Determining cerebrovascular reactivity from the pupil flash response

Lead Research Organisation: University of Oxford
Department Name: Engineering Science

Abstract

For most neurological disorders a diagnosis and intervention is only possible once significant progression has occurred and symptoms are present by which time the prognosis may be poor. It would be preferable to be able to make an early and accurate identification of those people who would be likely to develop such a disease later in life, allowing sufficiently early intervention to prevent it.
The premise is that with the identification of reliable biomarkers of conditions such as Alzheimer's disease, multiple sclerosis, Parkinson's disease and stroke, early identification of individuals predisposed to developing these conditions could be identified from regular screening within routine healthcare activities. The identification of a suitable biomarker has been the focus of much research.

One feature of these diseases which has the indications of being a good biomarker is a measure of how good the blood vessels in the brain are at responding to changes in demand or in response to an external stimulus. This effect is called the cerebrovascular reactivity or CVR. CVR is known to be impaired in the majority of brain diseases, and appears to be one of the earliest detectable symptoms that something is wrong. CVR is however quite complex and difficult to measure, requiring specialist, expensive equipment, and so it has not been widely studied in clinical trials of diseases or treatments. It has also been suggested that there are two different forms of CVR dysfunction, one due to a person's intrinsic biology and another due to their lifestyle, with each requiring different treatments.

The impact of lifestyle on CVR can be estimated from simple questions and physiological measurements but there is currently no simple means of determining the level of intrinsic CVR function. Because of this there is the potential that trials of new treatments could target only one cause but include patients with both types (intrinsic and lifestyle) and therefore be ineffective in a majority of subjects and be incorrectly deemed to be of no use. Being able to readily and cost-effectively determine which of these causes is operative would be highly beneficial to both research and, ultimately, clinical environments.

The hypothesis of this project is that intrinsic CVR dysfunction is caused by a general smooth muscle disorder; as smooth muscle is wrapped around blood vessels to control the flow. One of the few other places that smooth muscle occurs in the body is controlling the iris of the eye. It has been shown that groups known to have impaired CVR also tend to have a higher risk of developing neurological disorders, and the same groups have also been shown to have an impaired response of the pupil to a brief flash of light. As the pupil flash response (PFR) is potentially very cheap, quick and easy to assess it would make an excellent means of testing for intrinsic smooth muscle impairments as an indicator of impaired CVR.

By determining a range of simple physiological measurements for subjects, along with their responses to a lifestyle questionnaire and a measurement of the pupil flash response, the necessary data could be obtained. By then applying analytical machine learning techniques to the results, we propose that this will allow the development of a protocol to enable an accurate assessment of CVR, and its likely type, to be determined. This measurement could then form part of a risk assessment for a host of neurological disorders and enable early interventions to be implemented or discovered.

Planned Impact

The potential impact of this research is wide ranging. In the short term, clinical trials would benefit as they would have the ability to easily and quickly stream participants according to the nature of their CVR impairments in order to investigate the relationship between CVR and cognitive decline and other neurological conditions. As the beta amyloid hypothesis has failed to produce any tangible results for dementia suffers it is time to consider alternative theories of the causes of these diseases, however this will require carefully designed studies to ensure the different forms of CVR are appropriately considered. Existing methods of measuring CVR in a way that can distinguish between the types is not feasible for large-scale trials.

If CVR is shown to be an important biomarker, or even a potential treatment target, then a pupillometry-based measure of CVR would enable the creation of a commercial device for this purpose. There are a small number of clinical pupillometers on the market, but these are designed for measuring changes over the short term to monitor brain injury patients in the emergency room and are not suitable for this purpose. The Department of Engineering Science has a world-class record of creating spin-out companies, particularly in the biomedical sector and thus is ideally placed to be able to facilitate the creation of such a device. Such a device could potentially be used in future clinical trials into a range of neurological conditions, as well as being available in clinical settings such as a GP surgery. Testing a patient's PFR could become as commonplace as measuring their blood pressure.

As it is not yet known which if any aspect of the PFR correlates sufficiently well with CVR for diagnostic purposes it is not possible to predict what the outcomes will be, however a best-case scenario would be that some useful data can be obtained from very simplistic measures of PFR in combination with some basic physiological and lifestyle data (age, height, weight, gender, etc). If a smartphone app can be created to collect this data then it creates the possibility for a huge dataset to be collected through people downloading the free app. This data could then be made freely available researchers around the world.

The evidence to support the hypothesis is mainly through anecdotal correlation, however the only way to test it is with a study of this scale. Without sufficient variation in CVR and PFR it is impossible to test for a genuine relationship between the two. However, if there is one, and it can be used to diagnose a smooth muscle disorder that would impair CVR then it would be a revolution in the field.

Publications

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Title PySilsub-a toolbox for silent substitution 
Description A normal human retina contains several classes of photosensitive cell-rods for low-light vision, three types of cones for daylight vision, and the intrinsically photosensitive retinal ganglion cells (ipRGCs) expressing melanopsin for controlling non-image-forming functions (e.g., pupil size, circadian rhythms). The spectral sensitivities of the photoreceptors overlap significantly, meaning most lights will stimulate all photoreceptors, but to varying degrees. The method of silent substitution (Estévez & Spekreijse, 1982, Vision Research, 22[6], 681-691) provides a principled basis for stimulating individual photoreceptor classes selectively, which is useful in research and clinical settings. The main hardware requirement for silent substitution is a spectrally calibrated light stimulation system with at least as many primaries as there are photoreceptors under consideration. Device settings that will produce lights to selectively stimulate the photoreceptor(s) of interest can be found using a variety of analytic and algorithmic approaches. Here we present PySilSub, a novel Python package for silent substitution featuring object-oriented support for individual colorimetric observer models, multi-primary stimulation devices, and solving silent substitution problems with linear algebra and constrained numerical optimisation. The software is registered with the Python Package Index (pip install pysilsub) and includes example data sets from various multi-primary systems. We hope that PySilSub will further encourage the application of silent substitution in research and clinical settings. 
Type Of Art Film/Video/Animation 
Year Produced 2022 
URL https://figshare.com/articles/poster/PySilsub_a_toolbox_for_silent_substitution/21711830/1
 
Title PySilsub-a toolbox for silent substitution 
Description A normal human retina contains several classes of photosensitive cell-rods for low-light vision, three types of cones for daylight vision, and the intrinsically photosensitive retinal ganglion cells (ipRGCs) expressing melanopsin for controlling non-image-forming functions (e.g., pupil size, circadian rhythms). The spectral sensitivities of the photoreceptors overlap significantly, meaning most lights will stimulate all photoreceptors, but to varying degrees. The method of silent substitution (Estévez & Spekreijse, 1982, Vision Research, 22[6], 681-691) provides a principled basis for stimulating individual photoreceptor classes selectively, which is useful in research and clinical settings. The main hardware requirement for silent substitution is a spectrally calibrated light stimulation system with at least as many primaries as there are photoreceptors under consideration. Device settings that will produce lights to selectively stimulate the photoreceptor(s) of interest can be found using a variety of analytic and algorithmic approaches. Here we present PySilSub, a novel Python package for silent substitution featuring object-oriented support for individual colorimetric observer models, multi-primary stimulation devices, and solving silent substitution problems with linear algebra and constrained numerical optimisation. The software is registered with the Python Package Index (pip install pysilsub) and includes example data sets from various multi-primary systems. We hope that PySilSub will further encourage the application of silent substitution in research and clinical settings. 
Type Of Art Film/Video/Animation 
Year Produced 2022 
URL https://figshare.com/articles/poster/PySilsub_a_toolbox_for_silent_substitution/21711830/6
 
Title PySilsub-a toolbox for silent substitution 
Description A normal human retina contains several classes of photosensitive cell-rods for low-light vision, three types of cones for daylight vision, and the intrinsically photosensitive retinal ganglion cells (ipRGCs) expressing melanopsin for controlling non-image-forming functions (e.g., pupil size, circadian rhythms). The spectral sensitivities of the photoreceptors overlap significantly, meaning most lights will stimulate all photoreceptors, but to varying degrees. The method of silent substitution (Estévez & Spekreijse, 1982, Vision Research, 22[6], 681-691) provides a principled basis for stimulating individual photoreceptor classes selectively, which is useful in research and clinical settings. The main hardware requirement for silent substitution is a spectrally calibrated light stimulation system with at least as many primaries as there are photoreceptors under consideration. Device settings that will produce lights to selectively stimulate the photoreceptor(s) of interest can be found using a variety of analytic and algorithmic approaches. Here we present PySilSub, a novel Python package for silent substitution featuring object-oriented support for individual colorimetric observer models, multi-primary stimulation devices, and solving silent substitution problems with linear algebra and constrained numerical optimisation. The software is registered with the Python Package Index (pip install pysilsub) and includes example data sets from various multi-primary systems. We hope that PySilSub will further encourage the application of silent substitution in research and clinical settings. 
Type Of Art Film/Video/Animation 
Year Produced 2022 
URL https://figshare.com/articles/poster/PySilsub_a_toolbox_for_silent_substitution/21711830/2
 
Title PySilsub-a toolbox for silent substitution 
Description A normal human retina contains several classes of photosensitive cell-rods for low-light vision, three types of cones for daylight vision, and the intrinsically photosensitive retinal ganglion cells (ipRGCs) expressing melanopsin for controlling non-image-forming functions (e.g., pupil size, circadian rhythms). The spectral sensitivities of the photoreceptors overlap significantly, meaning most lights will stimulate all photoreceptors, but to varying degrees. The method of silent substitution (Estévez & Spekreijse, 1982, Vision Research, 22[6], 681-691) provides a principled basis for stimulating individual photoreceptor classes selectively, which is useful in research and clinical settings. The main hardware requirement for silent substitution is a spectrally calibrated light stimulation system with at least as many primaries as there are photoreceptors under consideration. Device settings that will produce lights to selectively stimulate the photoreceptor(s) of interest can be found using a variety of analytic and algorithmic approaches. Here we present PySilSub, a novel Python package for silent substitution featuring object-oriented support for individual colorimetric observer models, multi-primary stimulation devices, and solving silent substitution problems with linear algebra and constrained numerical optimisation. The software is registered with the Python Package Index (pip install pysilsub) and includes example data sets from various multi-primary systems. We hope that PySilSub will further encourage the application of silent substitution in research and clinical settings. 
Type Of Art Film/Video/Animation 
Year Produced 2022 
URL https://figshare.com/articles/poster/PySilsub_a_toolbox_for_silent_substitution/21711830/3
 
Title PySilsub-a toolbox for silent substitution 
Description A normal human retina contains several classes of photosensitive cell-rods for low-light vision, three types of cones for daylight vision, and the intrinsically photosensitive retinal ganglion cells (ipRGCs) expressing melanopsin for controlling non-image-forming functions (e.g., pupil size, circadian rhythms). The spectral sensitivities of the photoreceptors overlap significantly, meaning most lights will stimulate all photoreceptors, but to varying degrees. The method of silent substitution (Estévez & Spekreijse, 1982, Vision Research, 22[6], 681-691) provides a principled basis for stimulating individual photoreceptor classes selectively, which is useful in research and clinical settings. The main hardware requirement for silent substitution is a spectrally calibrated light stimulation system with at least as many primaries as there are photoreceptors under consideration. Device settings that will produce lights to selectively stimulate the photoreceptor(s) of interest can be found using a variety of analytic and algorithmic approaches. Here we present PySilSub, a novel Python package for silent substitution featuring object-oriented support for individual colorimetric observer models, multi-primary stimulation devices, and solving silent substitution problems with linear algebra and constrained numerical optimisation. The software is registered with the Python Package Index (pip install pysilsub) and includes example data sets from various multi-primary systems. We hope that PySilSub will further encourage the application of silent substitution in research and clinical settings. 
Type Of Art Film/Video/Animation 
Year Produced 2022 
URL https://figshare.com/articles/poster/PySilsub_a_toolbox_for_silent_substitution/21711830/5
 
Title PySilsub-a toolbox for silent substitution 
Description A normal human retina contains several classes of photosensitive cell-rods for low-light vision, three types of cones for daylight vision, and the intrinsically photosensitive retinal ganglion cells (ipRGCs) expressing melanopsin for controlling non-image-forming functions (e.g., pupil size, circadian rhythms). The spectral sensitivities of the photoreceptors overlap significantly, meaning most lights will stimulate all photoreceptors, but to varying degrees. The method of silent substitution (Estévez & Spekreijse, 1982, Vision Research, 22[6], 681-691) provides a principled basis for stimulating individual photoreceptor classes selectively, which is useful in research and clinical settings. The main hardware requirement for silent substitution is a spectrally calibrated light stimulation system with at least as many primaries as there are photoreceptors under consideration. Device settings that will produce lights to selectively stimulate the photoreceptor(s) of interest can be found using a variety of analytic and algorithmic approaches. Here we present PySilSub, a novel Python package for silent substitution featuring object-oriented support for individual colorimetric observer models, multi-primary stimulation devices, and solving silent substitution problems with linear algebra and constrained numerical optimisation. The software is registered with the Python Package Index (pip install pysilsub) and includes example data sets from various multi-primary systems. We hope that PySilSub will further encourage the application of silent substitution in research and clinical settings. 
Type Of Art Film/Video/Animation 
Year Produced 2022 
URL https://figshare.com/articles/poster/PySilsub_a_toolbox_for_silent_substitution/21711830
 
Title PySilsub-a toolbox for silent substitution 
Description A normal human retina contains several classes of photosensitive cell-rods for low-light vision, three types of cones for daylight vision, and the intrinsically photosensitive retinal ganglion cells (ipRGCs) expressing melanopsin for controlling non-image-forming functions (e.g., pupil size, circadian rhythms). The spectral sensitivities of the photoreceptors overlap significantly, meaning most lights will stimulate all photoreceptors, but to varying degrees. The method of silent substitution (Estévez & Spekreijse, 1982, Vision Research, 22[6], 681-691) provides a principled basis for stimulating individual photoreceptor classes selectively, which is useful in research and clinical settings. The main hardware requirement for silent substitution is a spectrally calibrated light stimulation system with at least as many primaries as there are photoreceptors under consideration. Device settings that will produce lights to selectively stimulate the photoreceptor(s) of interest can be found using a variety of analytic and algorithmic approaches. Here we present PySilSub, a novel Python package for silent substitution featuring object-oriented support for individual colorimetric observer models, multi-primary stimulation devices, and solving silent substitution problems with linear algebra and constrained numerical optimisation. The software is registered with the Python Package Index (pip install pysilsub) and includes example data sets from various multi-primary systems. We hope that PySilSub will further encourage the application of silent substitution in research and clinical settings. 
Type Of Art Film/Video/Animation 
Year Produced 2022 
URL https://figshare.com/articles/poster/PySilsub_a_toolbox_for_silent_substitution/21711830/4
 
Title Cerebrovascular Reactivity Mapping Without Gas Challenges 
Description We outline a set of practical guidelines based on generally accepted practices and available data, extending previous reports and encouraging the wider application of CVR mapping methodologies in both clinical and academic MRI settings using strategies based on voluntary breathing fluctuations without the need for external gas challenges. 
Type Of Material Physiological assessment or outcome measure 
Year Produced 2021 
Provided To Others? Yes  
Impact The online article has garnered 4,725 views since publication, ranking it above 64% of all Frontiers articles. It has been downloaded 1,171 times which places it above 74% of all Frontiers articles. It has already been cited 7 times, which is high for this type of article. The publication of this article also resulted in a vigorous debate via Twitter and has resulted in multiple sites around the world adopting the strategies proposed. 
URL https://www.frontiersin.org/articles/10.3389/fphys.2020.608475/full
 
Title PyPlr: A versatile, integrated system of hardware and software for researching the human pupillary light reflex 
Description PyPlr is a custom Python library for integrating a research-grade video-based eye-tracker system with a light source and streamlining such processes as the design, optimisation and delivery of stimuli, synchronisation of devices, and extraction, cleaning, and analysis of pupil data. We additionally describe how full-field, homogenous stimulation of the retina can be realised with a low-cost integrating sphere that serves as an alternative to a Maxwellian setup. Users can integrate their own light source, but we provide full native software support for a high-end, research-grade 10-primary light engine which offers advanced control over the temporal and spectral properties of light stimuli. 
Type Of Material Physiological assessment or outcome measure 
Year Produced 2021 
Provided To Others? Yes  
Impact This hardware will be used in the main CVR project but the design and software will be freely available for other researchers to use. 
URL http://pyplr.github.io
 
Description CVR at BCBL 
Organisation Basque Center on Cognition, Brain and Language
Country Spain 
Sector Academic/University 
PI Contribution We have sent one of our PhD students on exchange to the BCBL in 2022 funded by COST Action CA18206 - Short Term Scientific Mission. We have applied for further funding in order to host a BCBL student at Oxford this year. I am a co-applicant on a BCBL-led grant application to increase our level of interaction to include acquiring more data and sharing expertise through site visits. We have also involved colleagues at the University of Nottingham on the project.
Collaborator Contribution We have gained access to a highly valuable CVR dataset at the BCBL and use of their computing cluster for analysing these data. They are also contributing their expertise to assist with our own projects.
Impact Abstract accepted at ISMRM conference: Bayesian and lagged general linear modelling strategies in breath-hold induced cerebrovascular reactivity mapping with muti-echo BOLD fMRI Genevieve Hayes, Joana Pinto, Stefano Moia, Martin Craig, Michael Chappell, César Caballero-Gaudes and Daniel P. Bulte
Start Year 2022
 
Description Cardiovascular reactivity study 
Organisation University of Oxford
Department Division of Cardiovascular Medicine
Country United Kingdom 
Sector Academic/University 
PI Contribution We have loaned the study respiratory gas analysers (value ~£12,000) to use with cardiac patients during hypercapnic MRI scans. We will also assist in the data analysis, providing both code and staff time.
Collaborator Contribution Funding has been awarded for this pilot study. The link between cerebrovascular and cardiovascular disease is well known, however this study gives us the opportunity to investigate the use of techniques we have developed for measuring cerebrovascular health in the assessment of cardiovascular health. Inspired carbon dioxide will be used in a near identical protocol as we use in neuroimaging but for the first time we will image the heart to determine the reactivity of the vessels there. If the data from this pilot study is promising it will result in a larger joint grant application to measure this effect in both the heart and brain in the same session in patients.
Impact None yet. The start of the study has been delayed due to Covid19.
Start Year 2020
 
Description The heart and brain study 
Organisation University of Oxford
Department Department of Psychiatry
Country United Kingdom 
Sector Academic/University 
PI Contribution We have provided the sequence parameters to measure CVR, and loaned respiratory gas analysers and data acquisition hardware (value ~ £12,000) to the study and will also create analysis scripts and assist with data analysis of the CVR imaging data obtained in this study of Whitehall 2 subjects.
Collaborator Contribution The study will share the CVR MRI data obtained from their subjects with us for use in the project, particularly the machine learning aspects where larger datasets are especially valuable. These scan cost on the order of £500 per subject and we hope to obtain data from at least 100 subjects.
Impact None yet. Data collection is still underway and has been severely delayed by Covid19.
Start Year 2020