Development of an In-Silico Research Framework for Accelerating the Translation of Quantitative Photon-Counting Spectral Imaging to the Clinic
Lead Research Organisation:
Institute of Cancer Research
Department Name: Division of Radiotherapy and Imaging
Abstract
Personalising patient treatments and assessing treatment response are both tasks which could benefit greatly from molecular information. SPECT and PET offer molecular imaging but are expensive, have relatively poor spatial resolution and require specialist radio-pharmaceuticals and facilities. MRI can provide some molecular information, but these scanners are slow and many patients are unable to use MRI machines due to metal implants, pacemakers or claustrophobia. Ideally molecular imaging could be obtained from x-ray images, as these systems are fast, offer excellent spatial resolution and are suitable for almost all patient populations. Unfortunately, conventional x-ray machines are unable to provide molecular information, offer poor soft tissue contrast and deliver significant ionising radiation doses. All three of these problems are addressed in a new x-ray imaging technology, known as x-ray photon counting spectral imaging (x-CSI), which provides MRI comparable soft tissue contrast with CT spatial resolution and only 1 fifth of the radiation dose.
x-CSI technology is just now entering clinical trials, with all major healthcare manufacturers working on developing their own system. Yet many important questions remain regarding how x-CSI can best be exploited for patient benefit. What are the best pixel sizes, sensor materials, signal correction schemes etc.? How should the spectral data be reconstructed? What clinical applications would benefit most from the added information? Computer simulations are normally used to answer these questions, however x-CSI simulations are significantly more complicated than conventional x-ray simulations due to the higher sensitivity to distortions from short range physics processes and consequently the more complicated electronics required. There are thus currently no tools capable of modelling an x-CSI scanner in enough detail to answer these questions fully. This project seeks to redress this by:
1. Extending our existing simulation framework to better model short range physics processes that degrade x-CSI images and the novel electronics proposed to correct for them. We would also add 3D image reconstruction and image analysis tools so that imaging tasks used in treating cancer patients can be simulated
2. Using the completed framework to optimise an x-CSI scanner for each of three different cancer related imaging tasks, considering a range of different cancer types as identified by our oncologist and radiologist collaborators
3. Optimising a single general-purpose x-CSI scanner for performing all three clinical imaging tasks
4. Comparing the general-purpose scanner in each imaging task with the scanner optimised for that task, quantifying any performance differences
This work would provide both immediate and longer-term benefits to a range of stakeholders. By quantifying performance differences between a general-purpose and task optimised scanner for each clinical imaging task, this work will be able to determine whether a general-purpose scanner will be suitable in oncology, or whether task optimised x-CSI scanners are necessary. Combined with the optimised x-CSI scanner designs determined for the various oncology tasks, this information will both inform healthcare manufacturers seeking to adapt their scanners for oncology, and empower doctors with the information needed to argue for specialist scanners where these could affect clinical decisions. Longer term, publishing instructions for the simulation framework will allow more researchers to engage in x-CSI research by providing a low-cost source alternative to having a physical x-CSI scanner, unrestricted access to the data it generates and the ability to know the ground truth precisely at each stage of the imaging chain.
This project would thus accelerate the translation of the x-CSI from the lab to the clinic and ensure that transfer occurs in a way which maximises patient benefit from this cutting-edge technology.
x-CSI technology is just now entering clinical trials, with all major healthcare manufacturers working on developing their own system. Yet many important questions remain regarding how x-CSI can best be exploited for patient benefit. What are the best pixel sizes, sensor materials, signal correction schemes etc.? How should the spectral data be reconstructed? What clinical applications would benefit most from the added information? Computer simulations are normally used to answer these questions, however x-CSI simulations are significantly more complicated than conventional x-ray simulations due to the higher sensitivity to distortions from short range physics processes and consequently the more complicated electronics required. There are thus currently no tools capable of modelling an x-CSI scanner in enough detail to answer these questions fully. This project seeks to redress this by:
1. Extending our existing simulation framework to better model short range physics processes that degrade x-CSI images and the novel electronics proposed to correct for them. We would also add 3D image reconstruction and image analysis tools so that imaging tasks used in treating cancer patients can be simulated
2. Using the completed framework to optimise an x-CSI scanner for each of three different cancer related imaging tasks, considering a range of different cancer types as identified by our oncologist and radiologist collaborators
3. Optimising a single general-purpose x-CSI scanner for performing all three clinical imaging tasks
4. Comparing the general-purpose scanner in each imaging task with the scanner optimised for that task, quantifying any performance differences
This work would provide both immediate and longer-term benefits to a range of stakeholders. By quantifying performance differences between a general-purpose and task optimised scanner for each clinical imaging task, this work will be able to determine whether a general-purpose scanner will be suitable in oncology, or whether task optimised x-CSI scanners are necessary. Combined with the optimised x-CSI scanner designs determined for the various oncology tasks, this information will both inform healthcare manufacturers seeking to adapt their scanners for oncology, and empower doctors with the information needed to argue for specialist scanners where these could affect clinical decisions. Longer term, publishing instructions for the simulation framework will allow more researchers to engage in x-CSI research by providing a low-cost source alternative to having a physical x-CSI scanner, unrestricted access to the data it generates and the ability to know the ground truth precisely at each stage of the imaging chain.
This project would thus accelerate the translation of the x-CSI from the lab to the clinic and ensure that transfer occurs in a way which maximises patient benefit from this cutting-edge technology.
Organisations
- Institute of Cancer Research (Lead Research Organisation)
- Science and Technologies Facilities Council (STFC) (Collaboration)
- Mayo Clinic and Foundation (Rochester) (Project Partner)
- University of Otago (Project Partner)
- Delft University of Technology (Project Partner)
- Varex Imaging (Project Partner)
- MARS Bioimaging Ltd (Project Partner)
People |
ORCID iD |
| Dimitra Darambara (Principal Investigator) |
Publications
Pickford Scienti OLP
(2024)
To Reconstruct or Discard: A Comparison of Additive and Subtractive Charge Sharing Correction Algorithms at High and Low X-ray Fluxes.
in Sensors (Basel, Switzerland)
| Description | Mayneord Phillips Trust Education Programme (MPEP24) |
| Geographic Reach | National |
| Policy Influence Type | Influenced training of practitioners or researchers |
| Impact | AI in healthcare has been receiving attention from researchers, healthcare professionals and NHS. AI could be a transformative force in healthcare, as it has the potential to revolutionise healthcare by enhancing and assisting in disease diagnosis, suggesting treatments and predicting patient outcomes. During this educational activity the following have been thoroughly discussed: potential and limitations of AI in healthcare; technical and regulatory challenges of AI; next steps required for embedding AI implementation effectively into clinical practices and ethical and social aspects of AI in healthcare |
| Title | Charge Sharing Correction Algorithms with exponential pulse decay (within CoGI) |
| Description | CoGI (the team's novel computer framework) now has the ability to model pulse shapes based on rapid climbs and exponential decay, rather than the former impulse or square wave forms. This new pulse shape model is closer to the operation of physical x-CSI systems and so is more useful at higher fluxes, where pileup is more likely and thus the decay shape of the pulse is more relevant. The existing charge sharing correction algorithms (CSCAs) were all designed to function in discrete time intervals, limiting the potential for pileup modelling at very high fluxes and preventing paralysable detector models being produced. New versions of all CSCAs have now been coded which operate in a continuous time mode, allowing the more accurate pulse shapes available in CoGI to be used with the CSCAs and allowing paralysable detectors to be modelled when using the CSCA options. |
| Type Of Material | Computer model/algorithm |
| Year Produced | 2025 |
| Provided To Others? | No |
| Impact | The development of CSCAs which are compatible with continuous time simulations represents an important step towards the goal of this project. This is because determining whether CSCAs or alternative count triggering schemes (ACTS) are better for improving spectral fidelity in oncological imaging applications is an important milestone in this project, however the ACTS operate only in continuous time mode. A comparison of CSCAs and ACTS for medical imaging tasks is now underway thanks to these new modules and the results will form the basis of a publication later this year. |
| Title | Spectral Imaging quality assessment phantoms |
| Description | These are two cylindrical phantoms, one designed for general imaging metrics (CNS, SNR, NPS and MTF calculations) and the other for spectral specific metrics (containing 6 cylindrical inserts each of iodine and calcium separately, as well as 6 inserts containing mixtures of Ca and I. The insert concentrations are designed to generate the same HU values on an energy integrating x-ray, making spectral information the only way to reliable distinguish the I from the Ca). |
| Type Of Material | Computer model/algorithm |
| Year Produced | 2024 |
| Provided To Others? | No |
| Impact | These phantoms are a crucial part of comparing simulated multispectral photon-counting x-ray systems (x-CSI) in terms of more medically relevant imaging metrics than the previously used detector based metrics. They will be used as digital phantoms with a known ground truth to help develop and refinement the x-CSI specific oncology imaging tools needed for later in this project. |
| Title | x-CSI specific electronic noise generator (x-SpENG) |
| Description | This is another module incorporated into CoGI. The software models how electronic noise manifests in an x-CSI system with attention to noise spectrum shape and size, as well as the location within the imaging chain at which it manifests. This form of noise is important for modelling several x-CSI specific spectral distortions, particularly regarding CSCA modelling, and differs significantly from the way electronic noise manifests in traditional energy integrating detectors. |
| Type Of Material | Computer model/algorithm |
| Year Produced | 2024 |
| Provided To Others? | Yes |
| Impact | The first iteration of this approach is included in the CT meeting 2024 proceedings, authors M Kattau, O Pickford Scienti and D Darambara, titled Deep learning-based tumour segmentation on spectral photon-counting CT images and available at https://ct-meeting.org/data/ProceedingsCTMeeting2024.pdf The model is another important component for allowing a robust comparison of CSCAs and ACTS. It was also used to determine whether photon-counting x-CSI or energy integrating detectors are more robust to increasing levels of electronic noise, specifically for the task of AI-based tumour delineation in brain CTs. |
| Description | Characterisation of the HEXITEC_MHZ detector at Diamond beamline and validation of simulated charge induction maps using CoGI |
| Organisation | Science and Technologies Facilities Council (STFC) |
| Country | United Kingdom |
| Sector | Public |
| PI Contribution | So far in this project we have provided a researcher to help with the setup and planning of the beamline experiments proposed with the STFC-Detector Development Group at RAL. This researcher helped debug issues with the data recording and looping which only became evident during long duration acquisitions. The researcher also developed MATLAB scripts for sorting and animating the beam stepping process in the test runs. Initial data analysis revealed deviations in the electric field which made one device unsuitable for further processing, and allowed rapid movement to data analysis from a more suitable device. This researcher is now in the process of analysing the data produced from 3 experimental runs, with an aim of producing charge induction efficiency maps, identifying locations associated with charge sharing and using the ratio of shared charge to identify any electric field non-uniformities. This data can then be used in combination with simulations to refine the signal processing chains and baseline corrections employed in the detector firmware. |
| Collaborator Contribution | So far in this project the collaborators have provided 3 HexitecMHZ detectors and associated 3-stage FPGAs for the beamline experiment, as well as access to the Diamond beamline (working with us to plan experiments which would provide data useful for both teams within their allotted beam time) and all of the staff required to perform the experimental measurements. We estimate the value of the hardware loaned for the experiment to be ~£65,000 and the value of the staff time to be ~£2,000. Additionally, the HEXITEC_MHZ team provided detailed discussions with their software, firmware and circuit designers, which allowed our research team to more accurately reflect the HEXITEC_MHZ signal processing chain in our simulations. Finally, the team has provided experimental data, acquired according to our research group's needs, which will allow us to validate the newer additions to our existing photon counting simulation framework (CoGI). Moving forward, the HEXITEC_MHZ group will organise for a post-experiment catch up and debrief for data sharing (set for April 8th) and will provide support in interpreting the data and preparing a publication on the experimental validation of our simulation work. |
| Impact | The collaboration is still ongoing, so the outputs are still in progress. What has been achieved so far is the recording of experimental data from a national beam line, as well as MATLAB scripts for analysing the data. The analysis of this data will allow for validation of the simulation framework so far, and the digital model of HEXITEC_MHZ and associated validation will form the basis of a publication. The collaboration on this work has been multidisciplinary in nature, combining electronic engineers and circuit designers, firmware and software engineers, and physicists specialising in both x-ray detectors and medical imaging. Both partners in the collaboration are eager to continue working together on projects of shared interest. As a result, we will be applying for more beam time for a joint experiment to compare the performance of a photon counting mode for HEXITEC_MHZ (under development) to a true photon counting detector. Information from these experiments will inform future photon counting designs for the HEXITEC_MHZ team, and will provide valuable data for refining full spectral imaging models within CoGI. |
| Start Year | 2024 |
| Description | European Organisation for Research and Treatment of Cancer |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | European Cancer Radiologists, members of the Imaging Group of the EORTC, attended this high-level seminar on Photon-Counting CT: innovation and implementation, which sparked many interesting questions and discussions afterwards, in particular about the implementation of this novel medical imaging technique in the clinic |
| Year(s) Of Engagement Activity | 2023 |
| Description | International Imaging Congress |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | This is the largest free event for NHS radiology, pathology and oncology professionals, i.e. medical clinicians, technologists, clinical scientists, patients and industrialists, to discover and discuss the latest innovations in medical imaging and how patients can be enhanced by new technologies |
| Year(s) Of Engagement Activity | 2024 |
| Description | Mayneord Phillips Trust Educational Programme (MPEP24) |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Postgraduate students |
| Results and Impact | PhD level students and other early career researchers and trainees/clinical scientists in the field of Medical Physics and Bioengineering attended this inspiring Educational Event of Mayneord-Phillips Trust (governed by IOP, IPEM and BIR), which provided an invaluable opportunity for them to meet with and receive first-hand teaching and feedback from leading experts in the field of AI in Imaging and Treatment. The PI of this award was appointed Head of Faculty by the IOP, IPEM and BIR. |
| Year(s) Of Engagement Activity | 2024 |
| Description | RMH Radiology Special Interest Group |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Professional Practitioners |
| Results and Impact | Cancer Radiologists and Radiographers based at the Royal Marsden NHS Foundation Trust requested and attended a high level seminar on Photon-Counting CT, which sparked a lot of questions and a thorough discussion afterwards on this novel medical imaging technique, which will be the next generation of CT scanners in the clinic with real benefits for the patients. An important outcome with significant impact from this seminar is that RMH made a decision to acquire a state-of-the-art photon-counting CT system |
| Year(s) Of Engagement Activity | 2024 |