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IMMUNOREG: Memory of Self: Maintenance and memory of immunoregulatory responses

Lead Research Organisation: University of Cambridge
Department Name: Pathology

Abstract

Regulatory T (Treg) cells are rare immune cells with powerful immunoregulatory functions. Loss of Treg cells results in lethal inflammation, while defects in their function are associated with autoimmunity and allergy. Treg cells also suppress immune responses in cancer. There is intense medical interest in exploiting the powerful functions of Treg cells but efforts to do so have thus far been disappointing - harnessing Treg cells to treat disease remains a major outstanding challenge for the field.

To work properly, Treg responses need to be long-lived: Treg cells that develop early in life need to function continuously throughout life to prevent lethal inflammation. Treg populations are maintained as we age despite reduced thymic output of new T cells. Maintenance of Treg responses is also critical to immunoregulatory memory, which limits harmful immune reactions upon repeated exposure to allergens and infection, and to Treg cell therapy. We presently lack a framework for understanding how Treg responses are maintained despite a continuous requirement for their immunoregulatory functions.

In many tissues, cell populations are maintained by quiescent stem cells which self-renew while giving rise to shorter-lived progeny. We have recently found that a critical characteristic of stem cells - quiescence - is required for Treg cells to be maintained over long periods of time.

Focussing our analyses on inflammatory responses during autoimmune diabetes and neuroinflammation, this research will test the hypothesis that long-lived Treg responses are hierarchically organised, with quiescent self-renewing progenitor cells giving rise to shorter-lived functionally active progeny (Aim 1). We will define molecular mechanisms by which quiescent cells are maintained and how these can be manipulated to improve therapy (Aim 2). By redefining how we think about Treg responses, we will shift the focus from activated Treg cells to their long-lived progenitors whose therapeutic harnessing will benefit patients with inflammatory diseases, transplantation and cancer.

Publications

10 25 50
 
Description We have started to discover the molecular mechanisms which maintain Treg cells, cells important for preventing inflammatory disease but also for promoting immune suppression in cancer
Exploitation Route Development of Treg cell targeted therapies for autoimmunity allergy and cancer
Sectors Pharmaceuticals and Medical Biotechnology

 
Description We are in the process of spinning out a biotechnology company which aims to enhance the efficacy of T cell therapies based on intellectual property arising from this work
First Year Of Impact 2024
Sector Pharmaceuticals and Medical Biotechnology
Impact Types Societal

Economic

 
Title GS-TCGA: Gene Set-based Analysis of The Cancer Genome Atlas 
Description Most tools for analysing large gene expression datasets, including The Cancer Genome Atlas (TCGA), focus on analysis of expression of individual genes or inference of the abundance of specific cell types from global gene expression data. While these methods provide useful insights, they can overlook crucial process-based information that could enhance our understanding of cancer biology. GS-TCGA is a resource designed to enable novel biological insights through gene set-based analyses of data from The Cancer Genome Atlas, leveraging gene sets from the Molecular Signatures Database (MSigDB). It consists of four tools: Gene Set Survival Analysis: GS-Surv allows the user to investigate how the average expression of genes in a specified gene set relates to overall survival in patient data. Co-Correlative Gene Set Enrichment Analysis: CC-GSEA allows generation of novel hypotheses of gene function through performing GSEA on co-correlated genes. Gene Set Correlative Analysis: GS-Corr calculates the average expression of a gene set and correlates this with individual genes. GS-Surv (Custom): This function allows you to upload your own gene set for GS-Surv survival analysis. GS-TCGA was created by Tarrion Baird in our lab in 2023 and can be accessed at: http://gs-tcga.roychoudhurilab.org/ 
Type Of Material Technology assay or reagent 
Year Produced 2023 
Provided To Others? Yes  
Impact Gene set based analysis of TCGA data 
URL https://roychoudhurilab.org/datasets/
 
Description Collaboration between the University of Cambridge Department of Pathology and CRUK Cambridge Cancer Institute 
Organisation Cancer Research UK Cambridge Institute
Country United Kingdom 
Sector Academic/University 
PI Contribution Describing the transcriptional changes associated with NK cell maturation
Collaborator Contribution The research on NK cell maturation and function has fostered a collaboration between my group at the University of Cambridge and that of Dr Tim Halim at CRUK Cambridge Institute, enabling exchange of ideas and reagents
Impact Scientific results (manuscript presently under review); High-content data
Start Year 2020
 
Description Collaboration between the University of Cambridge and AstraZeneca UK PLC 
Organisation AstraZeneca
Country United Kingdom 
Sector Private 
PI Contribution We will support a BBSRC CASE studentship to examine the mechanisms by which Treg cells undergo self-renewal for long-term maintenance
Collaborator Contribution Contribution towards studentship stipend; 4 month industrial placement at AZ
Impact Not yet published
Start Year 2024
 
Description Collaboration between the University of Cambridge and the Wellcome Sanger Institute 
Organisation Wellcome Genome Campus
Country United Kingdom 
Sector Private 
PI Contribution We have provided insights into the function of arhgef1 in immune regulation of cancer metastasis
Collaborator Contribution Wellcome Sanger Institute provided a mouse strain useful for studying the function of Arhgef1 within T cells
Impact Study findings pend publication - these are currently under review in Nature
Start Year 2022
 
Description Collaboration with Professors Awen Gallimore and Andy Godkin 
Organisation Cardiff University
Country United Kingdom 
Sector Academic/University 
PI Contribution Discussions around understanding Treg stemness and the influence of cyclophosphamide in depletion of activated Treg cells
Collaborator Contribution Sample access from patients
Impact N/A
Start Year 2024
 
Description Funded collaboration with AstraZeneca in T cell therapy 
Organisation AstraZeneca
Country United Kingdom 
Sector Private 
PI Contribution We have received substantial research funding for a collaboration with AstraZeneca to develop new ways of improving the efficacy of T cell therapy in cancer. This was funded as part of the AstraZeneca partners of choice wave4 programme, resulting in approximately $900,000
Collaborator Contribution We are undertaking the work in our laboratory in collaboration with researchers at Oregon health sciences University and the University of Nevarra
Impact Still in progress
Start Year 2024
 
Description Public event on cancer immunology and immunotherapy is part of the Cambridge Festival 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact About 70 members of the public attended a talk held by myself, Prof Klaus Okkenhaug and Dr James Jones about advances in our understanding of cancer immunology and how these have fed into cancer immunotherapies which are making transformative impacts on cancer therapy
Year(s) Of Engagement Activity 2024,2025
URL https://www.festival.cam.ac.uk/events/using-immune-system-fight-cancer