End 12/2020
 
Description Real-Time Ultrasound Guided Abdominal Interventions Without a Tracking Device
Amount £1,015,268 (GBP)
Funding ID EP/T029404/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 06/2020 
End 06/2023
 
Title ULTRASOUND REGISTRATION 
Description The invention relates to registration of ultrasound scan data with volumetric scan data. More specifically, the invention relates to registration of laparoscopic ultrasound scan data with CT or MRI scan data. 
IP Reference 1910756.4 
Protection Patent application published
Year Protection Granted 2020
Licensed No
Impact Further funding.
 
Title Fan-Slicer: A Pycuda Package for Fast Reslicing of Ultrasound Shaped Planes 
Description Fan-Slicer (https://github.com/UCL/fan-slicer) is a Python package that enables the fast sampling (slicing) of 2D ultrasound-shaped images from a 3D volume. To increase sampling speed, CUDA kernel functions are used in conjunction with the Pycuda package. The main features include functions to generate images from both 3D surface models and 3D volumes. Additionally, the package also allows for the sampling of images from curvilinear (fan shaped planes) and linear (rectangle shaped planes) ultrasound transducers. Potential uses of Fan-slicer include the generation of large datasets of 2D images from 3D volumes and the simulation of intra-operative data among others. 
Type Of Technology Software 
Year Produced 2023 
Open Source License? Yes  
Impact Just released 
URL https://doi.org/10.5334/jors.422
 
Description Science of Surgery Open Day 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Team member Dr Joao Ramalhinho participated in several public engagement activities organised by the Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS). These include the WEISS Science of Surgery open day, where Dr Ramalhinho presented the SnappySonic Ultrasound Simulator.
Year(s) Of Engagement Activity 2019
URL https://www.ucl.ac.uk/interventional-surgical-sciences/science-surgery