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Development of LRRK2 PROTAC degraders as chemical probes and potential lead compounds for the treatment of Parkinson's disease

Lead Research Organisation: University of Dundee
Department Name: School of Life Sciences

Abstract

Parkinson's Disease (PD) is the second most common neurodegenerative disorder worldwide and no treatment is currently available to halt the onset and/or progression of PD pharmacologically. The kinase-activating G2019S mutations in Leucine-Rich Repeat Kinase 2 (LRRK2) is one of the most common genetic causes of PD and has motivated work to develop LRRK2-targeted therapies, including LRRK2 kinase inhibitors. However, current LRRK2 kinase inhibitors, albeit in clinical trials, promote LRRK2 and microtubule association, underlying potential undesirable side effects. Alternative LRRK2-targeting strategy, known as LRRK2 Proteolysis Targeting Chimera (PROTAC) is therefore proposed. LRRK2 PROTACs are heterobifunctional small molecules that consist of a ligand that binds LRRK2, conjugated to a ligand that binds an E3 ubiquitin ligase via a linker. By recruiting a E3 ubiquitin ligase in close proximity to a LRRK2 protein, LRRK2 PROTACs can induce the ubiquitination and subsequent degradation of LRRK2 through the ubiquitin-proteasome pathway. By designing and synthesizing a few sets of LRRK2 PROTAC compounds and screening them with degradation assays on multiple cell lines, we identified potent LRRK2 PROTACs that degraded LRRK2 at nanomolar range concentrations. The goal of this fellowship is to further improve the potencies of these LRRK2 PROTACs through structural modification and qualify them as chemical probes and potential lead compounds for the treatment of PD by detailed in vitro and in vivo characterization and PD-related biology studies.

Publications

10 25 50
 
Description we have developed a novel chemical tool that degrades an important protein in Parkinsons' disease offering hope to patients for new treatment in PD.
Exploitation Route through use of the compounds in their own research and through collaborative research with industry
Sectors Healthcare

URL https://sites.dundee.ac.uk/alessio-ciulli/publications/
 
Description The LRRK2 PROTAC degrader XL01226 is being used worldwide as a research tool for biomedical research. see more info here: https://www.guidetopharmacology.org/GRAC/LigandDisplayForward?tab=refs&ligandId=12009 On 20th February 2024 the biopharmaceutical company Arvinas Announced First-in-Human Dosing of ARV-102, an Investigational PROTAC® Protein Degrader for Neurodegenerative Disease https://ir.arvinas.com/news-releases/news-release-details/arvinas-announces-first-human-dosing-arv-102-investigational https://www.arvinas.com/wp-content/uploads/2024/10/Cacace_ARVINAS-MJFF-2024_Final.pdf
First Year Of Impact 2024
Sector Pharmaceuticals and Medical Biotechnology
Impact Types Societal

Economic

 
Description LRRK2 Investigative Therapeutics Exchange (LITE)
Amount £29,945,870 (GBP)
Funding ID MJFF-025924 
Organisation Michael J Fox Foundation 
Sector Charity/Non Profit
Country United States
Start 01/2025 
End 12/2026
 
Description Ono Pharma Rising Star collaboration initiative
Amount £75,000 (GBP)
Organisation Ono Pharmaceutical 
Sector Private
Country Japan
Start 01/2021 
End 04/2022
 
Title XL-01126 
Description XL01126 is a potent degrader of LRRK2 with DC50s of 14 nM (G2019S LRRK2) and 32 nM (WT LRRK2), respectively. XL01126 can cross blood-brain barrier and be used as a degrader probe in Parkinson's disease research. XL01126 exerts function of study of non-catalytic and scaffolding functions of LRRK2. 
Type Of Material Technology assay or reagent 
Year Produced 2022 
Provided To Others? Yes  
Impact n/a 
URL https://www.medchemexpress.com/xl01126.html
 
Title AMINOPYRIMIDINYL DERIVATIVES FOR THE TREAMENT OF PARKINSON'S DISEASE 
Description Disclosed are heterobifunctional compounds that can induce the degradation of leucine-rich repeat kinase 2 (LRRK2) and PDE6D. These compounds can engage LRRK2 on one end and bind to an ubiquitin E3 ligase (e.g. cereblon, Von Hippel-Lindau, or Cellular Inhibitor of Apoptosis (clAP)) on the other end and therefore bring LRRK2 in close proximity to the E3 ligase and induce the ubiquitination and degradation of the LRRK2 protein. Also disclosed are pharmaceutical composition comprising the heterobifunctional compounds and methods of using the compounds to treat LRRK2 and PDE6D-related diseases and disorders. 
IP Reference EP4276097 
Protection Patent / Patent application
Year Protection Granted 2023
Licensed Commercial In Confidence
Impact n/a
 
Description Marie Sklodowska-Curie Fellowship Success for Xingui Liu 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact media PR highlighitng the award of Xingui Liu Marie Curie Fellowship
Year(s) Of Engagement Activity 2022
URL https://www.dundee.ac.uk/stories/marie-sklodowska-curie-fellowship-success-xingui-liu
 
Description Research breakthrough will help develop future treatments against Parkinson's disease 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact University of Dundee Stories

Press release

Research breakthrough will help develop future treatments against Parkinson's disease
Published on 31 August 2022

Researchers from the University of Dundee have discovered a small molecule that helps to eliminate a Parkinson's disease-causing protein
Year(s) Of Engagement Activity 2022
URL https://www.dundee.ac.uk/stories/research-breakthrough-parkinsons-disease
 
Description Visit by patients and families of the Parkinson's Dundee Research Interest Group (DRIG): 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Patients, carers and/or patient groups
Results and Impact Connect and collaborate Parkinson's outreach event in the School of Life Sciences

On November 7 of this year, the Parkinson's UK's leadership team including CEO Caroline
Rassell, Deputy director of research Professor David Dexter and the new Scotland director
James Jopling visited the Parkinson's research team at the University of Dundee. In the
morning, researchers from Dundee including Dr. Xingui Liu (the Research Fellow), Dr. William Farnaby, Dr VAlentina Spiteri, Professor Dario Alessi, Dr. Paul Davies, Professor
Miratul Muqit, Dr. Andy Howden, Professor Ian Ganley and Dr. Esther Sammler who gave an overview of their work.

The afternoon was all about public & patient outreach and research engagement. In Scotland
and in particular Dundee, we are fortunate to closely interact with the Parkinson's UK
Research Interest Groups and local communities, but we were nevertheless overwhelmed by
the interest in our event. It started off with tea and coffee before Dr. Sara Gomes, Dr. Andy
Howden and Dr. Will Farnaby took our guests on 3 parallel lab tours through state-of-the-art
mass-spectrometry facilities, the drug discovery unit, tissue culture suites and pit stops for
discussions with scientists in their work environment on the bench. The tours were followed
by talks by Professor Dario Alessi on the long journey from basic science to clinical trials
exemplified by LRRK2. This was then followed by John Michelson with an overview of the
Scottish research interest groups with past and future activities as well as Professor David
Dexter on Parkinson's UK's ambitions, research strategy and funding opportunities. Dr.
Brendan Howden from the Dundee Research Group chaired this session and ensured that
there was enough time for questions and lively discussion. It was a busy but hugely successful
day and the feedback received so far - from undergraduate students to senior scientists as
well as from people affected by Parkinson's from near and afar - has been wonderful! Open
dialogue between scientists, clinicians and the public ensure that our research is relevant,
trusted - also in terms of research and clinical trial participation - and with the added side
effect that it is hugely motivating! We are looking forward to our next events! Special thanks
go to Jo and Brendan Hawdon from DRIG as well as Alison Hart from the MRC PPU and Liz
Nash from Parkinson's UK.
Year(s) Of Engagement Activity 2022
URL https://www.dundee.ac.uk/stories/connect-and-collaborate-parkinsons-outreach-event-school-life-scien...