Development of LRRK2 PROTAC degraders as chemical probes and potential lead compounds for the treatment of Parkinson's disease
Lead Research Organisation:
University of Dundee
Department Name: School of Life Sciences
Abstract
Parkinson's Disease (PD) is the second most common neurodegenerative disorder worldwide and no treatment is currently available to halt the onset and/or progression of PD pharmacologically. The kinase-activating G2019S mutations in Leucine-Rich Repeat Kinase 2 (LRRK2) is one of the most common genetic causes of PD and has motivated work to develop LRRK2-targeted therapies, including LRRK2 kinase inhibitors. However, current LRRK2 kinase inhibitors, albeit in clinical trials, promote LRRK2 and microtubule association, underlying potential undesirable side effects. Alternative LRRK2-targeting strategy, known as LRRK2 Proteolysis Targeting Chimera (PROTAC) is therefore proposed. LRRK2 PROTACs are heterobifunctional small molecules that consist of a ligand that binds LRRK2, conjugated to a ligand that binds an E3 ubiquitin ligase via a linker. By recruiting a E3 ubiquitin ligase in close proximity to a LRRK2 protein, LRRK2 PROTACs can induce the ubiquitination and subsequent degradation of LRRK2 through the ubiquitin-proteasome pathway. By designing and synthesizing a few sets of LRRK2 PROTAC compounds and screening them with degradation assays on multiple cell lines, we identified potent LRRK2 PROTACs that degraded LRRK2 at nanomolar range concentrations. The goal of this fellowship is to further improve the potencies of these LRRK2 PROTACs through structural modification and qualify them as chemical probes and potential lead compounds for the treatment of PD by detailed in vitro and in vivo characterization and PD-related biology studies.
Publications
Liu X
(2022)
Discovery of XL01126: A Potent, Fast, Cooperative, Selective, Orally Bioavailable, and Blood-Brain Barrier Penetrant PROTAC Degrader of Leucine-Rich Repeat Kinase 2.
in Journal of the American Chemical Society
Liu X
(2022)
DUB be good to me.
in Nature chemical biology
Liu X
(2023)
Proximity-Based Modalities for Biology and Medicine.
in ACS central science
Pierri M
(2024)
Stereochemical inversion at a 1,4-cyclohexyl PROTAC linker fine-tunes conformation and binding affinity.
in Bioorganic & medicinal chemistry letters
| Description | we have developed a novel chemical tool that degrades an important protein in Parkinsons' disease offering hope to patients for new treatment in PD. |
| Exploitation Route | through use of the compounds in their own research and through collaborative research with industry |
| Sectors | Healthcare |
| URL | https://sites.dundee.ac.uk/alessio-ciulli/publications/ |
| Description | The LRRK2 PROTAC degrader XL01226 is being used worldwide as a research tool for biomedical research. see more info here: https://www.guidetopharmacology.org/GRAC/LigandDisplayForward?tab=refs&ligandId=12009 On 20th February 2024 the biopharmaceutical company Arvinas Announced First-in-Human Dosing of ARV-102, an Investigational PROTAC® Protein Degrader for Neurodegenerative Disease https://ir.arvinas.com/news-releases/news-release-details/arvinas-announces-first-human-dosing-arv-102-investigational https://www.arvinas.com/wp-content/uploads/2024/10/Cacace_ARVINAS-MJFF-2024_Final.pdf |
| First Year Of Impact | 2024 |
| Sector | Pharmaceuticals and Medical Biotechnology |
| Impact Types | Societal Economic |
| Description | LRRK2 Investigative Therapeutics Exchange (LITE) |
| Amount | £29,945,870 (GBP) |
| Funding ID | MJFF-025924 |
| Organisation | Michael J Fox Foundation |
| Sector | Charity/Non Profit |
| Country | United States |
| Start | 01/2025 |
| End | 12/2026 |
| Description | Ono Pharma Rising Star collaboration initiative |
| Amount | £75,000 (GBP) |
| Organisation | Ono Pharmaceutical |
| Sector | Private |
| Country | Japan |
| Start | 01/2021 |
| End | 04/2022 |
| Title | XL-01126 |
| Description | XL01126 is a potent degrader of LRRK2 with DC50s of 14 nM (G2019S LRRK2) and 32 nM (WT LRRK2), respectively. XL01126 can cross blood-brain barrier and be used as a degrader probe in Parkinson's disease research. XL01126 exerts function of study of non-catalytic and scaffolding functions of LRRK2. |
| Type Of Material | Technology assay or reagent |
| Year Produced | 2022 |
| Provided To Others? | Yes |
| Impact | n/a |
| URL | https://www.medchemexpress.com/xl01126.html |
| Title | AMINOPYRIMIDINYL DERIVATIVES FOR THE TREAMENT OF PARKINSON'S DISEASE |
| Description | Disclosed are heterobifunctional compounds that can induce the degradation of leucine-rich repeat kinase 2 (LRRK2) and PDE6D. These compounds can engage LRRK2 on one end and bind to an ubiquitin E3 ligase (e.g. cereblon, Von Hippel-Lindau, or Cellular Inhibitor of Apoptosis (clAP)) on the other end and therefore bring LRRK2 in close proximity to the E3 ligase and induce the ubiquitination and degradation of the LRRK2 protein. Also disclosed are pharmaceutical composition comprising the heterobifunctional compounds and methods of using the compounds to treat LRRK2 and PDE6D-related diseases and disorders. |
| IP Reference | EP4276097 |
| Protection | Patent / Patent application |
| Year Protection Granted | 2023 |
| Licensed | Commercial In Confidence |
| Impact | n/a |
| Description | Marie Sklodowska-Curie Fellowship Success for Xingui Liu |
| Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Media (as a channel to the public) |
| Results and Impact | media PR highlighitng the award of Xingui Liu Marie Curie Fellowship |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.dundee.ac.uk/stories/marie-sklodowska-curie-fellowship-success-xingui-liu |
| Description | Research breakthrough will help develop future treatments against Parkinson's disease |
| Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Media (as a channel to the public) |
| Results and Impact | University of Dundee Stories Press release Research breakthrough will help develop future treatments against Parkinson's disease Published on 31 August 2022 Researchers from the University of Dundee have discovered a small molecule that helps to eliminate a Parkinson's disease-causing protein |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.dundee.ac.uk/stories/research-breakthrough-parkinsons-disease |
| Description | Visit by patients and families of the Parkinson's Dundee Research Interest Group (DRIG): |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Patients, carers and/or patient groups |
| Results and Impact | Connect and collaborate Parkinson's outreach event in the School of Life Sciences On November 7 of this year, the Parkinson's UK's leadership team including CEO Caroline Rassell, Deputy director of research Professor David Dexter and the new Scotland director James Jopling visited the Parkinson's research team at the University of Dundee. In the morning, researchers from Dundee including Dr. Xingui Liu (the Research Fellow), Dr. William Farnaby, Dr VAlentina Spiteri, Professor Dario Alessi, Dr. Paul Davies, Professor Miratul Muqit, Dr. Andy Howden, Professor Ian Ganley and Dr. Esther Sammler who gave an overview of their work. The afternoon was all about public & patient outreach and research engagement. In Scotland and in particular Dundee, we are fortunate to closely interact with the Parkinson's UK Research Interest Groups and local communities, but we were nevertheless overwhelmed by the interest in our event. It started off with tea and coffee before Dr. Sara Gomes, Dr. Andy Howden and Dr. Will Farnaby took our guests on 3 parallel lab tours through state-of-the-art mass-spectrometry facilities, the drug discovery unit, tissue culture suites and pit stops for discussions with scientists in their work environment on the bench. The tours were followed by talks by Professor Dario Alessi on the long journey from basic science to clinical trials exemplified by LRRK2. This was then followed by John Michelson with an overview of the Scottish research interest groups with past and future activities as well as Professor David Dexter on Parkinson's UK's ambitions, research strategy and funding opportunities. Dr. Brendan Howden from the Dundee Research Group chaired this session and ensured that there was enough time for questions and lively discussion. It was a busy but hugely successful day and the feedback received so far - from undergraduate students to senior scientists as well as from people affected by Parkinson's from near and afar - has been wonderful! Open dialogue between scientists, clinicians and the public ensure that our research is relevant, trusted - also in terms of research and clinical trial participation - and with the added side effect that it is hugely motivating! We are looking forward to our next events! Special thanks go to Jo and Brendan Hawdon from DRIG as well as Alison Hart from the MRC PPU and Liz Nash from Parkinson's UK. |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.dundee.ac.uk/stories/connect-and-collaborate-parkinsons-outreach-event-school-life-scien... |
