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Redox-reversible artificial metalloenzymes

Lead Research Organisation: University of York
Department Name: Chemistry

Abstract

As natural biocatalysts, enzymes have evolved over billions or years to be highly efficient and selective. Their application in both bioconversions and chemical syntheses is attractive because of their sustainability and environmental compatibility. However, for many applications, suitable naturally occurring enzymes are not available. Tailor-made artificial metalloenzymes, on the other hand, can combine the selectivity and biocompatibility of proteins with the reactivity and the reaction scope of synthetic catalysts and thus have the potential to expand the range of applications in which biocatalysts can be used, for example by making new-to-nature transformations accessible. Artificial metalloenzymes have not yet progressed into general use, mainly because the proteins and the catalysts are challenging and expensive to produce and, when the artificial enzyme is no longer required or active, its valuable components cannot easily be recycled.

Inspired by the way bacteria acquire essential iron, we have developed a new iron-based anchor unit that connects synthetic catalysts to proteins, creating artificial enzymes, but on chemical reduction of the iron centre, the anchor unit disconnects and triggers the disassembly of the artificial enzymes. Hence both the protein and the synthetic catalyst can be recovered and recycled.

In this project, we will explore the wider scope of these recyclable artificial enzymes and immobilise the protein scaffolds on solid supports to enable their integration into flow systems. In this way, the removal and replacement of catalysts that have lost activity becomes possible. Subsequent replacements with different catalysts would be of particular interest since this would not only allow the protein to be recycled but also enabling an easy switch from one catalysed reaction to another.

The application of this 'catch-and-release' approach to immobilised artificial metalloenzyme design will provide a flexible toolbox for their preparation that allows catalysts, protein scaffolds and solid supports to be mixed, matched and recycled, for us and others to use, adapt and explore further, both in batch processes and in continuous flow.

Planned Impact

Long-term economic and societal impacts: Recently, the speciality enzyme market was projected to reach just under $950 million globally by 2020. The use of biocatalysts for chemical synthesis is particularly attractive because of their sustainability and environmental compatibility. A possible way of furthering the increase in the share of the UK in biocatalysis is the expansion of the biocatalytic toolbox; this is what this proposal aims to achieve. By integrating synthetic chemocatalysts in protein scaffolds, artificial metalloenzymes combine the beneficial features of both, performing synthetic reactions with new levels of selectivity and, importantly, add new-to-nature transformations to the range of reactions that are accessible to this increasingly transformative technology.

Thus far, however, artificial metalloenzymes have not progressed into mainstream use, mainly because both the protein scaffolds and the organometallic catalysts are challenging and expensive to produce and, when the artificial enzyme is no longer required or active, these valuable components are very difficult to recycle. The new redox-reversible anchoring system that we have developed is now opening up new opportunities for component recycling, since it enables the controlled assembly and disassembly of artificial metalloenzymes and therefore the recovery and reuse of the individual components. This redox-reversible approach will be particularly beneficial for applications that use flow processes, where the protein scaffold is immobilised on a solid support and sequential catalyst 'catch-and-release' steps can easily be implemented. Our long-term goal is to bring artificial metalloenzymes closer to commercial viability by developing a flexible toolbox for their preparation that allows catalysts, protein scaffolds and solid supports to be mixed, matched and recycled, thereby contributing to enhancing the scope and sustainability of biocatalysis.

Since the move towards greener technology is of great current interest and importance, the proposed work provides opportunities to engage with the public to raise awareness of environmental and sustainability issues. In addition, biocatalysis and artificial enzymes will be integrated into our undergraduate and graduate teaching and we are offering several undergraduate research and work experience projects in these areas, which proved to be very successful. We intend to continue and extend these and related activities further. The work will result in the training of highly skilled PDRAs, who will be well prepared for employment in either the academic or the industrial sector. In addition, new graduates and final year undergraduates working on related projects will benefit from the training provided.

Publications

10 25 50

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Black CM (2022) Synthesis and antimicrobial activity of an SO2-releasing siderophore conjugate. in Journal of inorganic biochemistry

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Large B (2021) Artificial metalloenzymes: The powerful alliance between protein scaffolds and organometallic catalysts in Current Opinion in Green and Sustainable Chemistry

 
Description In the first two years of the award, selected catalyst conjugates and protein scaffolds required for the assembly of novel artificial metalloenzymes were synthesised and characterised. In the second year, artificial transfer hydrogenases with two new protein scaffolds from thermophilic bacteria were produced. Catalytic tests revealed significantly faster reaction rates and better enantioselectivity. In addition, the immobilisation of artificial transfer hydrogenases on commercially-available resins has been achieved and the properties of the resulting materials were optimised. In addition, redox-controlled catalyst exchange and subsequent recycling studies were carried out. These results were published in 2024. Subsequently, it was found that protein cross-linking can be used as an alternative immobilisation technique. A communication that reports our results was published.
Exploitation Route The results are being published in scientific journals and presented at networking events and conferences to inform other researchers in the field interested in new artificial metalloenzymes. In addition, a special issue on Artificial Metalloenzymes was co-edited by the PI, is due to be published by the Journal of Inorganic Biochemistry in early 2025, with the aim of highlighting key advancement in the field, including those made as part of this award.
Sectors Chemicals

Education

Manufacturing

including Industrial Biotechology

 
Description Some of the publications associated with this award include graphics, images and cover page designs that have inspired one of the PDRAs employed on the grant to apply Blender, an open-source 3D computer graphics software tool, to the design of scientific illustrations. He has subsequently combined the acquired 3D modelling skills with his talent for graphic design to set up a company called Sc.EYE.nce Illustrations (https://sceyence-illustrations.com/).
First Year Of Impact 2021
Sector Digital/Communication/Information Technologies (including Software),Education
Impact Types Cultural

 
Description EPSRC Programme Grant Interview Panel, 18/07/2024
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
 
Description 21ENGBIO: In Cell Assembly of Artificial Imine Reductases for Whole-Cell Catalysis
Amount £100,515 (GBP)
Funding ID BB/W011131/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 02/2023 
End 02/2024
 
Title Dataset associated with publication ''The effect of ligand substituents on spectroscopic and catalytic properties of water-compatible Cp*Ir-(pyridinylmethyl)sulfonamide-based transfer hydrogenation catalysts' 
Description Dataset associated with doi.org/10.1021/acs.inorgchem.3c04040: catalytic activity data, characterization data and variable temperature NMR data 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
Impact not known at this point 
 
Title Dataset associated with publication 'Catch-and-Release: The Assembly, Immobilisation and Recycling of Redox-reversible Artificial Metalloenzymes' 
Description Raw data and processed data associated with DOI: 10.1021/acscatal.3c05294 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
Impact not known at this point 
 
Description 17th European Biological Inorganic Chemistry Conference (EuroBIC-17) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Approximately 200 postgraduate chemistry students from mainly European Universities and Research Institutions attended the plenary lecture. The event resulted in productive discussions and attracted future fellowship applicants and led to the recruitment of a self-funded PhD student.
Year(s) Of Engagement Activity 2024
URL https://www.uni-muenster.de/Chemie.ac/en/eurobic17/
 
Description 20th International Conference on Biological Inorganic Chemistry 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact About 50 conference delegates, including graduate students, attended the event.
Year(s) Of Engagement Activity 2023
 
Description Asian Biological Inorganic Chemistry Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Keynote lecture, attended by approximately 50 delegates.
Year(s) Of Engagement Activity 2022
 
Description European Symposium on Biological and Organic Chemistry - New Frontiers in Chemistry & Biology 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Plenary lecture.
Year(s) Of Engagement Activity 2020
 
Description Faraday Discussion Meeting Harnessing Non Covalent Interactions 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact The unique format of the Faraday Discussion meeting enabled in-depth discussions and provided opportunities for networking with the aim of establishing new collaborations between researchers from across the physical and life sciences working in the areas of synthesis, materials and catalysis.
Year(s) Of Engagement Activity 2023
URL https://www.rsc.org/events/detail/48165/harnessing-non-covalent-interactions-for-synthesis-and-catal...