Origin and Mechanisms of Flexibility in Molecular Framework Materials: A Data-driven, Graph Theoretical Approach

Lead Research Organisation: Nottingham Trent University
Department Name: School of Science & Technology

Abstract

Molecular framework materials (MFMs) are an emerging materials class that combines the immense richness of functionalities of molecules with the advantages of regular solid materials. High surface area, tuneable pore size and functional groups offer applications in fields such as gas adsorption and separation, catalysis and sensing. They are synthesised by joining metal clusters (nodes) with organic linkers. There are several dozen possible nodes of different shapes, and almost any organic molecule can be used as a linker resulting in a huge "Molecular Meccano" set for the creation of a vast variety of porous MFMs.

Several interesting phenomena have been observed in these materials. Flexibility in the linkers themselves and their attachment to each node leads to breathing and gating behaviour in the materials, without destroying their crystallinity. Framework breathing, for example, can admit guest molecules that would not otherwise fit through pore gates. In a similar manner, small rotations of linkers can create / destroy ideal pockets for absorption of gases such as CO2 and H2.

While fundamental to the behaviour of MFMs, this flexibility poses an inherent challenge to the development of these materials and as yet the fundamental atomistic understanding of the breathing phenomena is not at the stage where it can be employed to design these materials. This project will create a database of all known building blocks for MFMs and then use that database to determine degree and type of flexibility inherent in each building block. The flexibility in each building block can then be related back to the overall framework structures and used to design flexible MFM materials tailored for specific applications - e.g. to store energy (hydrogen or methane) or to separate and purify gas mixtures (such as helium in natural gas).

Planned Impact

The research described in this proposal will be of great importance to both computational and experimental researchers in the Molecular Framework Materials community. Achievement of this project's aims by the data-driven development of a flexible, universal force field, and the subsequent rapid prediction of new, flexible MFMs will have a broad impact amongst researchers developing these MFMs for a wide range of applications, most notably energy storage and catalysis. Relating the dynamic behaviour of the framework to the mechanical properties of the individual building blocks will allow synthetic MFM researchers to design MFMs with specific dynamic behaviour. Development of a general-purpose force-field that accounts for flexibility will similarly have a broad impact in that it will permit both prediction of framework structures exhibiting flexible behaviour and large-scale computational screening of MFMs where even moderate amounts of flexibility in the framework structure can strongly affect the observed properties.

This two-year project signifies a unique contribution to fundamental computational materials chemistry. The results will be disseminated via two world-leading software packages, ToposPro and ADF-AuToGraFS and published in widely read journals such as Crystal Growth & Design and CrystEngComm. In the intermediate term (1-3 years) collaboration with leading synthetic groups will result in predicted MFMs published in major high impact journals such as Angew. Chem. Int. Ed., J. Am. Chem. Soc and Chem. Sci.. The data-mining methodology and database developed with the subsequent material design insights obtained will be presented at the major conferences for the European and worldwide MFM communities (EuroMOF2019 and MOF2020) by the PI and postdoc, enabling researchers in all corners of the MFM community to benefit from this research and hopefully initiate new collaborations, directly benefitting the future research of both the PI and postdoc.

While the proposed research is fundamental, and the economic impact will not be immediate, the design of Molecular Framework Materials, as efficient storage for energy (particularly methane and hydrogen), as catalysts for industrially and environmentally important reactions, such as CO2 reduction, oxidation of hydrocarbons and water splitting, and as filters - e.g. to separate helium from methane, will have a very significant long-term economic and environmental impact.

Publications

10 25 50
 
Description The two key discoveries of this work are that modelling the flexibility of Molecular Framework Materials depends very sensitively on two factors: a) Through-space (non-bonded) interactions with guest molecules and b) In the case that MFMs have multiple isomers - especially due to non-symmetric molecules used as MFM components - the isomer chosen as a computational model.
We developed approaches to address both of these problems. Firstly we developed a stochastic (Monte Carlo) approach to determine the location of large molecules (e.g. styrene) within the pore region of MFMs. Secondly, we have begun work on creating a simple description of MFM isomers - which may number into the thousands.
Exploitation Route From this research we have generated a refined database of MOFs based on the CoRE database and excluding structures that have multiple occupancy sites, or missing structural components. This refined database is available open-source and may be employed by other researchers using big-data methods to optimise MFMs for energy, storage and sensing applications.
It is too early to tell if our statistical description of MFM pores is sufficiently general to be wdely employed, however this work is ongoing.
Sectors Chemicals,Energy,Healthcare

 
Description HORIZON-MSCA-2022-PF-01: A Design Principle for Predicting Flexible Metal-Organic Frameworks: FlexiMOFs-2
Amount € 150,000 (EUR)
Funding ID 101107360 
Organisation Marie Sklodowska-Curie Actions 
Sector Charity/Non Profit
Country Global
Start 09/2023 
End 09/2025
 
Description HPC-Europa3 Transnational Access programme
Amount € 10,000 (EUR)
Funding ID HPC170B2TI 
Organisation European Commission 
Sector Public
Country European Union (EU)
Start 12/2020 
End 09/2021
 
Title Performance of GFN1-xTB for periodic optimization of Metal-Organic Frameworks 
Description GFN-xTB optimised structures of CoRE 2014 and CoRE 2019 structures, with and without lattice optimisation. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact Our reoptimised CoRE structures represent a filtered-CoRE, where a majority of errors in the original database have been removed. This refined database can now be employed by other researchers. We are also negotiating for it to be incorporated in a commercial software package. 
URL https://zenodo.org/record/5840861
 
Title Photoelectrochemical water splitting by triazine based covalent organic framework 
Description DFTB-optimised geometries of TFBB-TAB and TFBB-TAT as cif files. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
URL https://zenodo.org/record/4081292
 
Title Photoelectrochemical water splitting by triazine based covalent organic framework 
Description DFTB-optimised geometries of TFBB-TAB and TFBB-TAT as cif files. 
Type Of Material Database/Collection of data 
Year Produced 2020 
Provided To Others? Yes  
URL https://zenodo.org/record/4081291
 
Description SCM 
Organisation Software for Chemistry & Materials BV
Country Netherlands 
Sector Private 
PI Contribution We continue to develop the AuToGraFS software and fragment database
Collaborator Contribution SCM undertake quality control of our submitted source and market AuToGraFS as part of their AMS software suite.
Impact N/A
Start Year 2018
 
Description SCTMS 
Organisation Samara State University
Country Russian Federation 
Sector Academic/University 
PI Contribution I was responsible for the fundamental idea of building a global database of MFM fragments including intrafragment internal coordinates. The postdoctoral fellow employed by this project brought the expertise to assign energy contributions to coordinates involved in the distortion of molecules.
Collaborator Contribution Our collaboration partners in Samara have been responsible for developing the underlying graph / mathematical description to allow us to match molecular fragments and the internal coordinates corresponding to vibrational distortion of the fragments
Impact N/A
Start Year 2018